Gchil1427.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1427.t1
Unique NameGchil1427.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:1001846..1002319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1283300.ATXB01000001_gene1189
PFAMsDUF839
Max annot lvl135618|Methylococcales
Evalue8.38e-11
EggNOG OGsCOG3211@1|root,COG3211@2|Bacteria,1R7E2@1224|Proteobacteria,1SCSQ@1236|Gammaproteobacteria,1XGF9@135618|Methylococcales
DescriptionBacterial protein of unknown function (DUF839)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1427Gchil1427Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 1001846..1002319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1427.t1.start1Gchil1427.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 1001846..1001848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1427.t1.CDS1Gchil1427.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1001846..1002319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1427.t1.exon1Gchil1427.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1001846..1002319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1427.t1.stop1Gchil1427.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 1002317..1002319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1427.t1Gchil1427.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 1001846..1002319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1427.t1 ID=Gchil1427.t1|Name=Gchil1427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=158bp
MVCLILLALSVLETLTAICSTFVTREETNFGLMVRNKFIYKSLSLLRIND
LKQPASEADSVPPEDATVANMRLKLAPGLRADYVTRNTGSKGDMMVFGPS
EDSYIELVICNEYVRSDLGDNPGMQRIFVETGHVDIIAFAIDRSDGVRTI
AWSNIYH*
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spliced messenger RNA

>Gchil1427.t1 ID=Gchil1427.t1|Name=Gchil1427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00004414_pilon:1001846..1002319+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTGTCTCATTCTGCTAGCCCTTTCTGTATTAGAGACCTTGACCGC
CATTTGCTCCACCTTCGTTACGCGAGAGGAAACCAATTTCGGACTAATGG
TGCGAAACAAGTTTATTTACAAGTCTTTGAGCCTTCTCAGAATCAATGAT
CTTAAGCAGCCAGCTTCTGAGGCCGATTCGGTCCCACCGGAGGATGCCAC
TGTCGCCAACATGCGCCTAAAGCTCGCCCCGGGTCTAAGGGCTGACTACG
TCACCCGTAACACCGGCTCCAAAGGTGACATGATGGTATTCGGGCCAAGT
GAGGATTCTTACATTGAGCTTGTCATCTGCAACGAATATGTTCGCTCTGA
TCTCGGTGACAACCCGGGTATGCAGAGAATCTTCGTCGAGACGGGCCATG
TTGATATCATTGCCTTCGCCATCGATCGTAGTGACGGTGTCCGTACAATC
GCTTGGAGTAATATCTATCATTGA
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protein sequence of Gchil1427.t1

>Gchil1427.t1 ID=Gchil1427.t1|Name=Gchil1427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=158bp
MVCLILLALSVLETLTAICSTFVTREETNFGLMVRNKFIYKSLSLLRIND
LKQPASEADSVPPEDATVANMRLKLAPGLRADYVTRNTGSKGDMMVFGPS
EDSYIELVICNEYVRSDLGDNPGMQRIFVETGHVDIIAFAIDRSDGVRTI
AWSNIYH*
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mRNA from alignment at tig00004414_pilon:1001846..1002319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1427.t1 ID=Gchil1427.t1|Name=Gchil1427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00004414_pilon:1001846..1002319+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTGTCTCATTCTGCTAGCCCTTTCTGTATTAGAGACCTTGACCGC
CATTTGCTCCACCTTCGTTACGCGAGAGGAAACCAATTTCGGACTAATGG
TGCGAAACAAGTTTATTTACAAGTCTTTGAGCCTTCTCAGAATCAATGAT
CTTAAGCAGCCAGCTTCTGAGGCCGATTCGGTCCCACCGGAGGATGCCAC
TGTCGCCAACATGCGCCTAAAGCTCGCCCCGGGTCTAAGGGCTGACTACG
TCACCCGTAACACCGGCTCCAAAGGTGACATGATGGTATTCGGGCCAAGT
GAGGATTCTTACATTGAGCTTGTCATCTGCAACGAATATGTTCGCTCTGA
TCTCGGTGACAACCCGGGTATGCAGAGAATCTTCGTCGAGACGGGCCATG
TTGATATCATTGCCTTCGCCATCGATCGTAGTGACGGTGTCCGTACAATC
GCTTGGAGTAATATCTATCATTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:1001846..1002319+

>Gchil1427.t1 ID=Gchil1427.t1|Name=Gchil1427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00004414_pilon:1001846..1002319+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTGTCTCATTCTGCTAGCCCTTTCTGTATTAGAGACCTTGACCGC
CATTTGCTCCACCTTCGTTACGCGAGAGGAAACCAATTTCGGACTAATGG
TGCGAAACAAGTTTATTTACAAGTCTTTGAGCCTTCTCAGAATCAATGAT
CTTAAGCAGCCAGCTTCTGAGGCCGATTCGGTCCCACCGGAGGATGCCAC
TGTCGCCAACATGCGCCTAAAGCTCGCCCCGGGTCTAAGGGCTGACTACG
TCACCCGTAACACCGGCTCCAAAGGTGACATGATGGTATTCGGGCCAAGT
GAGGATTCTTACATTGAGCTTGTCATCTGCAACGAATATGTTCGCTCTGA
TCTCGGTGACAACCCGGGTATGCAGAGAATCTTCGTCGAGACGGGCCATG
TTGATATCATTGCCTTCGCCATCGATCGTAGTGACGGTGTCCGTACAATC
GCTTGGAGTAATATCTATCATTGA
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