Gchil1464.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1464.t1
Unique NameGchil1464.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:114518..116131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1464Gchil1464Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 114518..116131 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1464.t1.start1Gchil1464.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 114518..114520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1464.t1.CDS1Gchil1464.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 114518..116131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1464.t1.exon1Gchil1464.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 114518..116131 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1464.t1.stop1Gchil1464.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 116129..116131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1464.t1Gchil1464.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 114518..116131 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1464.t1 ID=Gchil1464.t1|Name=Gchil1464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MTLPTRVDDARLARLLCGPAAALPRVQRRAVAAMADVGAACCELALARRV
LRDAASNGNGDDDDDDDDDDDDDDDDGATVSLAFALRELQRAAAGPNLAP
GACVRLRYVVALRAAVARDLPRAARALRQRAAAQLRHAPSAYLAALLPLM
SPATTDHNHFSPHHQDADADADADADADAAEARLAALAARPYRTTDCTAL
MARCAARRARHSRAVLLWQSVLATDARRRAALVAAAAAFNRLAAFDEERR
LLAIALALPDSRPMPSPSCVHLLPRSPSPAALREQHARALLATSTPTPTH
HQHHAAARPSPPPPPPPPPLPPLPPPETAVWLLRRGRLRAALCIANEHAP
DQRGAPARALAALAAAEAAVRENDPSTAAEHLRHAMRDVLTLAHGPVALA
ARVVVFLNCAVVHAAQARFVVADEEFGAAATAAAKLAAPCAHSEDDGARA
VRAWARRRALLAAFSRAVVLLARGDAEDAHSFWDAFCAREGVCDGDAGAV
DGDGGVDGDAPNVVDDVPDAVVASLRPLLARRAHMLL*
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spliced messenger RNA

>Gchil1464.t1 ID=Gchil1464.t1|Name=Gchil1464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004403_pilon:114518..116131+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTACCGACGCGCGTCGACGACGCCCGACTGGCGCGTCTCTTGTG
CGGTCCGGCCGCCGCGCTGCCGCGCGTGCAGCGGCGCGCCGTCGCCGCCA
TGGCCGACGTCGGCGCCGCGTGCTGCGAGCTCGCGCTGGCGCGCCGTGTG
CTGCGCGACGCTGCGTCCAATGGCAATGGCGATgacgacgacgacgacga
cgacgacgacgacgacgacgacgacgacgGCGCCACGGTGTCGCTGGCGT
TCGCGCTGCGCGAGCTGCAGCGCGCCGCCGCGGGCCCCAACTTGGCGCCG
GGTGCATGCGTGCGACTGCGCTACGTCGTCGCGCTGCGCGCCGCCGTGGC
GCGCGACCTGCCGCGCGCCGCACGCGCCCTCCGCCAACGCGCCGCCGCCC
AGCTGCGCCACGCCCCCAGCGCCTACCTGGCCGCGCTCTTGCCACTGATG
TcccccgccaccactgaccacaaccacttctccccccaccaccaAgacgc
cgacgccgacgccgacgccgacgccgacgccgacgccgCCGAGGCACGTC
TGGCCGCGTTGGCCGCCCGTCCGTATCGCACCACCGACTGCACGGCGCTC
ATGGCGCGTTGCGCCGCGCGTCGCGCCCGCCATTCGCGCGCCGTTCTCTT
GTGGCAGAGCGTTTTGGCAAccgacgcgcgtcgtcgcgccgccctggtcg
cagccgccgccgccTTCAACCGTCTGGCCGCCTTCGACGAGGAGCGTCGC
CTGCTGGCCATTGCGCTTGCCCTTCCCGACTCGCGCCCCATGCCTTCGCC
CTCTTGTGTCCACCTGTTGCcccgctccccgtcacccgccgccctgcgcg
agcagcacgcgcgcgccCTTCTGGccacctccacccccacccccacccac
caccaacaccacGCCGCCGCACGACCatcaccaccaccaccaccaccacc
cccaccgctgccgccgctgccgccaccggaaaccgccgtctggctgctgc
GCCGCGGTCGTCTGCGCGCCGCGCTGTGCATCGCCAACGAGCACGCTCCA
GATCAgcgcggcgcccccgcgcgcgcactcgccgcgctggccgctgcgga
agccgccgtgcgcgAAAACGACCCGTCCACCGCCGCCGAACATCTGCGCC
ACGCCATGCGCGACGTGCTGACGCTCGCGCACGGCCCCGTGGCGCTTGCT
GCACGCGTCGTCGTTTTCCTTAACTGCGCCGTTGTGCACGCGGCGCAGGC
GCGTTTTGTCGTTGCTGATGAGGAATTTGGCGCTGCCGCCACTGCCGCAG
CCAAACTAGCTGCGCCATGCGCCCACAGTGAGGATGATGgcgcgcgcgct
gtgcgcgcgtgggcgcgcCGGAGGGCACTTTTGGCGGCGTTCTCTCGCGC
GGTCGTGCTGTTGGCGAGGGGCGATGCTGAGGACGCTCACAGCTTTTGGG
ACGCTTTCTGTGCGCGTGAGGGAGTTTgcgacggcgacgctggcgccgtc
gatggtgacggtggcgtcgacggagaTGCGCCCAACGTGGTGGACGACGT
GCCTGACGCCGTAGTGGCGAGCCTGCGTCCGCTGCTGGCACGCCGCGCTC
ACATGCTTTTGTAA
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protein sequence of Gchil1464.t1

>Gchil1464.t1 ID=Gchil1464.t1|Name=Gchil1464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MTLPTRVDDARLARLLCGPAAALPRVQRRAVAAMADVGAACCELALARRV
LRDAASNGNGDDDDDDDDDDDDDDDDGATVSLAFALRELQRAAAGPNLAP
GACVRLRYVVALRAAVARDLPRAARALRQRAAAQLRHAPSAYLAALLPLM
SPATTDHNHFSPHHQDADADADADADADAAEARLAALAARPYRTTDCTAL
MARCAARRARHSRAVLLWQSVLATDARRRAALVAAAAAFNRLAAFDEERR
LLAIALALPDSRPMPSPSCVHLLPRSPSPAALREQHARALLATSTPTPTH
HQHHAAARPSPPPPPPPPPLPPLPPPETAVWLLRRGRLRAALCIANEHAP
DQRGAPARALAALAAAEAAVRENDPSTAAEHLRHAMRDVLTLAHGPVALA
ARVVVFLNCAVVHAAQARFVVADEEFGAAATAAAKLAAPCAHSEDDGARA
VRAWARRRALLAAFSRAVVLLARGDAEDAHSFWDAFCAREGVCDGDAGAV
DGDGGVDGDAPNVVDDVPDAVVASLRPLLARRAHMLL*
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mRNA from alignment at tig00004403_pilon:114518..116131+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1464.t1 ID=Gchil1464.t1|Name=Gchil1464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004403_pilon:114518..116131+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTACCGACGCGCGTCGACGACGCCCGACTGGCGCGTCTCTTGTG
CGGTCCGGCCGCCGCGCTGCCGCGCGTGCAGCGGCGCGCCGTCGCCGCCA
TGGCCGACGTCGGCGCCGCGTGCTGCGAGCTCGCGCTGGCGCGCCGTGTG
CTGCGCGACGCTGCGTCCAATGGCAATGGCGATgacgacgacgacgacga
cgacgacgacgacgacgacgacgacgacgGCGCCACGGTGTCGCTGGCGT
TCGCGCTGCGCGAGCTGCAGCGCGCCGCCGCGGGCCCCAACTTGGCGCCG
GGTGCATGCGTGCGACTGCGCTACGTCGTCGCGCTGCGCGCCGCCGTGGC
GCGCGACCTGCCGCGCGCCGCACGCGCCCTCCGCCAACGCGCCGCCGCCC
AGCTGCGCCACGCCCCCAGCGCCTACCTGGCCGCGCTCTTGCCACTGATG
TcccccgccaccactgaccacaaccacttctccccccaccaccaAgacgc
cgacgccgacgccgacgccgacgccgacgccgacgccgCCGAGGCACGTC
TGGCCGCGTTGGCCGCCCGTCCGTATCGCACCACCGACTGCACGGCGCTC
ATGGCGCGTTGCGCCGCGCGTCGCGCCCGCCATTCGCGCGCCGTTCTCTT
GTGGCAGAGCGTTTTGGCAAccgacgcgcgtcgtcgcgccgccctggtcg
cagccgccgccgccTTCAACCGTCTGGCCGCCTTCGACGAGGAGCGTCGC
CTGCTGGCCATTGCGCTTGCCCTTCCCGACTCGCGCCCCATGCCTTCGCC
CTCTTGTGTCCACCTGTTGCcccgctccccgtcacccgccgccctgcgcg
agcagcacgcgcgcgccCTTCTGGccacctccacccccacccccacccac
caccaacaccacGCCGCCGCACGACCatcaccaccaccaccaccaccacc
cccaccgctgccgccgctgccgccaccggaaaccgccgtctggctgctgc
GCCGCGGTCGTCTGCGCGCCGCGCTGTGCATCGCCAACGAGCACGCTCCA
GATCAgcgcggcgcccccgcgcgcgcactcgccgcgctggccgctgcgga
agccgccgtgcgcgAAAACGACCCGTCCACCGCCGCCGAACATCTGCGCC
ACGCCATGCGCGACGTGCTGACGCTCGCGCACGGCCCCGTGGCGCTTGCT
GCACGCGTCGTCGTTTTCCTTAACTGCGCCGTTGTGCACGCGGCGCAGGC
GCGTTTTGTCGTTGCTGATGAGGAATTTGGCGCTGCCGCCACTGCCGCAG
CCAAACTAGCTGCGCCATGCGCCCACAGTGAGGATGATGgcgcgcgcgct
gtgcgcgcgtgggcgcgcCGGAGGGCACTTTTGGCGGCGTTCTCTCGCGC
GGTCGTGCTGTTGGCGAGGGGCGATGCTGAGGACGCTCACAGCTTTTGGG
ACGCTTTCTGTGCGCGTGAGGGAGTTTgcgacggcgacgctggcgccgtc
gatggtgacggtggcgtcgacggagaTGCGCCCAACGTGGTGGACGACGT
GCCTGACGCCGTAGTGGCGAGCCTGCGTCCGCTGCTGGCACGCCGCGCTC
ACATGCTTTTGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:114518..116131+

>Gchil1464.t1 ID=Gchil1464.t1|Name=Gchil1464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00004403_pilon:114518..116131+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTACCGACGCGCGTCGACGACGCCCGACTGGCGCGTCTCTTGTG
CGGTCCGGCCGCCGCGCTGCCGCGCGTGCAGCGGCGCGCCGTCGCCGCCA
TGGCCGACGTCGGCGCCGCGTGCTGCGAGCTCGCGCTGGCGCGCCGTGTG
CTGCGCGACGCTGCGTCCAATGGCAATGGCGATgacgacgacgacgacga
cgacgacgacgacgacgacgacgacgacgGCGCCACGGTGTCGCTGGCGT
TCGCGCTGCGCGAGCTGCAGCGCGCCGCCGCGGGCCCCAACTTGGCGCCG
GGTGCATGCGTGCGACTGCGCTACGTCGTCGCGCTGCGCGCCGCCGTGGC
GCGCGACCTGCCGCGCGCCGCACGCGCCCTCCGCCAACGCGCCGCCGCCC
AGCTGCGCCACGCCCCCAGCGCCTACCTGGCCGCGCTCTTGCCACTGATG
TcccccgccaccactgaccacaaccacttctccccccaccaccaAgacgc
cgacgccgacgccgacgccgacgccgacgccgacgccgCCGAGGCACGTC
TGGCCGCGTTGGCCGCCCGTCCGTATCGCACCACCGACTGCACGGCGCTC
ATGGCGCGTTGCGCCGCGCGTCGCGCCCGCCATTCGCGCGCCGTTCTCTT
GTGGCAGAGCGTTTTGGCAAccgacgcgcgtcgtcgcgccgccctggtcg
cagccgccgccgccTTCAACCGTCTGGCCGCCTTCGACGAGGAGCGTCGC
CTGCTGGCCATTGCGCTTGCCCTTCCCGACTCGCGCCCCATGCCTTCGCC
CTCTTGTGTCCACCTGTTGCcccgctccccgtcacccgccgccctgcgcg
agcagcacgcgcgcgccCTTCTGGccacctccacccccacccccacccac
caccaacaccacGCCGCCGCACGACCatcaccaccaccaccaccaccacc
cccaccgctgccgccgctgccgccaccggaaaccgccgtctggctgctgc
GCCGCGGTCGTCTGCGCGCCGCGCTGTGCATCGCCAACGAGCACGCTCCA
GATCAgcgcggcgcccccgcgcgcgcactcgccgcgctggccgctgcgga
agccgccgtgcgcgAAAACGACCCGTCCACCGCCGCCGAACATCTGCGCC
ACGCCATGCGCGACGTGCTGACGCTCGCGCACGGCCCCGTGGCGCTTGCT
GCACGCGTCGTCGTTTTCCTTAACTGCGCCGTTGTGCACGCGGCGCAGGC
GCGTTTTGTCGTTGCTGATGAGGAATTTGGCGCTGCCGCCACTGCCGCAG
CCAAACTAGCTGCGCCATGCGCCCACAGTGAGGATGATGgcgcgcgcgct
gtgcgcgcgtgggcgcgcCGGAGGGCACTTTTGGCGGCGTTCTCTCGCGC
GGTCGTGCTGTTGGCGAGGGGCGATGCTGAGGACGCTCACAGCTTTTGGG
ACGCTTTCTGTGCGCGTGAGGGAGTTTgcgacggcgacgctggcgccgtc
gatggtgacggtggcgtcgacggagaTGCGCCCAACGTGGTGGACGACGT
GCCTGACGCCGTAGTGGCGAGCCTGCGTCCGCTGCTGGCACGCCGCGCTC
ACATGCTTTTGTAA
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