Gchil1422.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1422.t1
Unique Name	Gchil1422.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:889598..891250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_012422-tr
PFAMs	RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	6.84e-97
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1422	Gchil1422	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 889598..891250 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1422.t1.start1	Gchil1422.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 889598..889600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1422.t1.CDS1	Gchil1422.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 889598..891250 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1422.t1.exon1	Gchil1422.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 889598..891250 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1422.t1.stop1	Gchil1422.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 891248..891250 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1422.t1	Gchil1422.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 889598..891250 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:889598..891250+
coding sequence from alignment at tig00004414_pilon:889598..891250+

mRNA sequence

>Gchil1422.t1 ID=Gchil1422.t1|Name=Gchil1422.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MLEEGVIEAAQSAWASPVVLVPKPDGSLRFCSDYRKLNAVTVRDTFLLPR
MDECIDSLGEANVFTTLDANSGYWKVPIAEEDQDKTAFACLVGLYRFKRM
PFGFRNEPATFQRTLDIFLSRYKWKTCLVYLDDVIIFSQDVEIHLRHVEE
ILKALQSAGITLKFKKCEWFAGTVRYLGHVIKLGQLAIQEAQTAALHEVQ
PPSTQKQLRSFLGLRNFYRRFVPQYSHIAAPLNAKLRKGQPVQLEQFRQA
EVEAFETLKTKIITAPVLALPIPNLPYSVDTDSIEYQVRCALFQTHPDGE
RKPIGYWSRSLNAADKKYSVSEKECLAVVWALTTLRPYLQGERFTVNTDH
SSLRLLLSITDPSGRLTRWHLRLSEFDFEVKYKKGLANVQAGALSRLKTL
GETQGEIDEEIPCFYMETHSPSFEEEEKETLDDYSDADPFLSLADTDPSV
QLERISCTELLNEQHADTFCASIRSRLNGGGGAPFFTRFTRNTVKTCQKS
WSNRDSTRLEESSTPSGTLQQAVWSSRRNEVVHDSKKRFLLAYFGNGLPC
*

spliced messenger RNA

>Gchil1422.t1 ID=Gchil1422.t1|Name=Gchil1422.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004414_pilon:889598..891250+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgctggaagaaggagtaatcgaagcagctcaatctgcttgggcctcacc
agtggtgctggttccaaaacctgatggttctttacgattctgtagcgatt
atcgaaaactgaacgcagttacagttcgagatacattcctgttgcctcga
atggacgaatgtattgacagcttaggagaagcgaacgtgttcaccacgtt
ggacgccaactccggctattggaaggtgcctatagcggaagaagaccaag
ataaaaccgcatttgcgtgtctcgtcggtctctaccgtttcaaaaggatg
ccatttggatttaggaatgaaccggctactttccagcgtactctggacat
ttttctctcaagatacaagtggaagacttgtttagtctatttggacgatg
tgatcatcttttcccaggatgtggaaatccatttacgacatgtcgaggag
atcctcaaagcactacagagcgcaggtatcaccttgaaattcaagaaatg
cgaatggttcgctggcaccgtccggtacttaggacatgtgatcaagctgg
gacagcttgccattcaagaggcacaaacagcggctctccacgaagtacaa
cctccgtcgacacagaagcaattgcgttctttcctcggcttgcgcaactt
ctaccgacgattcgtgccgcaatactcgcatatagcggcaccgctcaatg
caaagctgcgtaaaggacaaccggtacagctggaacaattcagacaagct
gaagtggaagcgttcgaaacgctaaagacaaagattattacagccccagt
cttggcgctgcccatccccaacctgccatactcagtggataccgactcta
tcgagtaccaagtaaggtgtgccctttttcaaacacaccctgatggtgaa
cgcaaacccattggttactggtcaagatcgctgaacgcagctgacaagaa
gtattcagtttcagaaaaggaatgccttgcagtcgtttgggctctaacca
cattgcgaccgtatctccaaggagaacgttttaccgtcaacacggatcat
tcgtctctacgattgttactgtccattacagacccgtctggtcgtctcac
acgatggcacttacgcctttctgaattcgatttcgaagtgaagtataaga
agggattggccaatgtccaagctggcgcgctatcgcgactcaaaacactg
ggcgaaacccaaggcgaaatcgatgaagagataccttgcttctacatgga
gacccattcaccatcttttgaagaagaggaaaaagagacccttgatgatt
attcggatgcagacccgttcctttcattagcagacactgacccttcagtt
caactcgagcgaatctcgtgcactgagctcctcaatgagcaacacgccga
tacgttttgtgcgtcgatacgctctcgtcttaacggggggggtggagctc
cttttttcactcgattcactaggaatactgttaagacatgtcaaaaatca
tggtcaaatcgtgattccacacgtcttgaagagtcgagtactccatctgg
cacactacagcaggctgtctggtcatccaggaggaacgaagttgttcatg
actctaagaagagatttctactggcgtactttggcaatggactgccatgc
taa

protein sequence of Gchil1422.t1

>Gchil1422.t1 ID=Gchil1422.t1|Name=Gchil1422.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MLEEGVIEAAQSAWASPVVLVPKPDGSLRFCSDYRKLNAVTVRDTFLLPR
MDECIDSLGEANVFTTLDANSGYWKVPIAEEDQDKTAFACLVGLYRFKRM
PFGFRNEPATFQRTLDIFLSRYKWKTCLVYLDDVIIFSQDVEIHLRHVEE
ILKALQSAGITLKFKKCEWFAGTVRYLGHVIKLGQLAIQEAQTAALHEVQ
PPSTQKQLRSFLGLRNFYRRFVPQYSHIAAPLNAKLRKGQPVQLEQFRQA
EVEAFETLKTKIITAPVLALPIPNLPYSVDTDSIEYQVRCALFQTHPDGE
RKPIGYWSRSLNAADKKYSVSEKECLAVVWALTTLRPYLQGERFTVNTDH
SSLRLLLSITDPSGRLTRWHLRLSEFDFEVKYKKGLANVQAGALSRLKTL
GETQGEIDEEIPCFYMETHSPSFEEEEKETLDDYSDADPFLSLADTDPSV
QLERISCTELLNEQHADTFCASIRSRLNGGGGAPFFTRFTRNTVKTCQKS
WSNRDSTRLEESSTPSGTLQQAVWSSRRNEVVHDSKKRFLLAYFGNGLPC
*

mRNA from alignment at tig00004414_pilon:889598..891250+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1422.t1 ID=Gchil1422.t1|Name=Gchil1422.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004414_pilon:889598..891250+ (Gracilaria chilensis NLEC103_M9 male)
atgctggaagaaggagtaatcgaagcagctcaatctgcttgggcctcacc
agtggtgctggttccaaaacctgatggttctttacgattctgtagcgatt
atcgaaaactgaacgcagttacagttcgagatacattcctgttgcctcga
atggacgaatgtattgacagcttaggagaagcgaacgtgttcaccacgtt
ggacgccaactccggctattggaaggtgcctatagcggaagaagaccaag
ataaaaccgcatttgcgtgtctcgtcggtctctaccgtttcaaaaggatg
ccatttggatttaggaatgaaccggctactttccagcgtactctggacat
ttttctctcaagatacaagtggaagacttgtttagtctatttggacgatg
tgatcatcttttcccaggatgtggaaatccatttacgacatgtcgaggag
atcctcaaagcactacagagcgcaggtatcaccttgaaattcaagaaatg
cgaatggttcgctggcaccgtccggtacttaggacatgtgatcaagctgg
gacagcttgccattcaagaggcacaaacagcggctctccacgaagtacaa
cctccgtcgacacagaagcaattgcgttctttcctcggcttgcgcaactt
ctaccgacgattcgtgccgcaatactcgcatatagcggcaccgctcaatg
caaagctgcgtaaaggacaaccggtacagctggaacaattcagacaagct
gaagtggaagcgttcgaaacgctaaagacaaagattattacagccccagt
cttggcgctgcccatccccaacctgccatactcagtggataccgactcta
tcgagtaccaagtaaggtgtgccctttttcaaacacaccctgatggtgaa
cgcaaacccattggttactggtcaagatcgctgaacgcagctgacaagaa
gtattcagtttcagaaaaggaatgccttgcagtcgtttgggctctaacca
cattgcgaccgtatctccaaggagaacgttttaccgtcaacacggatcat
tcgtctctacgattgttactgtccattacagacccgtctggtcgtctcac
acgatggcacttacgcctttctgaattcgatttcgaagtgaagtataaga
agggattggccaatgtccaagctggcgcgctatcgcgactcaaaacactg
ggcgaaacccaaggcgaaatcgatgaagagataccttgcttctacatgga
gacccattcaccatcttttgaagaagaggaaaaagagacccttgatgatt
attcggatgcagacccgttcctttcattagcagacactgacccttcagtt
caactcgagcgaatctcgtgcactgagctcctcaatgagcaacacgccga
tacgttttgtgcgtcgatacgctctcgtcttaacggggggggtggagctc
cttttttcactcgattcactaggaatactgttaagacatgtcaaaaatca
tggtcaaatcgtgattccacacgtcttgaagagtcgagtactccatctgg
cacactacagcaggctgtctggtcatccaggaggaacgaagttgttcatg
actctaagaagagatttctactggcgtactttggcaatggactgccatgc
taa

Coding sequence (CDS) from alignment at tig00004414_pilon:889598..891250+

>Gchil1422.t1 ID=Gchil1422.t1|Name=Gchil1422.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004414_pilon:889598..891250+ (Gracilaria chilensis NLEC103_M9 male)
atgctggaagaaggagtaatcgaagcagctcaatctgcttgggcctcacc
agtggtgctggttccaaaacctgatggttctttacgattctgtagcgatt
atcgaaaactgaacgcagttacagttcgagatacattcctgttgcctcga
atggacgaatgtattgacagcttaggagaagcgaacgtgttcaccacgtt
ggacgccaactccggctattggaaggtgcctatagcggaagaagaccaag
ataaaaccgcatttgcgtgtctcgtcggtctctaccgtttcaaaaggatg
ccatttggatttaggaatgaaccggctactttccagcgtactctggacat
ttttctctcaagatacaagtggaagacttgtttagtctatttggacgatg
tgatcatcttttcccaggatgtggaaatccatttacgacatgtcgaggag
atcctcaaagcactacagagcgcaggtatcaccttgaaattcaagaaatg
cgaatggttcgctggcaccgtccggtacttaggacatgtgatcaagctgg
gacagcttgccattcaagaggcacaaacagcggctctccacgaagtacaa
cctccgtcgacacagaagcaattgcgttctttcctcggcttgcgcaactt
ctaccgacgattcgtgccgcaatactcgcatatagcggcaccgctcaatg
caaagctgcgtaaaggacaaccggtacagctggaacaattcagacaagct
gaagtggaagcgttcgaaacgctaaagacaaagattattacagccccagt
cttggcgctgcccatccccaacctgccatactcagtggataccgactcta
tcgagtaccaagtaaggtgtgccctttttcaaacacaccctgatggtgaa
cgcaaacccattggttactggtcaagatcgctgaacgcagctgacaagaa
gtattcagtttcagaaaaggaatgccttgcagtcgtttgggctctaacca
cattgcgaccgtatctccaaggagaacgttttaccgtcaacacggatcat
tcgtctctacgattgttactgtccattacagacccgtctggtcgtctcac
acgatggcacttacgcctttctgaattcgatttcgaagtgaagtataaga
agggattggccaatgtccaagctggcgcgctatcgcgactcaaaacactg
ggcgaaacccaaggcgaaatcgatgaagagataccttgcttctacatgga
gacccattcaccatcttttgaagaagaggaaaaagagacccttgatgatt
attcggatgcagacccgttcctttcattagcagacactgacccttcagtt
caactcgagcgaatctcgtgcactgagctcctcaatgagcaacacgccga
tacgttttgtgcgtcgatacgctctcgtcttaacggggggggtggagctc
cttttttcactcgattcactaggaatactgttaagacatgtcaaaaatca
tggtcaaatcgtgattccacacgtcttgaagagtcgagtactccatctgg
cacactacagcaggctgtctggtcatccaggaggaacgaagttgttcatg
actctaagaagagatttctactggcgtactttggcaatggactgccatgc
taa