Gchil1417.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1417.t1
Unique NameGchil1417.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:857011..857401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1417Gchil1417Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 857011..857401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1Gchil1417.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 857011..857401 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1.start1Gchil1417.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 857011..857013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1.CDS1Gchil1417.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 857011..857295 +
Gchil1417.t1.CDS2Gchil1417.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 857354..857401 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1.exon1Gchil1417.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 857011..857295 +
Gchil1417.t1.exon2Gchil1417.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 857354..857401 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1.intron1Gchil1417.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 857296..857353 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1417.t1.stop1Gchil1417.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 857399..857401 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1417.t1 ID=Gchil1417.t1|Name=Gchil1417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=111bp
MVLLQEIDAILRSALESDLRVLTLFGVLLSLLLSIWVRIIPLVLSATQPK
RLLQGLVFLKVYRPESVLCTLVRFTEKTHRKWVWAVVNFMANCCVISVEP
PFRRTFVSYL*
back to top

spliced messenger RNA

>Gchil1417.t1 ID=Gchil1417.t1|Name=Gchil1417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00004414_pilon:857011..857401+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTGCTGCAGGAAATTGATGCTATTCTCCGCTCCGCGCTCGAATC
CGATCTACGAGTGCTTACATTGTTTGGAGTTCTGTTATCGCTACTTCTAA
GTATATGGGTTCGAATTATTCCTCTAGTTCTCAGCGCCACACAGCCAAAA
CGTCTTCTACAGGGGTTAGTTTTTCTTAAAGTGTATCGCCCAGAGTCTGT
CCTTTGTACATTGGTGCGTTTTACAGAAAAGACACATCGGAAATGGGTGT
GGGCTGTTGTCAATTTCATGGCAAACTGTTGTGTGATTTCGGTGGAACCG
CCGTTTCGAAGGACGTTCGTTTCCTATTTATAA
back to top

protein sequence of Gchil1417.t1

>Gchil1417.t1 ID=Gchil1417.t1|Name=Gchil1417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=111bp
MVLLQEIDAILRSALESDLRVLTLFGVLLSLLLSIWVRIIPLVLSATQPK
RLLQGLVFLKVYRPESVLCTLVRFTEKTHRKWVWAVVNFMANCCVISVEP
PFRRTFVSYL*
back to top

mRNA from alignment at tig00004414_pilon:857011..857401+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1417.t1 ID=Gchil1417.t1|Name=Gchil1417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp|location=Sequence derived from alignment at tig00004414_pilon:857011..857401+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTGCTGCAGGAAATTGATGCTATTCTCCGCTCCGCGCTCGAATC
CGATCTACGAGTGCTTACATTGTTTGGAGTTCTGTTATCGCTACTTCTAA
GTATATGGGTTCGAATTATTCCTCTAGTTCTCAGCGCCACACAGCCAAAA
CGTCTTCTACAGGGGTTAGTTTTTCTTAAAGTGTATCGCCCAGAGTCTGT
CCTTTGTACATTGGTGCGTTTTACAGAAAAGACACATCGGAAATGGGTGT
GGGCTGTTGTCAATTTCATGGCAAACTGTTGTGTGGTACGTATTCTTTTT
CTATTCCCAGCAGATCAAATCACCTCTAACCTTCACTTTTTAGATTTCGG
TGGAACCGCCGTTTCGAAGGACGTTCGTTTCCTATTTATAA
back to top

Coding sequence (CDS) from alignment at tig00004414_pilon:857011..857401+

>Gchil1417.t1 ID=Gchil1417.t1|Name=Gchil1417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=333bp|location=Sequence derived from alignment at tig00004414_pilon:857011..857401+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTGCTGCAGGAAATTGATGCTATTCTCCGCTCCGCGCTCGAATC
CGATCTACGAGTGCTTACATTGTTTGGAGTTCTGTTATCGCTACTTCTAA
GTATATGGGTTCGAATTATTCCTCTAGTTCTCAGCGCCACACAGCCAAAA
CGTCTTCTACAGGGGTTAGTTTTTCTTAAAGTGTATCGCCCAGAGTCTGT
CCTTTGTACATTGGTGCGTTTTACAGAAAAGACACATCGGAAATGGGTGT
GGGCTGTTGTCAATTTCATGGCAAACTGTTGTGTGATTTCGGTGGAACCG
CCGTTTCGAAGGACGTTCGTTTCCTATTTATAA
back to top