Gchil1419.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1419.t1
Unique NameGchil1419.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:883185..884884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6334.EFV50733
PFAMsAsp_protease_2,DUF1758,DUF1759,Peptidase_A17,RVT_1,rve
Max annot lvl33208|Metazoa
Evalue1.84e-54
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39TC6@33154|Opisthokonta,3BHT2@33208|Metazoa,3D2MB@33213|Bilateria
Descriptiontransposition, RNA-mediated
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1419Gchil1419Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 883185..884884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1Gchil1419.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 883185..884884 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1.start1Gchil1419.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 883185..883187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1.CDS1Gchil1419.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 883185..883765 +
Gchil1419.t1.CDS2Gchil1419.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 883860..884424 +
Gchil1419.t1.CDS3Gchil1419.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 884498..884884 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1.exon1Gchil1419.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 883185..883765 +
Gchil1419.t1.exon2Gchil1419.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 883860..884424 +
Gchil1419.t1.exon3Gchil1419.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 884498..884884 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1.intron1Gchil1419.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 883766..883859 +
Gchil1419.t1.intron2Gchil1419.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 884425..884497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1419.t1.stop1Gchil1419.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 884882..884884 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1419.t1 ID=Gchil1419.t1|Name=Gchil1419.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MNEAEQNYTVTEKECLAVVWSVLMLRPYLYGERFTLRTDHDALRWILGLA
DASGRLVRWRLRLSEFEHDVQYCPGIQHSISDALSRLNTSGLETKPVDDD
IPCFLVSSNQNGSSEHLEGCWDFPEEGALRNTDMATQILTLEETNVMPVT
REEFLREQVQDAYCRTLADQIGFKRITIRCGQRWVHREKVNLGWMYNTLR
QRFYWPHMAHDVHTFVGQCESCVRTRGGIRKHRKYLKLFPAAGPLEFVAI
DLLGPLPKTKNGYRHILVITDRFSKLTRAIPLKETKSTTLAIAFLNNWVY
PSGAPLYLLTDNGSNLESKFFEAVCNLFGIKHYFTTVYHPQTNGQVECFN
HTLVSRLRHYTEEHQTGWDELVQPLTYSYNLQGDHTTSTAAGALAPAQVK
RNILVSLRRGLKHAENRLTVAQKWYKGDYDRRVTKVVSVYSGQYVYIDNP
PSGKRPRPGDEADDEAIDRDINSKHLPKSVGPSKVLNASDHTVTVDQDGR
PLPKRCPRAR*
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spliced messenger RNA

>Gchil1419.t1 ID=Gchil1419.t1|Name=Gchil1419.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004414_pilon:883185..884884+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaatgaggcggagcagaactacacggtaaccgagaaagaatgtctagc
agtagtgtggagcgtgttgatgctccgtccatacctttatggtgagcgct
ttacgttgcgcacggaccacgacgccttaaggtggatcctcggactcgca
gatgcgtctggtagacttgtccgttggaggttgagattgtcggagtttga
acacgacgtacagtactgtccaggtatccagcacagcatatctgatgctt
tgtcacgcttaaacacctcagggttagagacaaaacctgtggacgatgat
atcccttgctttttggtgtcatcaaaccaaaatggtagcagcgaacacct
agaaggatgttgggacttccctgaagaaggtgccttgcgaaacaccgaca
tggccacgcagatactgaccctagaggaaacgaacgtcatgcccgtaacc
cgagaggaatttctacgagaacaggtccaggatgcgtactgcagaaccct
ggctgaccaaattggtttcaaaaggatcaccattcgatgtggacaacgat
gggtacatcgtgagaaggtcaaccttggatggatgtataacaccttgcgg
caacggttctattggcctcatatggcccatgatgtccatacctttgtagg
tcaatgtgaatcctgtgttcgtacccgcggtggtattcgaaagcatcgaa
agtacctcaagctgtttccagcagcgggtccgctggagtttgttgcgata
gaccttctaggaccacttcccaagaccaagaacgggtatcggcacattct
agtgatcaccgacaggttctcgaagctcacgagagcgatacctttaaagg
agacgaagtcaacaacgctggcgatcgcgttcctcaacaattgggtctac
ccgtctggtgcaccactatacctacttaccgataatggttcaaacctgga
atcgaaattcttcgaagcagtctgtaatctctttggtatcaagcactatt
tcactactgtttatcacccgcagacgaacggacaggtcgagtgctttaac
cacacattggtatcaaggctacgacactatacggaagagcaccaaactgg
atgggatgagctggtgcaaccgctcacctactcctataaccttcagggag
atcataccaccagcactgcagcgggcgcactggcccctgcccaggtcaag
cggaatatccttgtgagtttgaggaggggtctcaaacatgcagagaaccg
cctcactgtagcccagaagtggtataagggcgactacgaccgtagggtaa
ccaaagtggtctccgtttattcgggacaatatgtctacatagacaaccca
ccttcagggaaaagaccacgaccgggtgatgaagcggacgatgaagcgat
tgatagagatatcaattcgaagcatctacccaaatcagtgggaccttcta
aggtattgaacgcatcagaccacaccgtcacggttgaccaagatggaagg
ccactaccgaaaaggtgtccgcgagcgcgctag
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protein sequence of Gchil1419.t1

>Gchil1419.t1 ID=Gchil1419.t1|Name=Gchil1419.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MNEAEQNYTVTEKECLAVVWSVLMLRPYLYGERFTLRTDHDALRWILGLA
DASGRLVRWRLRLSEFEHDVQYCPGIQHSISDALSRLNTSGLETKPVDDD
IPCFLVSSNQNGSSEHLEGCWDFPEEGALRNTDMATQILTLEETNVMPVT
REEFLREQVQDAYCRTLADQIGFKRITIRCGQRWVHREKVNLGWMYNTLR
QRFYWPHMAHDVHTFVGQCESCVRTRGGIRKHRKYLKLFPAAGPLEFVAI
DLLGPLPKTKNGYRHILVITDRFSKLTRAIPLKETKSTTLAIAFLNNWVY
PSGAPLYLLTDNGSNLESKFFEAVCNLFGIKHYFTTVYHPQTNGQVECFN
HTLVSRLRHYTEEHQTGWDELVQPLTYSYNLQGDHTTSTAAGALAPAQVK
RNILVSLRRGLKHAENRLTVAQKWYKGDYDRRVTKVVSVYSGQYVYIDNP
PSGKRPRPGDEADDEAIDRDINSKHLPKSVGPSKVLNASDHTVTVDQDGR
PLPKRCPRAR*
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mRNA from alignment at tig00004414_pilon:883185..884884+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1419.t1 ID=Gchil1419.t1|Name=Gchil1419.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1700bp|location=Sequence derived from alignment at tig00004414_pilon:883185..884884+ (Gracilaria chilensis NLEC103_M9 male)
atgaatgaggcggagcagaactacacggtaaccgagaaagaatgtctagc
agtagtgtggagcgtgttgatgctccgtccatacctttatggtgagcgct
ttacgttgcgcacggaccacgacgccttaaggtggatcctcggactcgca
gatgcgtctggtagacttgtccgttggaggttgagattgtcggagtttga
acacgacgtacagtactgtccaggtatccagcacagcatatctgatgctt
tgtcacgcttaaacacctcagggttagagacaaaacctgtggacgatgat
atcccttgctttttggtgtcatcaaaccaaaatggtagcagcgaacacct
agaaggatgttgggacttccctgaagaaggtgccttgcgaaacaccgaca
tggccacgcagatactgaccctagaggaaacgaacgtcatgcccgtaacc
cgagaggaatttctacgagaacaggtccaggatgcgtactgcagaaccct
ggctgaccaaattggtttcaaaaggatcaccattcgatgtggacaacgat
gggtacatcgtgagaaggtcaaccttggatggtagccttcaaaaggtggt
tccgaatgcactgcgcccgagagccttgtatctcgcgcactacccgcgac
tatcgggacaccccggtgccaccaggatgtataacaccttgcggcaacgg
ttctattggcctcatatggcccatgatgtccatacctttgtaggtcaatg
tgaatcctgtgttcgtacccgcggtggtattcgaaagcatcgaaagtacc
tcaagctgtttccagcagcgggtccgctggagtttgttgcgatagacctt
ctaggaccacttcccaagaccaagaacgggtatcggcacattctagtgat
caccgacaggttctcgaagctcacgagagcgatacctttaaaggagacga
agtcaacaacgctggcgatcgcgttcctcaacaattgggtctacccgtct
ggtgcaccactatacctacttaccgataatggttcaaacctggaatcgaa
attcttcgaagcagtctgtaatctctttggtatcaagcactatttcacta
ctgtttatcacccgcagacgaacggacaggtcgagtgctttaaccacaca
ttggtatcaaggctacgacactatacggaagagcaccaaactggatggga
tgagctggtgcaaccgctcacctactcctataaccttcaggtacaccggt
caacgcagaacactccctttgatttggttctttcacgacccccccccagg
tattgtagtgcagggagatcataccaccagcactgcagcgggcgcactgg
cccctgcccaggtcaagcggaatatccttgtgagtttgaggaggggtctc
aaacatgcagagaaccgcctcactgtagcccagaagtggtataagggcga
ctacgaccgtagggtaaccaaagtggtctccgtttattcgggacaatatg
tctacatagacaacccaccttcagggaaaagaccacgaccgggtgatgaa
gcggacgatgaagcgattgatagagatatcaattcgaagcatctacccaa
atcagtgggaccttctaaggtattgaacgcatcagaccacaccgtcacgg
ttgaccaagatggaaggccactaccgaaaaggtgtccgcgagcgcgctag
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Coding sequence (CDS) from alignment at tig00004414_pilon:883185..884884+

>Gchil1419.t1 ID=Gchil1419.t1|Name=Gchil1419.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00004414_pilon:883185..884884+ (Gracilaria chilensis NLEC103_M9 male)
atgaatgaggcggagcagaactacacggtaaccgagaaagaatgtctagc
agtagtgtggagcgtgttgatgctccgtccatacctttatggtgagcgct
ttacgttgcgcacggaccacgacgccttaaggtggatcctcggactcgca
gatgcgtctggtagacttgtccgttggaggttgagattgtcggagtttga
acacgacgtacagtactgtccaggtatccagcacagcatatctgatgctt
tgtcacgcttaaacacctcagggttagagacaaaacctgtggacgatgat
atcccttgctttttggtgtcatcaaaccaaaatggtagcagcgaacacct
agaaggatgttgggacttccctgaagaaggtgccttgcgaaacaccgaca
tggccacgcagatactgaccctagaggaaacgaacgtcatgcccgtaacc
cgagaggaatttctacgagaacaggtccaggatgcgtactgcagaaccct
ggctgaccaaattggtttcaaaaggatcaccattcgatgtggacaacgat
gggtacatcgtgagaaggtcaaccttggatggatgtataacaccttgcgg
caacggttctattggcctcatatggcccatgatgtccatacctttgtagg
tcaatgtgaatcctgtgttcgtacccgcggtggtattcgaaagcatcgaa
agtacctcaagctgtttccagcagcgggtccgctggagtttgttgcgata
gaccttctaggaccacttcccaagaccaagaacgggtatcggcacattct
agtgatcaccgacaggttctcgaagctcacgagagcgatacctttaaagg
agacgaagtcaacaacgctggcgatcgcgttcctcaacaattgggtctac
ccgtctggtgcaccactatacctacttaccgataatggttcaaacctgga
atcgaaattcttcgaagcagtctgtaatctctttggtatcaagcactatt
tcactactgtttatcacccgcagacgaacggacaggtcgagtgctttaac
cacacattggtatcaaggctacgacactatacggaagagcaccaaactgg
atgggatgagctggtgcaaccgctcacctactcctataaccttcagggag
atcataccaccagcactgcagcgggcgcactggcccctgcccaggtcaag
cggaatatccttgtgagtttgaggaggggtctcaaacatgcagagaaccg
cctcactgtagcccagaagtggtataagggcgactacgaccgtagggtaa
ccaaagtggtctccgtttattcgggacaatatgtctacatagacaaccca
ccttcagggaaaagaccacgaccgggtgatgaagcggacgatgaagcgat
tgatagagatatcaattcgaagcatctacccaaatcagtgggaccttcta
aggtattgaacgcatcagaccacaccgtcacggttgaccaagatggaagg
ccactaccgaaaaggtgtccgcgagcgcgctag
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