Gchil1420.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1420.t1
Unique NameGchil1420.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length595
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:886152..887936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1420Gchil1420Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 886152..887936 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1420.t1.start1Gchil1420.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 886152..886154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1420.t1.CDS1Gchil1420.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 886152..887936 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1420.t1.exon1Gchil1420.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 886152..887936 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1420.t1.stop1Gchil1420.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 887934..887936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1420.t1Gchil1420.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 886152..887936 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1420.t1 ID=Gchil1420.t1|Name=Gchil1420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=595bp
MPKTRSQSSSARPGPARPPPKPRLASSVEAGERLYRQAMSRSRSVNDERD
LSDVPAPVVAAATPTTEAVVDLEVVGPQEEDELRREVRCLKSESSAWSVR
MVALESQIAALIADVEQIRSAHQAFLRQDDGKQVSASVKTLREDLNHLLE
RYGNTPDALPGLTVDVEEVLTRVNPRLERLEAAVHAQTAAKTVVLEEEGA
LLKEARSKKSKSRRKKRKSARDSSDESSSAEGFTYSTDDSDDSDTSDDDD
SNDGHRRSRSRKKNTSSWLMRKKGSPYRGLKVLPCTNPLYRKVLNYRYYR
LKVKSKKRPGRETAKMKDHTKRLMIGLSDLTFDGKTPILVIEFLIRFVAE
ADTLEMSEPQAFVSLPHFLNGFALEQYRSVRGSLTADEGGVTSWPEAVQY
LLRSYATSNAIRQAILDLRDVTQKPEEGEAEYSSRLTKALVRCGNVHSTE
DKITLYINGLDPSIKSLVARYREKHGRVSFLELVQFSKAEGDATRVRGCP
RRSVAFGISMGKEKICARVNQRSKLLYLEYLAHSRDSSLAPKGSDSHEQA
VHLKEYTDSSVLTVNLPHSESQDEEALMAMEDRRPMYRPYTVPP*
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spliced messenger RNA

>Gchil1420.t1 ID=Gchil1420.t1|Name=Gchil1420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00004414_pilon:886152..887936+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccgaagacccgaagccagtcgagttctgctcgccccggtcctgcgcg
accacccccaaaaccgaggctggcctcatctgttgaagccggagagcggc
tgtatcgtcaagcgatgtcgcgctcacgctcggtgaatgatgaacgagat
ctctcggatgtaccggcccctgtggtggcggcagccacgcccaccacaga
agccgtagttgacctcgaggtcgtcggacctcaagaagaggatgaattgc
gcagggaagtgcgttgtctcaagtctgagtcaagcgcttggagtgtgcgc
atggttgcgttggaatcgcagatcgctgctcttatcgctgatgtcgaaca
aatacgcagtgcgcatcaagcattccttcgtcaagacgatgggaagcagg
tctctgcatcagtgaaaacacttcgtgaggatttgaaccatctactggag
aggtacgggaatacgcctgatgcgctacccggcttaaccgtggatgtaga
ggaagtccttactcgagttaaccctcgtttagaacgcctggaggcggcag
ttcatgcgcagactgctgctaaaacagtcgtgctggaagaggaaggagct
cttttgaaggaagctcgttcgaagaagtcgaagtcacgacgtaagaagcg
gaagtccgcacgtgattcgagtgatgaatcgtcaagtgcggagggtttca
cttacagtactgatgattctgatgattcagatacgtcagatgacgacgac
agtaatgatggtcatcgaaggtcccgatctcggaagaagaacacgtcttc
gtggttaatgagaaaaaaaggctcaccttacaggggattgaaggtgctcc
cgtgcacgaatccgctttatcggaaggtcttgaattacaggtactaccgt
ctgaaggtgaagagcaagaagcgcccaggacgcgaaactgcgaagatgaa
ggatcacaccaaacgattgatgatcggccttagtgatttaacatttgatg
ggaagacccccattctcgttatcgagtttctcattcgattcgttgccgaa
gcagacacactagagatgagtgaaccacaggcatttgtgtctttaccaca
cttcctgaatggttttgctttagagcaatatcgttccgtacgcggatcat
tgacagccgatgaaggcggcgttacctcatggccagaggcggtgcagtat
ttgctgcgcagttacgcgacttcaaacgcgatacgtcaggcaatcctgga
cctaagggatgtgacccaaaagcctgaggagggcgaagctgagtacagct
caaggcttaccaaagctttagtccgctgtggaaacgtccactcgacggag
gacaagattaccttgtacatcaacgggctagacccgagcatcaagtcgtt
ggtagctcgatatcgagagaagcatggaagagtctcctttttggagttag
ttcagttttcgaaagctgaaggagacgcgaccagagtgcgtggttgcccc
cgtcgttcagtggcttttggaatctcaatgggtaaggagaagatctgcgc
cagagttaatcagcgcagcaaactgctatatctggaatatctagcgcact
cacgagattcgtcgttggcacccaaagggagtgactcgcatgagcaggcg
gtccatttaaaggaatatacggactcctctgtacttacagtgaatctccc
acactcggagtctcaggacgaggaagccctaatggctatggaggaccgcc
gccctatgtaccgtccctacacggtgcctccataa
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protein sequence of Gchil1420.t1

>Gchil1420.t1 ID=Gchil1420.t1|Name=Gchil1420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=595bp
MPKTRSQSSSARPGPARPPPKPRLASSVEAGERLYRQAMSRSRSVNDERD
LSDVPAPVVAAATPTTEAVVDLEVVGPQEEDELRREVRCLKSESSAWSVR
MVALESQIAALIADVEQIRSAHQAFLRQDDGKQVSASVKTLREDLNHLLE
RYGNTPDALPGLTVDVEEVLTRVNPRLERLEAAVHAQTAAKTVVLEEEGA
LLKEARSKKSKSRRKKRKSARDSSDESSSAEGFTYSTDDSDDSDTSDDDD
SNDGHRRSRSRKKNTSSWLMRKKGSPYRGLKVLPCTNPLYRKVLNYRYYR
LKVKSKKRPGRETAKMKDHTKRLMIGLSDLTFDGKTPILVIEFLIRFVAE
ADTLEMSEPQAFVSLPHFLNGFALEQYRSVRGSLTADEGGVTSWPEAVQY
LLRSYATSNAIRQAILDLRDVTQKPEEGEAEYSSRLTKALVRCGNVHSTE
DKITLYINGLDPSIKSLVARYREKHGRVSFLELVQFSKAEGDATRVRGCP
RRSVAFGISMGKEKICARVNQRSKLLYLEYLAHSRDSSLAPKGSDSHEQA
VHLKEYTDSSVLTVNLPHSESQDEEALMAMEDRRPMYRPYTVPP*
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mRNA from alignment at tig00004414_pilon:886152..887936+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1420.t1 ID=Gchil1420.t1|Name=Gchil1420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00004414_pilon:886152..887936+ (Gracilaria chilensis NLEC103_M9 male)
atgccgaagacccgaagccagtcgagttctgctcgccccggtcctgcgcg
accacccccaaaaccgaggctggcctcatctgttgaagccggagagcggc
tgtatcgtcaagcgatgtcgcgctcacgctcggtgaatgatgaacgagat
ctctcggatgtaccggcccctgtggtggcggcagccacgcccaccacaga
agccgtagttgacctcgaggtcgtcggacctcaagaagaggatgaattgc
gcagggaagtgcgttgtctcaagtctgagtcaagcgcttggagtgtgcgc
atggttgcgttggaatcgcagatcgctgctcttatcgctgatgtcgaaca
aatacgcagtgcgcatcaagcattccttcgtcaagacgatgggaagcagg
tctctgcatcagtgaaaacacttcgtgaggatttgaaccatctactggag
aggtacgggaatacgcctgatgcgctacccggcttaaccgtggatgtaga
ggaagtccttactcgagttaaccctcgtttagaacgcctggaggcggcag
ttcatgcgcagactgctgctaaaacagtcgtgctggaagaggaaggagct
cttttgaaggaagctcgttcgaagaagtcgaagtcacgacgtaagaagcg
gaagtccgcacgtgattcgagtgatgaatcgtcaagtgcggagggtttca
cttacagtactgatgattctgatgattcagatacgtcagatgacgacgac
agtaatgatggtcatcgaaggtcccgatctcggaagaagaacacgtcttc
gtggttaatgagaaaaaaaggctcaccttacaggggattgaaggtgctcc
cgtgcacgaatccgctttatcggaaggtcttgaattacaggtactaccgt
ctgaaggtgaagagcaagaagcgcccaggacgcgaaactgcgaagatgaa
ggatcacaccaaacgattgatgatcggccttagtgatttaacatttgatg
ggaagacccccattctcgttatcgagtttctcattcgattcgttgccgaa
gcagacacactagagatgagtgaaccacaggcatttgtgtctttaccaca
cttcctgaatggttttgctttagagcaatatcgttccgtacgcggatcat
tgacagccgatgaaggcggcgttacctcatggccagaggcggtgcagtat
ttgctgcgcagttacgcgacttcaaacgcgatacgtcaggcaatcctgga
cctaagggatgtgacccaaaagcctgaggagggcgaagctgagtacagct
caaggcttaccaaagctttagtccgctgtggaaacgtccactcgacggag
gacaagattaccttgtacatcaacgggctagacccgagcatcaagtcgtt
ggtagctcgatatcgagagaagcatggaagagtctcctttttggagttag
ttcagttttcgaaagctgaaggagacgcgaccagagtgcgtggttgcccc
cgtcgttcagtggcttttggaatctcaatgggtaaggagaagatctgcgc
cagagttaatcagcgcagcaaactgctatatctggaatatctagcgcact
cacgagattcgtcgttggcacccaaagggagtgactcgcatgagcaggcg
gtccatttaaaggaatatacggactcctctgtacttacagtgaatctccc
acactcggagtctcaggacgaggaagccctaatggctatggaggaccgcc
gccctatgtaccgtccctacacggtgcctccataa
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Coding sequence (CDS) from alignment at tig00004414_pilon:886152..887936+

>Gchil1420.t1 ID=Gchil1420.t1|Name=Gchil1420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1785bp|location=Sequence derived from alignment at tig00004414_pilon:886152..887936+ (Gracilaria chilensis NLEC103_M9 male)
atgccgaagacccgaagccagtcgagttctgctcgccccggtcctgcgcg
accacccccaaaaccgaggctggcctcatctgttgaagccggagagcggc
tgtatcgtcaagcgatgtcgcgctcacgctcggtgaatgatgaacgagat
ctctcggatgtaccggcccctgtggtggcggcagccacgcccaccacaga
agccgtagttgacctcgaggtcgtcggacctcaagaagaggatgaattgc
gcagggaagtgcgttgtctcaagtctgagtcaagcgcttggagtgtgcgc
atggttgcgttggaatcgcagatcgctgctcttatcgctgatgtcgaaca
aatacgcagtgcgcatcaagcattccttcgtcaagacgatgggaagcagg
tctctgcatcagtgaaaacacttcgtgaggatttgaaccatctactggag
aggtacgggaatacgcctgatgcgctacccggcttaaccgtggatgtaga
ggaagtccttactcgagttaaccctcgtttagaacgcctggaggcggcag
ttcatgcgcagactgctgctaaaacagtcgtgctggaagaggaaggagct
cttttgaaggaagctcgttcgaagaagtcgaagtcacgacgtaagaagcg
gaagtccgcacgtgattcgagtgatgaatcgtcaagtgcggagggtttca
cttacagtactgatgattctgatgattcagatacgtcagatgacgacgac
agtaatgatggtcatcgaaggtcccgatctcggaagaagaacacgtcttc
gtggttaatgagaaaaaaaggctcaccttacaggggattgaaggtgctcc
cgtgcacgaatccgctttatcggaaggtcttgaattacaggtactaccgt
ctgaaggtgaagagcaagaagcgcccaggacgcgaaactgcgaagatgaa
ggatcacaccaaacgattgatgatcggccttagtgatttaacatttgatg
ggaagacccccattctcgttatcgagtttctcattcgattcgttgccgaa
gcagacacactagagatgagtgaaccacaggcatttgtgtctttaccaca
cttcctgaatggttttgctttagagcaatatcgttccgtacgcggatcat
tgacagccgatgaaggcggcgttacctcatggccagaggcggtgcagtat
ttgctgcgcagttacgcgacttcaaacgcgatacgtcaggcaatcctgga
cctaagggatgtgacccaaaagcctgaggagggcgaagctgagtacagct
caaggcttaccaaagctttagtccgctgtggaaacgtccactcgacggag
gacaagattaccttgtacatcaacgggctagacccgagcatcaagtcgtt
ggtagctcgatatcgagagaagcatggaagagtctcctttttggagttag
ttcagttttcgaaagctgaaggagacgcgaccagagtgcgtggttgcccc
cgtcgttcagtggcttttggaatctcaatgggtaaggagaagatctgcgc
cagagttaatcagcgcagcaaactgctatatctggaatatctagcgcact
cacgagattcgtcgttggcacccaaagggagtgactcgcatgagcaggcg
gtccatttaaaggaatatacggactcctctgtacttacagtgaatctccc
acactcggagtctcaggacgaggaagccctaatggctatggaggaccgcc
gccctatgtaccgtccctacacggtgcctccataa
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