Gchil1461.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1461.t1
Unique Name	Gchil1461.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:109807..111075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	208960.XP_007265705.1
Preferred name	rsd1
PFAMs	RBM39linker,RRM_1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K13091
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0070990,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990446,GO:1990904
Evalue	1.4e-32
EggNOG OGs	KOG0147@1\|root,KOG0147@2759\|Eukaryota,39R6Y@33154\|Opisthokonta,3NV0X@4751\|Fungi,3UYSN@5204\|Basidiomycota,22685@155619\|Agaricomycetes,3H0VN@355688\|Agaricomycetes incertae sedis
Description	Splicing factor, CC1-like protein
COG category	A
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1461	Gchil1461	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 109807..111075 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1461.t1.start1	Gchil1461.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 109807..109809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1461.t1.CDS1	Gchil1461.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 109807..111075 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1461.t1.exon1	Gchil1461.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 109807..111075 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1461.t1.stop1	Gchil1461.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 111073..111075 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1461.t1	Gchil1461.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 109807..111075 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:109807..111075+
coding sequence from alignment at tig00004403_pilon:109807..111075+

mRNA sequence

>Gchil1461.t1 ID=Gchil1461.t1|Name=Gchil1461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp
MDRYSSAHKSAGYVEFYDERAAQRAVDMTGTLLCGFPISVRRIAAPASAA
PTRVTSAADDALARADLRRRSLARPNTAAAAAAAAYDAPPSSGLPRCSTI
GWSARRPIRAVDADPALTSPPAGATAAPLQQLVSVEQLKRLLNPNELPVP
RVPRAHAGDLLRDAHSGATVGARRVCVGSIAPELNEADVKAVFDKYGAVG
SVQFQRDASGRSKGVAFIEFGSAQQARHALEANGLSLAFNKLTVALAATQ
DDWRGGDAASARPQPFVGRVPLPLVDVSGEIDEGRSGGLAMNSAQRVMLM
QQLSRGETLGSKMRGDVQKLKSCGEATRSIVLSNMFDASNEEAGFEKELL
EEVRDECVRKYGKVVHLHVETESHGIVYVRFSRVEEAVKARNDLSGRWFG
GKKIVAAFVKDADYSARFSQAE*

spliced messenger RNA

>Gchil1461.t1 ID=Gchil1461.t1|Name=Gchil1461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00004403_pilon:109807..111075+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCTACTCTAGCGCACACAAGAGCGCCGGCTACGTCGAGTTTTA
CGACGAGCGTGCCGCGCAGCGCGCCGTCGACATGACGGGCACCCTTCTGT
GCGGCTTCCCCATCTCGGTGCGTCGCATCGCCGCCCCGGCGTCCGCCGCG
CCTACTCGCGTCACATCTGCCGCCGATGACGCGCTCGCACGCGCCGATCT
TCGCCGTCGCTCGCTTGCGCGTCCCAACACCGCCGCTGCCGCTGCCGCTG
CCGCGTATGACGCGCCTCCGTCGAGCGGGCTCCCACGCTGCAGCACCATT
GGCTGGTCGGCGCGCCGGCCCATTCGCGCCGTCGACGCAGACCCCGCCTT
GACATCGCCGCCTGCCGGCGCTACTGCGGCGCCGCTACAGCAGCTGGTGT
CCGTCGAGCAGCTCAAGCGACTGCTCAACCCGAACGAGCTGCCCGTGCCG
CGCGTGCCGCGCGCGCACGCTGGCGATCTGCTACGCGACGCTCACAGCGG
CGCAACTGTCGGTGCGCGGCGCGTGTGCGTCGGCTCCATCGCTCCTGAGC
TCAACGAGGCGGATGTGAAGGCTGTGTTCGACAAGTACGGCGCTGTTGGA
TCGGTGCAGTTTCAGCGCGATGCCAGTGGGCGAAGCAAGGGCGTTGCATT
CATCGAGTTTGGAAGCGCGCAGCAAGCGCGGCACGCACTGGAGGCGAATG
GACTGTCGCTTGCGTTCAACAAGTTGACTGTGGCGCTCGCGGCGACACAG
GACGATTGGCGCGGCGGCGATGCAGCATCGGCGCGGCCGCAGCCGTTTGT
GGGTCGCGTGCCGCTGCCGCTGGTGGACGTGAGTGGCGAAATCGACGAAG
GACGCTCCGGCGGGCTGGCCATGAACAGTGCGCAGCGCGTGATGCTGATG
CAGCAGCTATCTCGTGGTGAGACGCTGGGCAGCAAGATGCGTGGCGACGT
GCAAAAGCTCAAGAGCTGCGGCGAGGCGACGCGATCGATTGTGCTGTCCA
ATATGTTCGATGCGAGCAACGAGGAGGCGGGCTTCGAGAAGGAGCTGTTG
GAGGAGGTTCGCGATGAGTGCGTGCGAAAGTACGGAAAGGTGGTTCATTT
GCACGTGGAGACGGAGTCGCATGGCATTGTTTACGTGCGGTTCAGCCGGG
TGGAGGAGGCGGTCAAGGCGCGGAACGATCTGAGCGGGCGGTGGTTTGGC
GGCAAGAAGATTGTGGCGGCGTTTGTGAAGGACGCGGACTACAGCGCGCG
GTTTTCGCAGGCGGAATGA

protein sequence of Gchil1461.t1

>Gchil1461.t1 ID=Gchil1461.t1|Name=Gchil1461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=423bp
MDRYSSAHKSAGYVEFYDERAAQRAVDMTGTLLCGFPISVRRIAAPASAA
PTRVTSAADDALARADLRRRSLARPNTAAAAAAAAYDAPPSSGLPRCSTI
GWSARRPIRAVDADPALTSPPAGATAAPLQQLVSVEQLKRLLNPNELPVP
RVPRAHAGDLLRDAHSGATVGARRVCVGSIAPELNEADVKAVFDKYGAVG
SVQFQRDASGRSKGVAFIEFGSAQQARHALEANGLSLAFNKLTVALAATQ
DDWRGGDAASARPQPFVGRVPLPLVDVSGEIDEGRSGGLAMNSAQRVMLM
QQLSRGETLGSKMRGDVQKLKSCGEATRSIVLSNMFDASNEEAGFEKELL
EEVRDECVRKYGKVVHLHVETESHGIVYVRFSRVEEAVKARNDLSGRWFG
GKKIVAAFVKDADYSARFSQAE*

mRNA from alignment at tig00004403_pilon:109807..111075+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1461.t1 ID=Gchil1461.t1|Name=Gchil1461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00004403_pilon:109807..111075+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCTACTCTAGCGCACACAAGAGCGCCGGCTACGTCGAGTTTTA
CGACGAGCGTGCCGCGCAGCGCGCCGTCGACATGACGGGCACCCTTCTGT
GCGGCTTCCCCATCTCGGTGCGTCGCATCGCCGCCCCGGCGTCCGCCGCG
CCTACTCGCGTCACATCTGCCGCCGATGACGCGCTCGCACGCGCCGATCT
TCGCCGTCGCTCGCTTGCGCGTCCCAACACCGCCGCTGCCGCTGCCGCTG
CCGCGTATGACGCGCCTCCGTCGAGCGGGCTCCCACGCTGCAGCACCATT
GGCTGGTCGGCGCGCCGGCCCATTCGCGCCGTCGACGCAGACCCCGCCTT
GACATCGCCGCCTGCCGGCGCTACTGCGGCGCCGCTACAGCAGCTGGTGT
CCGTCGAGCAGCTCAAGCGACTGCTCAACCCGAACGAGCTGCCCGTGCCG
CGCGTGCCGCGCGCGCACGCTGGCGATCTGCTACGCGACGCTCACAGCGG
CGCAACTGTCGGTGCGCGGCGCGTGTGCGTCGGCTCCATCGCTCCTGAGC
TCAACGAGGCGGATGTGAAGGCTGTGTTCGACAAGTACGGCGCTGTTGGA
TCGGTGCAGTTTCAGCGCGATGCCAGTGGGCGAAGCAAGGGCGTTGCATT
CATCGAGTTTGGAAGCGCGCAGCAAGCGCGGCACGCACTGGAGGCGAATG
GACTGTCGCTTGCGTTCAACAAGTTGACTGTGGCGCTCGCGGCGACACAG
GACGATTGGCGCGGCGGCGATGCAGCATCGGCGCGGCCGCAGCCGTTTGT
GGGTCGCGTGCCGCTGCCGCTGGTGGACGTGAGTGGCGAAATCGACGAAG
GACGCTCCGGCGGGCTGGCCATGAACAGTGCGCAGCGCGTGATGCTGATG
CAGCAGCTATCTCGTGGTGAGACGCTGGGCAGCAAGATGCGTGGCGACGT
GCAAAAGCTCAAGAGCTGCGGCGAGGCGACGCGATCGATTGTGCTGTCCA
ATATGTTCGATGCGAGCAACGAGGAGGCGGGCTTCGAGAAGGAGCTGTTG
GAGGAGGTTCGCGATGAGTGCGTGCGAAAGTACGGAAAGGTGGTTCATTT
GCACGTGGAGACGGAGTCGCATGGCATTGTTTACGTGCGGTTCAGCCGGG
TGGAGGAGGCGGTCAAGGCGCGGAACGATCTGAGCGGGCGGTGGTTTGGC
GGCAAGAAGATTGTGGCGGCGTTTGTGAAGGACGCGGACTACAGCGCGCG
GTTTTCGCAGGCGGAATGA

Coding sequence (CDS) from alignment at tig00004403_pilon:109807..111075+

>Gchil1461.t1 ID=Gchil1461.t1|Name=Gchil1461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00004403_pilon:109807..111075+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCTACTCTAGCGCACACAAGAGCGCCGGCTACGTCGAGTTTTA
CGACGAGCGTGCCGCGCAGCGCGCCGTCGACATGACGGGCACCCTTCTGT
GCGGCTTCCCCATCTCGGTGCGTCGCATCGCCGCCCCGGCGTCCGCCGCG
CCTACTCGCGTCACATCTGCCGCCGATGACGCGCTCGCACGCGCCGATCT
TCGCCGTCGCTCGCTTGCGCGTCCCAACACCGCCGCTGCCGCTGCCGCTG
CCGCGTATGACGCGCCTCCGTCGAGCGGGCTCCCACGCTGCAGCACCATT
GGCTGGTCGGCGCGCCGGCCCATTCGCGCCGTCGACGCAGACCCCGCCTT
GACATCGCCGCCTGCCGGCGCTACTGCGGCGCCGCTACAGCAGCTGGTGT
CCGTCGAGCAGCTCAAGCGACTGCTCAACCCGAACGAGCTGCCCGTGCCG
CGCGTGCCGCGCGCGCACGCTGGCGATCTGCTACGCGACGCTCACAGCGG
CGCAACTGTCGGTGCGCGGCGCGTGTGCGTCGGCTCCATCGCTCCTGAGC
TCAACGAGGCGGATGTGAAGGCTGTGTTCGACAAGTACGGCGCTGTTGGA
TCGGTGCAGTTTCAGCGCGATGCCAGTGGGCGAAGCAAGGGCGTTGCATT
CATCGAGTTTGGAAGCGCGCAGCAAGCGCGGCACGCACTGGAGGCGAATG
GACTGTCGCTTGCGTTCAACAAGTTGACTGTGGCGCTCGCGGCGACACAG
GACGATTGGCGCGGCGGCGATGCAGCATCGGCGCGGCCGCAGCCGTTTGT
GGGTCGCGTGCCGCTGCCGCTGGTGGACGTGAGTGGCGAAATCGACGAAG
GACGCTCCGGCGGGCTGGCCATGAACAGTGCGCAGCGCGTGATGCTGATG
CAGCAGCTATCTCGTGGTGAGACGCTGGGCAGCAAGATGCGTGGCGACGT
GCAAAAGCTCAAGAGCTGCGGCGAGGCGACGCGATCGATTGTGCTGTCCA
ATATGTTCGATGCGAGCAACGAGGAGGCGGGCTTCGAGAAGGAGCTGTTG
GAGGAGGTTCGCGATGAGTGCGTGCGAAAGTACGGAAAGGTGGTTCATTT
GCACGTGGAGACGGAGTCGCATGGCATTGTTTACGTGCGGTTCAGCCGGG
TGGAGGAGGCGGTCAAGGCGCGGAACGATCTGAGCGGGCGGTGGTTTGGC
GGCAAGAAGATTGTGGCGGCGTTTGTGAAGGACGCGGACTACAGCGCGCG
GTTTTCGCAGGCGGAATGA