Gchil1423.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1423.t1
Unique NameGchil1423.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:914036..914757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES95331
PFAMsANF_receptor,Lig_chan,SBP_bac_3
Max annot lvl35493|Streptophyta
KEGG koko:K05387
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
GOsGO:0001101,GO:0002218,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0004888,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007267,GO:0008066,GO:0008150,GO:0008324,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009682,GO:0009719,GO:0009725,GO:0009753,GO:0009755,GO:0009864,GO:0009867,GO:0009987,GO:0010033,GO:0010243,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0019722,GO:0019932,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0031347,GO:0031349,GO:0032870,GO:0034220,GO:0035556,GO:0038023,GO:0042221,GO:0042742,GO:0043200,GO:0043207,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0046873,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0070588,GO:0070838,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071395,GO:0071417,GO:0071495,GO:0071944,GO:0072511,GO:0080134,GO:0098542,GO:0098655,GO:0098660,GO:0098662,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Evalue8.77e-08
EggNOG OGsCOG2801@1|root,KOG1052@1|root,KOG0017@2759|Eukaryota,KOG1052@2759|Eukaryota,37J5Z@33090|Viridiplantae,3G89R@35493|Streptophyta,4JG8M@91835|fabids
DescriptionGlutamate-gated receptor that probably acts as non- selective cation channel
COG categoryEPT
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1423Gchil1423Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 914036..914757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1Gchil1423.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 914036..914757 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1.stop1Gchil1423.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 914036..914038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1.CDS1Gchil1423.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 914036..914067 -
Gchil1423.t1.CDS2Gchil1423.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 914169..914757 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1.exon1Gchil1423.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 914036..914067 -
Gchil1423.t1.exon2Gchil1423.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 914169..914757 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1.intron1Gchil1423.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 914068..914168 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1423.t1.start1Gchil1423.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 914755..914757 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1423.t1 ID=Gchil1423.t1|Name=Gchil1423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp
MDEDLSKKIPRYNARHGEDFTLWTMGFEALLESKELLKIVRRNSLGEDVS
QPVPIDLALKISKARIYLVQCLGDKPLRTIATERKNPYTIYQKFRERYAT
VNAATRVQLQTKVHNMKYVPGKTMSEFVDEFESFFNRLKGMCSPVEDSMQ
VAILLSSFGNMDETVYGAVISALQSMPDAELTWERATARLLQEFESQGAY
EESMLE*
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spliced messenger RNA

>Gchil1423.t1 ID=Gchil1423.t1|Name=Gchil1423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004414_pilon:914036..914757- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGGATCTATCGAAGAAAATTCCACGCTATAACGCTCGTCATGG
GGAGGATTTTACGTTATGGACTATGGGATTTGAAGCACTGCTCGAATCAA
AGGAGCTGCTGAAAATTGTGAGGCGTAACTCCCTAGGAGAAGATGTGAGT
CAACCTGTGCCGATTGATTTGGCATTGAAGATCTCTAAAGCCCGGATATA
CCTCGTGCAATGTCTTGGTGATAAGCCATTGAGAACTATCGCAACTGAAA
GAAAGAATCCGTATACAATATATCAAAAGTTCCGGGAAAGGTATGCAACA
GTGAATGCCGCTACTAGGGTCCAACTGCAGACAAAAGTGCATAACATGAA
ATACGTTCCAGGCAAGACAATGTCCGAGTTTGTTGATGAGTTTGAATCGT
TCTTCAATAGGCTCAAAGGAATGTGCAGCCCTGTAGAAGATTCAATGCAA
GTAGCAATACTACTCTCAAGCTTTGGGAACATGGATGAGACGGTCTATGG
CGCGGTTATCTCAGCACTACAGTCCATGCCAGACGCCGAACTTACATGGG
AACGGGCAACTGCACGTCTTTTGCAGGAGTTCGAATCTCAAGGCGCATAT
GAAGAATCAATGTTGGAGTAA
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protein sequence of Gchil1423.t1

>Gchil1423.t1 ID=Gchil1423.t1|Name=Gchil1423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=207bp
MDEDLSKKIPRYNARHGEDFTLWTMGFEALLESKELLKIVRRNSLGEDVS
QPVPIDLALKISKARIYLVQCLGDKPLRTIATERKNPYTIYQKFRERYAT
VNAATRVQLQTKVHNMKYVPGKTMSEFVDEFESFFNRLKGMCSPVEDSMQ
VAILLSSFGNMDETVYGAVISALQSMPDAELTWERATARLLQEFESQGAY
EESMLE*
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mRNA from alignment at tig00004414_pilon:914036..914757-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1423.t1 ID=Gchil1423.t1|Name=Gchil1423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=722bp|location=Sequence derived from alignment at tig00004414_pilon:914036..914757- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGATCTATCGAAGAAAATTCCACGCTATAACGCTCGTCATGG
GGAGGATTTTACGTTATGGACTATGGGATTTGAAGCACTGCTCGAATCAA
AGGAGCTGCTGAAAATTGTGAGGCGTAACTCCCTAGGAGAAGATGTGAGT
CAACCTGTGCCGATTGATTTGGCATTGAAGATCTCTAAAGCCCGGATATA
CCTCGTGCAATGTCTTGGTGATAAGCCATTGAGAACTATCGCAACTGAAA
GAAAGAATCCGTATACAATATATCAAAAGTTCCGGGAAAGGTATGCAACA
GTGAATGCCGCTACTAGGGTCCAACTGCAGACAAAAGTGCATAACATGAA
ATACGTTCCAGGCAAGACAATGTCCGAGTTTGTTGATGAGTTTGAATCGT
TCTTCAATAGGCTCAAAGGAATGTGCAGCCCTGTAGAAGATTCAATGCAA
GTAGCAATACTACTCTCAAGCTTTGGGAACATGGATGAGACGGTCTATGG
CGCGGTTATCTCAGCACTACAGTCCATGCCAGACGCCGAACTTACATGGG
AACGGGCAACTGCACGTCTTTTGCAGGAGTTCGAATCTCGTATCTCCAAT
GCAACATCTTTCCATGAATCTGGAGTTCCTTTAGGCTCTGAGAAGGCGCT
CAGATCAAAGTTTCGGGGCAAATTTTTCAACTGCGGTAAGAAGGCGCATA
TGAAGAATCAATGTTGGAGTAA
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Coding sequence (CDS) from alignment at tig00004414_pilon:914036..914757-

>Gchil1423.t1 ID=Gchil1423.t1|Name=Gchil1423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00004414_pilon:914036..914757- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGATCTATCGAAGAAAATTCCACGCTATAACGCTCGTCATGG
GGAGGATTTTACGTTATGGACTATGGGATTTGAAGCACTGCTCGAATCAA
AGGAGCTGCTGAAAATTGTGAGGCGTAACTCCCTAGGAGAAGATGTGAGT
CAACCTGTGCCGATTGATTTGGCATTGAAGATCTCTAAAGCCCGGATATA
CCTCGTGCAATGTCTTGGTGATAAGCCATTGAGAACTATCGCAACTGAAA
GAAAGAATCCGTATACAATATATCAAAAGTTCCGGGAAAGGTATGCAACA
GTGAATGCCGCTACTAGGGTCCAACTGCAGACAAAAGTGCATAACATGAA
ATACGTTCCAGGCAAGACAATGTCCGAGTTTGTTGATGAGTTTGAATCGT
TCTTCAATAGGCTCAAAGGAATGTGCAGCCCTGTAGAAGATTCAATGCAA
GTAGCAATACTACTCTCAAGCTTTGGGAACATGGATGAGACGGTCTATGG
CGCGGTTATCTCAGCACTACAGTCCATGCCAGACGCCGAACTTACATGGG
AACGGGCAACTGCACGTCTTTTGCAGGAGTTCGAATCTCAAGGCGCATAT
GAAGAATCAATGTTGGAGTAA
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