Gchil1479.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1479.t1
Unique Name	Gchil1479.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	805

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:282139..284553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo108389
PFAMs	Peptidase_S9,Peptidase_S9_N
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K01354
KEGG Pathway	ko05142,ko05143,map05142,map05143
Evalue	2.61e-241
EggNOG OGs	COG1505@1\|root,KOG2237@2759\|Eukaryota,3Q8HE@4776\|Peronosporales
EC	3.4.21.83
Description	Prolyl oligopeptidase, N-terminal beta-propeller domain
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1479	Gchil1479	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 282139..284553 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1479.t1.stop1	Gchil1479.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 282139..282141 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1479.t1.CDS1	Gchil1479.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 282139..284553 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1479.t1.exon1	Gchil1479.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 282139..284553 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1479.t1.start1	Gchil1479.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 284551..284553 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1479.t1	Gchil1479.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 282139..284553 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:282139..284553-
coding sequence from alignment at tig00004403_pilon:282139..284553-

mRNA sequence

>Gchil1479.t1 ID=Gchil1479.t1|Name=Gchil1479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=805bp
MPADCPHNRPTSPAPRLVRDQPSSALRPSHGVISSPVVRMSSSPPSASPP
SAVAAPAVAAPAAALPRLAAAAAVALLAVAAECVRRVRRGAVRKAPPRPL
ERPHDVLFGKVPNVHHGDGALIDPPELVTDPFFWMRDDDRKHPLVLDHLR
QENAYTNYMTLSNRPFVRRIYKELLSHFIETDSSVPVKDGQYVYYTRTVK
GKSYPYYCRKPIVNAAYGPEQLMLDVNKLASGNKHCSVAVCSVSPQADIM
AYVVDFSGYETFDIYFKHLETGKILHDDTIRNTAGNFEWGRDNSSVYYTT
FDDSHRPYKLWRHQMRTAQSSPAKTTNDACLYTENDAEFYLQFEKSLSKR
FLLVGSSASTVSEHRFLDLDNPGSDIKLFRERESGVLYDVSHATNDFFYV
IANIEGATNFKLMRTTASVPHVWTEFLRYEKNRKINSVLSFKTFAVLSGR
EHGYEQLWVLPEHNPQKMHLVDSEETAHVIDIGYNCEYDATSFRYIYSSL
TTPKRDYEYDVKSKQSTSLKEDKVPGYNKLLYKTERLEAISPDGTAIPIS
LVYNSKAISENGPNKLHLYGYGSYEISIDPSFSMTRLPMLDRGVVYAIAH
IRGGGEYGREWYEAARFETKRKTFEDFCACAEHLIDTGRTTPRFLSIEGR
SAGGLLIGAVLNMRPELFKAAIAGVPFVDVLNTMSDPSIPLTTGEWQEWG
NPHCRKYFDAIKEYCPYTNVGPKPYPAVLILAGLYDPRVMYSEPAKWAAK
LRKYTTRTDPILLKVDMSSGHFSASNRYSYLSEKAFDTAWVLRQLDAPEN
PTCS*

spliced messenger RNA

>Gchil1479.t1 ID=Gchil1479.t1|Name=Gchil1479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2415bp|location=Sequence derived from alignment at tig00004403_pilon:282139..284553- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGATTGTCCGCACAACCGCCCCACCTCGCCCGCGCCACGCTT
GGTGCGCGATCAGCCGTCGTCCGCGCTGCGTCCGTCCCACGGCGTGATAT
CATCGCCCGTCGTTCGCATGAGCTCGTCCCCGCCGTCCGCATCGCCGCCG
TCCGCCGTCGCGGCGCCCGCCGTCGCGGCGCCCGCCGCTGCTCTGCCGCG
TCTGGCCGCCGCCGCCGCCGTCGCGCTGCTGGCCGTTGCTGCTGAGTGCG
TGCGTCGCGTGCGACGTGGCGCCGTGCGAAAGGCGCCTCCGCGCCCGCTG
GAGAGGCCGCATGATGTGCTTTTTGGCAAAGTTCCGAACGTTCATCATGG
CGACGGTGCGCTTATTGATCCGCCTGAGCTTGTCACCGATCCTTTCTTTT
GGATGCGCGATGATGATAGGAAGCATCCTCTTGTGTTGGACCACCTGCGA
CAGGAGAATGCCTACACCAACTATATGACCTTGTCCAATCGTCCTTTTGT
GCGTCGCATCTATAAGGAGCTCTTGTCCCATTTTATCGAGACTGATTCCT
CCGTCCCAGTCAAGGACGGCCAGTATGTGTACTACACAAGGACCGTCAAG
GGAAAGAGCTACCCGTACTACTGTCGCAAGCCCATCGTCAATGCCGCTTA
CGGCCCCGAACAGCTCATGCTTGACGTCAACAAGTTGGCCAGCGGAAACA
AGCACTGCTCCGTTGCCGTTTGTTCCGTCAGTCCTCAGGCCGACATAATG
GCTTACGTCGTCGACTTTTCGGGCTACGAGACTTTTGACATCTACTTCAA
GCACCTCGAAACAGGAAAAATACTGCACGACGACACCATTCGAAATACCG
CCGGCAACTTCGAGTGGGGCCGTGACAATTCTTCTGTGTACTACACTACC
TTTGACGATTCTCATCGCCCGTACAAGCTATGGCGCCATCAAATGCGTAC
AGCTCAGTCCTCGCCTGCGAAAACCACAAATGACGCATGTCTTTACACCG
AGAACGACGCTGAGTTCTACCTGCAGTTTGAGAAATCGCTGTCGAAGCGC
TTCCTGCTCGTGGGCTCCTCAGCCAGCACTGTGTCGGAGCATCGTTTTCT
TGACTTGGACAACCCGGGCTCTGATATCAAATTGTTCCGCGAACGAGAAT
CTGGCGTGTTGTACGATGTGTCCCATGCCACCAACGATTTCTTCTATGTC
ATTGCCAACATAGAAGGCGCCACTAACTTTAAACTCATGCGCACCACCGC
TAGCGTCCCTCATGTCTGGACTGAATTCCTTCGCTACGAAAAAAATCGCA
AGATCAATTCCGTGTTGTCTTTCAAAACTTTTGCCGTACTCTCTGGCAGA
GAACACGGTTATGAGCAGCTGTGGGTGCTTCCAGAGCACAATCCTCAGAA
GATGCATCTTGTCGACTCGGAAGAGACAGCACACGTCATCGACATCGGCT
ACAACTGCGAGTACGACGCCACGTCCTTCCGCTACATTTATTCTTCCCTC
ACCACTCCCAAACGCGACTACGAGTACGATGTCAAGTCAAAACAAAGCAC
CTCTCTCAAGGAAGATAAAGTGCCTGGTTATAACAAGCTACTGTACAAGA
CTGAACGCTTAGAAGCTATCAGCCCAGACGGAACGGCAATACCAATTTCC
CTAGTCTATAATTCCAAAGCAATATCAGAGAATGGACCAAACAAGCTGCA
CCTGTATGGGTATGGTTCATACGAGATTTCCATTGATCCCTCCTTTTCTA
TGACAAGGCTTCCAATGCTTGATCGAGGTGTGGTTTACGCAATTGCGCAC
ATTCGCGGCGGCGGAGAGTATGGGAGGGAATGGTACGAAGCCGCCAGGTT
CGAAACCAAGAGAAAGACATTTGAGGATTTCTGCGCGTGTGCTGAGCATC
TTATTGACACCGGTAGAACCACGCCCAGATTTTTGTCCATTGAGGGTCGC
TCTGCTGGAGGGCTTTTGATTGGTGCTGTGCTAAATATGCGCCCAGAGCT
GTTCAAGGCAGCGATCGCAGGAGTCCCTTTTGTGGATGTATTGAACACAA
TGTCAGACCCGTCGATTCCCCTGACAACGGGAGAGTGGCAAGAATGGGGC
AATCCACATTGCAGAAAGTACTTTGATGCTATCAAAGAGTACTGTCCATA
CACAAATGTCGGTCCGAAGCCGTACCCAGCCGTGCTCATTCTCGCCGGAC
TGTATGACCCCCGTGTCATGTATTCTGAGCCAGCGAAATGGGCTGCCAAG
CTGAGGAAGTATACCACGAGAACTGATCCTATTCTGCTGAAAGTGGACAT
GTCAAGCGGACATTTTTCTGCATCAAACAGATACAGTTATCTTTCGGAGA
AGGCTTTTGATACGGCGTGGGTGCTGCGGCAGCTGGATGCGCCAGAGAAT
CCCACTTGTTCGTAG

protein sequence of Gchil1479.t1

>Gchil1479.t1 ID=Gchil1479.t1|Name=Gchil1479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=805bp
MPADCPHNRPTSPAPRLVRDQPSSALRPSHGVISSPVVRMSSSPPSASPP
SAVAAPAVAAPAAALPRLAAAAAVALLAVAAECVRRVRRGAVRKAPPRPL
ERPHDVLFGKVPNVHHGDGALIDPPELVTDPFFWMRDDDRKHPLVLDHLR
QENAYTNYMTLSNRPFVRRIYKELLSHFIETDSSVPVKDGQYVYYTRTVK
GKSYPYYCRKPIVNAAYGPEQLMLDVNKLASGNKHCSVAVCSVSPQADIM
AYVVDFSGYETFDIYFKHLETGKILHDDTIRNTAGNFEWGRDNSSVYYTT
FDDSHRPYKLWRHQMRTAQSSPAKTTNDACLYTENDAEFYLQFEKSLSKR
FLLVGSSASTVSEHRFLDLDNPGSDIKLFRERESGVLYDVSHATNDFFYV
IANIEGATNFKLMRTTASVPHVWTEFLRYEKNRKINSVLSFKTFAVLSGR
EHGYEQLWVLPEHNPQKMHLVDSEETAHVIDIGYNCEYDATSFRYIYSSL
TTPKRDYEYDVKSKQSTSLKEDKVPGYNKLLYKTERLEAISPDGTAIPIS
LVYNSKAISENGPNKLHLYGYGSYEISIDPSFSMTRLPMLDRGVVYAIAH
IRGGGEYGREWYEAARFETKRKTFEDFCACAEHLIDTGRTTPRFLSIEGR
SAGGLLIGAVLNMRPELFKAAIAGVPFVDVLNTMSDPSIPLTTGEWQEWG
NPHCRKYFDAIKEYCPYTNVGPKPYPAVLILAGLYDPRVMYSEPAKWAAK
LRKYTTRTDPILLKVDMSSGHFSASNRYSYLSEKAFDTAWVLRQLDAPEN
PTCS*

mRNA from alignment at tig00004403_pilon:282139..284553-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1479.t1 ID=Gchil1479.t1|Name=Gchil1479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2415bp|location=Sequence derived from alignment at tig00004403_pilon:282139..284553- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCCGATTGTCCGCACAACCGCCCCACCTCGCCCGCGCCACGCTT
GGTGCGCGATCAGCCGTCGTCCGCGCTGCGTCCGTCCCACGGCGTGATAT
CATCGCCCGTCGTTCGCATGAGCTCGTCCCCGCCGTCCGCATCGCCGCCG
TCCGCCGTCGCGGCGCCCGCCGTCGCGGCGCCCGCCGCTGCTCTGCCGCG
TCTGGCCGCCGCCGCCGCCGTCGCGCTGCTGGCCGTTGCTGCTGAGTGCG
TGCGTCGCGTGCGACGTGGCGCCGTGCGAAAGGCGCCTCCGCGCCCGCTG
GAGAGGCCGCATGATGTGCTTTTTGGCAAAGTTCCGAACGTTCATCATGG
CGACGGTGCGCTTATTGATCCGCCTGAGCTTGTCACCGATCCTTTCTTTT
GGATGCGCGATGATGATAGGAAGCATCCTCTTGTGTTGGACCACCTGCGA
CAGGAGAATGCCTACACCAACTATATGACCTTGTCCAATCGTCCTTTTGT
GCGTCGCATCTATAAGGAGCTCTTGTCCCATTTTATCGAGACTGATTCCT
CCGTCCCAGTCAAGGACGGCCAGTATGTGTACTACACAAGGACCGTCAAG
GGAAAGAGCTACCCGTACTACTGTCGCAAGCCCATCGTCAATGCCGCTTA
CGGCCCCGAACAGCTCATGCTTGACGTCAACAAGTTGGCCAGCGGAAACA
AGCACTGCTCCGTTGCCGTTTGTTCCGTCAGTCCTCAGGCCGACATAATG
GCTTACGTCGTCGACTTTTCGGGCTACGAGACTTTTGACATCTACTTCAA
GCACCTCGAAACAGGAAAAATACTGCACGACGACACCATTCGAAATACCG
CCGGCAACTTCGAGTGGGGCCGTGACAATTCTTCTGTGTACTACACTACC
TTTGACGATTCTCATCGCCCGTACAAGCTATGGCGCCATCAAATGCGTAC
AGCTCAGTCCTCGCCTGCGAAAACCACAAATGACGCATGTCTTTACACCG
AGAACGACGCTGAGTTCTACCTGCAGTTTGAGAAATCGCTGTCGAAGCGC
TTCCTGCTCGTGGGCTCCTCAGCCAGCACTGTGTCGGAGCATCGTTTTCT
TGACTTGGACAACCCGGGCTCTGATATCAAATTGTTCCGCGAACGAGAAT
CTGGCGTGTTGTACGATGTGTCCCATGCCACCAACGATTTCTTCTATGTC
ATTGCCAACATAGAAGGCGCCACTAACTTTAAACTCATGCGCACCACCGC
TAGCGTCCCTCATGTCTGGACTGAATTCCTTCGCTACGAAAAAAATCGCA
AGATCAATTCCGTGTTGTCTTTCAAAACTTTTGCCGTACTCTCTGGCAGA
GAACACGGTTATGAGCAGCTGTGGGTGCTTCCAGAGCACAATCCTCAGAA
GATGCATCTTGTCGACTCGGAAGAGACAGCACACGTCATCGACATCGGCT
ACAACTGCGAGTACGACGCCACGTCCTTCCGCTACATTTATTCTTCCCTC
ACCACTCCCAAACGCGACTACGAGTACGATGTCAAGTCAAAACAAAGCAC
CTCTCTCAAGGAAGATAAAGTGCCTGGTTATAACAAGCTACTGTACAAGA
CTGAACGCTTAGAAGCTATCAGCCCAGACGGAACGGCAATACCAATTTCC
CTAGTCTATAATTCCAAAGCAATATCAGAGAATGGACCAAACAAGCTGCA
CCTGTATGGGTATGGTTCATACGAGATTTCCATTGATCCCTCCTTTTCTA
TGACAAGGCTTCCAATGCTTGATCGAGGTGTGGTTTACGCAATTGCGCAC
ATTCGCGGCGGCGGAGAGTATGGGAGGGAATGGTACGAAGCCGCCAGGTT
CGAAACCAAGAGAAAGACATTTGAGGATTTCTGCGCGTGTGCTGAGCATC
TTATTGACACCGGTAGAACCACGCCCAGATTTTTGTCCATTGAGGGTCGC
TCTGCTGGAGGGCTTTTGATTGGTGCTGTGCTAAATATGCGCCCAGAGCT
GTTCAAGGCAGCGATCGCAGGAGTCCCTTTTGTGGATGTATTGAACACAA
TGTCAGACCCGTCGATTCCCCTGACAACGGGAGAGTGGCAAGAATGGGGC
AATCCACATTGCAGAAAGTACTTTGATGCTATCAAAGAGTACTGTCCATA
CACAAATGTCGGTCCGAAGCCGTACCCAGCCGTGCTCATTCTCGCCGGAC
TGTATGACCCCCGTGTCATGTATTCTGAGCCAGCGAAATGGGCTGCCAAG
CTGAGGAAGTATACCACGAGAACTGATCCTATTCTGCTGAAAGTGGACAT
GTCAAGCGGACATTTTTCTGCATCAAACAGATACAGTTATCTTTCGGAGA
AGGCTTTTGATACGGCGTGGGTGCTGCGGCAGCTGGATGCGCCAGAGAAT
CCCACTTGTTCGTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:282139..284553-

>Gchil1479.t1 ID=Gchil1479.t1|Name=Gchil1479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2415bp|location=Sequence derived from alignment at tig00004403_pilon:282139..284553- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCCGATTGTCCGCACAACCGCCCCACCTCGCCCGCGCCACGCTT
GGTGCGCGATCAGCCGTCGTCCGCGCTGCGTCCGTCCCACGGCGTGATAT
CATCGCCCGTCGTTCGCATGAGCTCGTCCCCGCCGTCCGCATCGCCGCCG
TCCGCCGTCGCGGCGCCCGCCGTCGCGGCGCCCGCCGCTGCTCTGCCGCG
TCTGGCCGCCGCCGCCGCCGTCGCGCTGCTGGCCGTTGCTGCTGAGTGCG
TGCGTCGCGTGCGACGTGGCGCCGTGCGAAAGGCGCCTCCGCGCCCGCTG
GAGAGGCCGCATGATGTGCTTTTTGGCAAAGTTCCGAACGTTCATCATGG
CGACGGTGCGCTTATTGATCCGCCTGAGCTTGTCACCGATCCTTTCTTTT
GGATGCGCGATGATGATAGGAAGCATCCTCTTGTGTTGGACCACCTGCGA
CAGGAGAATGCCTACACCAACTATATGACCTTGTCCAATCGTCCTTTTGT
GCGTCGCATCTATAAGGAGCTCTTGTCCCATTTTATCGAGACTGATTCCT
CCGTCCCAGTCAAGGACGGCCAGTATGTGTACTACACAAGGACCGTCAAG
GGAAAGAGCTACCCGTACTACTGTCGCAAGCCCATCGTCAATGCCGCTTA
CGGCCCCGAACAGCTCATGCTTGACGTCAACAAGTTGGCCAGCGGAAACA
AGCACTGCTCCGTTGCCGTTTGTTCCGTCAGTCCTCAGGCCGACATAATG
GCTTACGTCGTCGACTTTTCGGGCTACGAGACTTTTGACATCTACTTCAA
GCACCTCGAAACAGGAAAAATACTGCACGACGACACCATTCGAAATACCG
CCGGCAACTTCGAGTGGGGCCGTGACAATTCTTCTGTGTACTACACTACC
TTTGACGATTCTCATCGCCCGTACAAGCTATGGCGCCATCAAATGCGTAC
AGCTCAGTCCTCGCCTGCGAAAACCACAAATGACGCATGTCTTTACACCG
AGAACGACGCTGAGTTCTACCTGCAGTTTGAGAAATCGCTGTCGAAGCGC
TTCCTGCTCGTGGGCTCCTCAGCCAGCACTGTGTCGGAGCATCGTTTTCT
TGACTTGGACAACCCGGGCTCTGATATCAAATTGTTCCGCGAACGAGAAT
CTGGCGTGTTGTACGATGTGTCCCATGCCACCAACGATTTCTTCTATGTC
ATTGCCAACATAGAAGGCGCCACTAACTTTAAACTCATGCGCACCACCGC
TAGCGTCCCTCATGTCTGGACTGAATTCCTTCGCTACGAAAAAAATCGCA
AGATCAATTCCGTGTTGTCTTTCAAAACTTTTGCCGTACTCTCTGGCAGA
GAACACGGTTATGAGCAGCTGTGGGTGCTTCCAGAGCACAATCCTCAGAA
GATGCATCTTGTCGACTCGGAAGAGACAGCACACGTCATCGACATCGGCT
ACAACTGCGAGTACGACGCCACGTCCTTCCGCTACATTTATTCTTCCCTC
ACCACTCCCAAACGCGACTACGAGTACGATGTCAAGTCAAAACAAAGCAC
CTCTCTCAAGGAAGATAAAGTGCCTGGTTATAACAAGCTACTGTACAAGA
CTGAACGCTTAGAAGCTATCAGCCCAGACGGAACGGCAATACCAATTTCC
CTAGTCTATAATTCCAAAGCAATATCAGAGAATGGACCAAACAAGCTGCA
CCTGTATGGGTATGGTTCATACGAGATTTCCATTGATCCCTCCTTTTCTA
TGACAAGGCTTCCAATGCTTGATCGAGGTGTGGTTTACGCAATTGCGCAC
ATTCGCGGCGGCGGAGAGTATGGGAGGGAATGGTACGAAGCCGCCAGGTT
CGAAACCAAGAGAAAGACATTTGAGGATTTCTGCGCGTGTGCTGAGCATC
TTATTGACACCGGTAGAACCACGCCCAGATTTTTGTCCATTGAGGGTCGC
TCTGCTGGAGGGCTTTTGATTGGTGCTGTGCTAAATATGCGCCCAGAGCT
GTTCAAGGCAGCGATCGCAGGAGTCCCTTTTGTGGATGTATTGAACACAA
TGTCAGACCCGTCGATTCCCCTGACAACGGGAGAGTGGCAAGAATGGGGC
AATCCACATTGCAGAAAGTACTTTGATGCTATCAAAGAGTACTGTCCATA
CACAAATGTCGGTCCGAAGCCGTACCCAGCCGTGCTCATTCTCGCCGGAC
TGTATGACCCCCGTGTCATGTATTCTGAGCCAGCGAAATGGGCTGCCAAG
CTGAGGAAGTATACCACGAGAACTGATCCTATTCTGCTGAAAGTGGACAT
GTCAAGCGGACATTTTTCTGCATCAAACAGATACAGTTATCTTTCGGAGA
AGGCTTTTGATACGGCGTGGGTGCTGCGGCAGCTGGATGCGCCAGAGAAT
CCCACTTGTTCGTAG