Gchil1472.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1472.t1
Unique NameGchil1472.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:247313..247720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog244447.XP_008336702.1
Preferred namePSMG4
PFAMsPAC4
Max annot lvl33208|Metazoa
KEGG koko:K11878
Evalue0.000133
EggNOG OGs2C76C@1|root,2S31R@2759|Eukaryota,3A3KR@33154|Opisthokonta,3BRNE@33208|Metazoa,3D729@33213|Bilateria,48E86@7711|Chordata,49CDR@7742|Vertebrata,4A3YI@7898|Actinopterygii
DescriptionProteasome (prosome, macropain) assembly chaperone 4
COG categoryS
BRITEko00000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1472Gchil1472Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 247313..247720 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1472.t1.start1Gchil1472.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 247313..247315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1472.t1.CDS1Gchil1472.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 247313..247720 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1472.t1.exon1Gchil1472.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 247313..247720 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1472.t1.stop1Gchil1472.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 247718..247720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1472.t1Gchil1472.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 247313..247720 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1472.t1 ID=Gchil1472.t1|Name=Gchil1472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=136bp
MEVTAFTDQLADLRMRYQITYMKDSVMVWVQPTTDGSLGSLSCLAICMGL
CVNDEALPPASTVFATTDHISSTSHGFAQKLSKRCGLAVYACIDIPDSAA
VLEDNIFRRVLRELERHGLTFSTDHDIGTGEEAPA*
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spliced messenger RNA

>Gchil1472.t1 ID=Gchil1472.t1|Name=Gchil1472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00004403_pilon:247313..247720+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTGACAGCATTTACGGACCAACTAGCCGATCTACGAATGCGCTA
TCAAATAACTTATATGAAAGACTCCGTCATGGTGTGGGTCCAGCCCACCA
CAGATGGATCTCTCGGGTCGCTAAGTTGTCTAGCCATATGCATGGGTCTC
TGTGTCAACGATGAGGCACTACCGCCTGCCAGTACTGTATTCGCAACAAC
CGATCATATCTCATCCACAAGTCACGGATTTGCTCAGAAACTGTCAAAGC
GTTGTGGGCTTGCGGTGTATGCATGTATCGACATTCCGGACAGTGCCGCA
GTCTTGGAGGATAACATTTTCAGACGGGTGCTGAGAGAACTAGAACGCCA
CGGTCTGACATTTTCTACTGATCACGATATTGGAACAGGAGAAGAGGCAC
CAGCCTAG
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protein sequence of Gchil1472.t1

>Gchil1472.t1 ID=Gchil1472.t1|Name=Gchil1472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=136bp
MEVTAFTDQLADLRMRYQITYMKDSVMVWVQPTTDGSLGSLSCLAICMGL
CVNDEALPPASTVFATTDHISSTSHGFAQKLSKRCGLAVYACIDIPDSAA
VLEDNIFRRVLRELERHGLTFSTDHDIGTGEEAPA*
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mRNA from alignment at tig00004403_pilon:247313..247720+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1472.t1 ID=Gchil1472.t1|Name=Gchil1472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00004403_pilon:247313..247720+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTGACAGCATTTACGGACCAACTAGCCGATCTACGAATGCGCTA
TCAAATAACTTATATGAAAGACTCCGTCATGGTGTGGGTCCAGCCCACCA
CAGATGGATCTCTCGGGTCGCTAAGTTGTCTAGCCATATGCATGGGTCTC
TGTGTCAACGATGAGGCACTACCGCCTGCCAGTACTGTATTCGCAACAAC
CGATCATATCTCATCCACAAGTCACGGATTTGCTCAGAAACTGTCAAAGC
GTTGTGGGCTTGCGGTGTATGCATGTATCGACATTCCGGACAGTGCCGCA
GTCTTGGAGGATAACATTTTCAGACGGGTGCTGAGAGAACTAGAACGCCA
CGGTCTGACATTTTCTACTGATCACGATATTGGAACAGGAGAAGAGGCAC
CAGCCTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:247313..247720+

>Gchil1472.t1 ID=Gchil1472.t1|Name=Gchil1472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00004403_pilon:247313..247720+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTGACAGCATTTACGGACCAACTAGCCGATCTACGAATGCGCTA
TCAAATAACTTATATGAAAGACTCCGTCATGGTGTGGGTCCAGCCCACCA
CAGATGGATCTCTCGGGTCGCTAAGTTGTCTAGCCATATGCATGGGTCTC
TGTGTCAACGATGAGGCACTACCGCCTGCCAGTACTGTATTCGCAACAAC
CGATCATATCTCATCCACAAGTCACGGATTTGCTCAGAAACTGTCAAAGC
GTTGTGGGCTTGCGGTGTATGCATGTATCGACATTCCGGACAGTGCCGCA
GTCTTGGAGGATAACATTTTCAGACGGGTGCTGAGAGAACTAGAACGCCA
CGGTCTGACATTTTCTACTGATCACGATATTGGAACAGGAGAAGAGGCAC
CAGCCTAG
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