Gchil1424.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1424.t1
Unique NameGchil1424.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:926051..928221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1424Gchil1424Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 926051..928221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1Gchil1424.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 926051..928221 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1.stop1Gchil1424.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 926051..926053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1.CDS1Gchil1424.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 926051..926907 -
Gchil1424.t1.CDS2Gchil1424.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 927087..927161 -
Gchil1424.t1.CDS3Gchil1424.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 927903..928221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1.exon1Gchil1424.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 926051..926907 -
Gchil1424.t1.exon2Gchil1424.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 927087..927161 -
Gchil1424.t1.exon3Gchil1424.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 927903..928221 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1.intron1Gchil1424.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 926908..927086 -
Gchil1424.t1.intron2Gchil1424.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 927162..927902 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1424.t1.start1Gchil1424.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 928219..928221 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1424.t1 ID=Gchil1424.t1|Name=Gchil1424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=417bp
MWTFYSNEGIFVGNDLHRHVVIAKRHSTLTCQHPVVYKNTELPLLLVKYT
VGDHISYDTKAENQHERRDCAVVFHKHKKLERHSIFRKRIKFDDEVKVLY
RQYLTVNYSSDLISGGFRSVSASLIGLSAVFLTMITVLYVLSLLVCLNSA
SFLSGRQQLSPQMIRSLLQSKGVQPFFTRQSNDVLRTSARLEQPMCFLLP
IERSVALAARFEGPLMQAGYFDSRNEFFRLALGWGETRIEHSRLQALEYF
KDAFGLDGSSLKYDSTFGLYGSDKLGFGAYVLNVTFVQTADSDILVPCPN
VTAVLGGWVLFGVDITYPKIPFGTGPQTIAGDSSVYVMYLVGQHGTRMVT
KIQMKARKPQVCTLNLCPLVAATEVIDDPFDTNTGCLDAIIVEQEVAPGI
SREFHTFVLTFPGMSC*
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spliced messenger RNA

>Gchil1424.t1 ID=Gchil1424.t1|Name=Gchil1424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00004414_pilon:926051..928221- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACATTTTATTCTAACGAGGGCATATTCGTTGGAAATGACCTCCA
CAGACACGTTGTAATAGCAAAAAGACACTCCACGTTGACCTGTCAACACC
CTGTAGTTTACAAAAATACCGAATTACCGCTACTCCTTGTAAAGTATACG
GTTGGCGACCACATTTCATATGATACCAAAGCAGAAAACCAACACGAGCG
CCGGGATTGCGCAGTTGTTTTTCATAAGCACAAAAAACTAGAAAGACATT
CAATTTTCAGGAAGAGAATTAAATTTGATGACGAGGTGAAGGTTCTTTAC
CGTCAGTATCTGACGGTAAATTACTCCTCGGATTTAATCTCCGGGGGTTT
TCGTTCTGTTTCCGCGTCGTTAATTGGCCTCTCTGCTGTGTTTCTCACCA
TGATCACAGTTTTATACGTTCTTTCTTTGCTAGTATGCTTGAATTCAGCT
TCGTTTCTTTCTGGTCGCCAACAACTTTCCCCACAAATGATTAGATCCCT
GCTTCAATCGAAGGGGGTACAGCCATTCTTTACCAGACAATCGAACGATG
TACTTCGGACATCAGCACGTCTCGAGCAACCAATGTGTTTCTTGTTGCCG
ATTGAGAGAAGCGTTGCGCTGGCAGCCAGGTTTGAAGGCCCACTAATGCA
AGCAGGATACTTTGACTCCCGTAATGAGTTCTTCCGCCTCGCGCTCGGCT
GGGGCGAAACACGAATCGAACACTCTCGACTGCAGGCGTTGGAATACTTC
AAAGACGCGTTTGGTCTGGATGGATCGTCGCTTAAGTACGACAGCACATT
TGGCTTGTACGGTTCCGACAAGTTAGGTTTTGGCGCATACGTGTTGAATG
TTACGTTTGTACAAACGGCCGACTCCGATATACTGGTTCCCTGCCCGAAT
GTTACTGCCGTACTGGGTGGGTGGGTGCTATTCGGAGTCGATATCACTTA
CCCCAAGATTCCTTTCGGGACGGGGCCCCAAACGATTGCTGGTGACTCTT
CGGTATACGTGATGTATCTTGTGGGACAGCACGGGACCAGGATGGTGACG
AAGATTCAAATGAAGGCCAGAAAGCCGCAAGTCTGCACTCTCAATTTGTG
CCCTCTTGTTGCTGCCACGGAGGTCATTGACGATCCTTTTGATACAAATA
CAGGATGCTTAGATGCCATCATTGTGGAACAGGAGGTTGCTCCGGGGATA
AGTAGAGAATTTCACACTTTCGTGTTGACATTCCCGGGCATGAGTTGTTA
G
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protein sequence of Gchil1424.t1

>Gchil1424.t1 ID=Gchil1424.t1|Name=Gchil1424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=417bp
MWTFYSNEGIFVGNDLHRHVVIAKRHSTLTCQHPVVYKNTELPLLLVKYT
VGDHISYDTKAENQHERRDCAVVFHKHKKLERHSIFRKRIKFDDEVKVLY
RQYLTVNYSSDLISGGFRSVSASLIGLSAVFLTMITVLYVLSLLVCLNSA
SFLSGRQQLSPQMIRSLLQSKGVQPFFTRQSNDVLRTSARLEQPMCFLLP
IERSVALAARFEGPLMQAGYFDSRNEFFRLALGWGETRIEHSRLQALEYF
KDAFGLDGSSLKYDSTFGLYGSDKLGFGAYVLNVTFVQTADSDILVPCPN
VTAVLGGWVLFGVDITYPKIPFGTGPQTIAGDSSVYVMYLVGQHGTRMVT
KIQMKARKPQVCTLNLCPLVAATEVIDDPFDTNTGCLDAIIVEQEVAPGI
SREFHTFVLTFPGMSC*
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mRNA from alignment at tig00004414_pilon:926051..928221-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1424.t1 ID=Gchil1424.t1|Name=Gchil1424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2171bp|location=Sequence derived from alignment at tig00004414_pilon:926051..928221- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGACATTTTATTCTAACGAGGGCATATTCGTTGGAAATGACCTCCA
CAGACACGTTGTAATAGCAAAAAGACACTCCACGTTGACCTGTCAACACC
CTGTAGTTTACAAAAATACCGAATTACCGCTACTCCTTGTAAAGTATACG
GTTGGCGACCACATTTCATATGATACCAAAGCAGAAAACCAACACGAGCG
CCGGGATTGCGCAGTTGTTTTTCATAAGCACAAAAAACTAGAAAGACATT
CAATTTTCAGGAAGAGAATTAAATTTGATGACGAGGTGAAGGTTCTTTAC
CGTCAGTATCTGACGGTAAGTAAGAGGGACTTTCTAATGAACCGGACTTC
TCGTCACTGCTAATCTTTAGACTCACCGGGGCGTAGTTGGCATCCACTTG
ATTGGATGTGGCGTAGCAAAGTGAATAATGTCTTGGTTGTTGCACAACAC
TTTCTTTTCTCATGCTAAACTTCAAACGTTCAAGGGCTTAACACCCCCGC
CCCCCCCCCCACTTACAAAGATATTCAACGGTGCAAGAGCGACGTTTTAT
CCGAGCCAATGGAAATGAAGCTTATCAAATTCAACTCAGGTGCTGCCTCT
CTAACTTTCAAAGGGAACAGACCGCTGAATCGGAGGAGAGAGGAGATGTC
CTGAGGTTCAATATTGCAAAAACCCTCAAAAAATTCCTCGTCCACTGGCC
CCACGTTTGACCGGAACTGCTGGAGCAATGAGATGTACCAATGAAATGCA
CGAATTTGTGCAGTACGAAATCCTTTTCTGTCAGAAGCTTTCGTCCTGTT
CTGATACGCCTTTTCGTCAATAACTGGGCTAGGATGTGCCACCTTGCAAA
CGGCAATGACGTTTCGTGTTCTGTGAGCTACATTTGGTTGCCCAATTCGC
TACATTTATTAAGTATGAGTGAAATCCACAAGCGGCTGCGGATATCGGGG
CACAAGACGGCCAATTATAAGCACGTATCTGCTCAAGTTCTCGCCGAAAT
GAGGCGCAACTGGTGCTGATTCAAATATCCTCAGGTCCACCGGCCATGTG
CATCCTCCAGATTACTCCTCGGATTTAATCTCCGGGGGTTTTCGTTCTGT
TTCCGCGTCGTTAATTGGCCTCTCTGCTGTGTTTCGTAAGTACCATACTC
ATCAAAGATGCAACCGCTTTCAATGTGAAATTCTGTCACGTATAAAGTGC
GGAAGTACAAGAAAGGGAGGCGAAAGCGCAACCGTCGCTCAAGAAACCGA
CTCGGCTTTCCAGCGATTGCATCATGTCCACCCCTCATCGAAACTAAAAC
GCAAACTTGCCAAGTCACCATGATCACAGTTTTATACGTTCTTTCTTTGC
TAGTATGCTTGAATTCAGCTTCGTTTCTTTCTGGTCGCCAACAACTTTCC
CCACAAATGATTAGATCCCTGCTTCAATCGAAGGGGGTACAGCCATTCTT
TACCAGACAATCGAACGATGTACTTCGGACATCAGCACGTCTCGAGCAAC
CAATGTGTTTCTTGTTGCCGATTGAGAGAAGCGTTGCGCTGGCAGCCAGG
TTTGAAGGCCCACTAATGCAAGCAGGATACTTTGACTCCCGTAATGAGTT
CTTCCGCCTCGCGCTCGGCTGGGGCGAAACACGAATCGAACACTCTCGAC
TGCAGGCGTTGGAATACTTCAAAGACGCGTTTGGTCTGGATGGATCGTCG
CTTAAGTACGACAGCACATTTGGCTTGTACGGTTCCGACAAGTTAGGTTT
TGGCGCATACGTGTTGAATGTTACGTTTGTACAAACGGCCGACTCCGATA
TACTGGTTCCCTGCCCGAATGTTACTGCCGTACTGGGTGGGTGGGTGCTA
TTCGGAGTCGATATCACTTACCCCAAGATTCCTTTCGGGACGGGGCCCCA
AACGATTGCTGGTGACTCTTCGGTATACGTGATGTATCTTGTGGGACAGC
ACGGGACCAGGATGGTGACGAAGATTCAAATGAAGGCCAGAAAGCCGCAA
GTCTGCACTCTCAATTTGTGCCCTCTTGTTGCTGCCACGGAGGTCATTGA
CGATCCTTTTGATACAAATACAGGATGCTTAGATGCCATCATTGTGGAAC
AGGAGGTTGCTCCGGGGATAAGTAGAGAATTTCACACTTTCGTGTTGACA
TTCCCGGGCATGAGTTGTTAG
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Coding sequence (CDS) from alignment at tig00004414_pilon:926051..928221-

>Gchil1424.t1 ID=Gchil1424.t1|Name=Gchil1424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00004414_pilon:926051..928221- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGACATTTTATTCTAACGAGGGCATATTCGTTGGAAATGACCTCCA
CAGACACGTTGTAATAGCAAAAAGACACTCCACGTTGACCTGTCAACACC
CTGTAGTTTACAAAAATACCGAATTACCGCTACTCCTTGTAAAGTATACG
GTTGGCGACCACATTTCATATGATACCAAAGCAGAAAACCAACACGAGCG
CCGGGATTGCGCAGTTGTTTTTCATAAGCACAAAAAACTAGAAAGACATT
CAATTTTCAGGAAGAGAATTAAATTTGATGACGAGGTGAAGGTTCTTTAC
CGTCAGTATCTGACGGTAAATTACTCCTCGGATTTAATCTCCGGGGGTTT
TCGTTCTGTTTCCGCGTCGTTAATTGGCCTCTCTGCTGTGTTTCTCACCA
TGATCACAGTTTTATACGTTCTTTCTTTGCTAGTATGCTTGAATTCAGCT
TCGTTTCTTTCTGGTCGCCAACAACTTTCCCCACAAATGATTAGATCCCT
GCTTCAATCGAAGGGGGTACAGCCATTCTTTACCAGACAATCGAACGATG
TACTTCGGACATCAGCACGTCTCGAGCAACCAATGTGTTTCTTGTTGCCG
ATTGAGAGAAGCGTTGCGCTGGCAGCCAGGTTTGAAGGCCCACTAATGCA
AGCAGGATACTTTGACTCCCGTAATGAGTTCTTCCGCCTCGCGCTCGGCT
GGGGCGAAACACGAATCGAACACTCTCGACTGCAGGCGTTGGAATACTTC
AAAGACGCGTTTGGTCTGGATGGATCGTCGCTTAAGTACGACAGCACATT
TGGCTTGTACGGTTCCGACAAGTTAGGTTTTGGCGCATACGTGTTGAATG
TTACGTTTGTACAAACGGCCGACTCCGATATACTGGTTCCCTGCCCGAAT
GTTACTGCCGTACTGGGTGGGTGGGTGCTATTCGGAGTCGATATCACTTA
CCCCAAGATTCCTTTCGGGACGGGGCCCCAAACGATTGCTGGTGACTCTT
CGGTATACGTGATGTATCTTGTGGGACAGCACGGGACCAGGATGGTGACG
AAGATTCAAATGAAGGCCAGAAAGCCGCAAGTCTGCACTCTCAATTTGTG
CCCTCTTGTTGCTGCCACGGAGGTCATTGACGATCCTTTTGATACAAATA
CAGGATGCTTAGATGCCATCATTGTGGAACAGGAGGTTGCTCCGGGGATA
AGTAGAGAATTTCACACTTTCGTGTTGACATTCCCGGGCATGAGTTGTTA
G
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