Gchil1408.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1408.t1
Unique Name	Gchil1408.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:720643..721719 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706415.1
PFAMs	BING4CT,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14768
GOs	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	6.86e-70
EggNOG OGs	KOG1272@1\|root,KOG1272@2759\|Eukaryota
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1408	Gchil1408	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 720643..721719 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1408.t1.stop1	Gchil1408.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 720643..720645 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1408.t1.CDS1	Gchil1408.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 720643..721719 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1408.t1.exon1	Gchil1408.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 720643..721719 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1408.t1.start1	Gchil1408.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 721717..721719 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1408.t1	Gchil1408.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 720643..721719 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:720643..721719-
coding sequence from alignment at tig00004414_pilon:720643..721719-

mRNA sequence

>Gchil1408.t1 ID=Gchil1408.t1|Name=Gchil1408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MLLASTSAQAAPHGRLVYTDTSTGKVINEHDYAARHLRLNAATDTCANLS
NGIIHLAHTSGVVFLWSPVIRRPLVRMLTHRSAVHHVAVDLKGRYMYSTG
ADSVVACWDMSTYRKVFQWSVPPHTTSLCVSQRQMVALSFCASVHVWAPF
LTRPGLLLLEKRAEPYMRQTYSGSVITGLDFCPFEDVLAVCHETGVRNMI
VPGAGEPTFDTNAPNPYETRKQRSQNEVRSLIDKLPPASIVLDPSPVGSV
DRNPHERVREIRYQQRRANLEKIDKRGAKKKQKGRNKNSKRLKKVQETVV
QARKLEEGHMREKRQKTKDLIDKIRKKDLADVKAGINAGRLWATSPLPDA
LKRLMRKK*

spliced messenger RNA

>Gchil1408.t1 ID=Gchil1408.t1|Name=Gchil1408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004414_pilon:720643..721719- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGGCGTCTACTTCTGCTCAAGCTGCACCTCATGGCCGTCTCGT
ATACACCGATACCTCCACGGGTAAGGTCATCAACGAACATGATTACGCAG
CTCGTCACCTGCGACTCAATGCCGCCACAGACACTTGCGCCAATTTGTCA
AATGGTATCATTCACCTCGCGCACACCTCCGGAGTTGTTTTCCTTTGGTC
CCCTGTAATAAGACGCCCTCTAGTGCGCATGCTCACCCATCGCTCCGCTG
TGCATCACGTTGCAGTCGACCTTAAAGGCCGCTACATGTACTCTACAGGA
GCAGATTCAGTCGTTGCCTGCTGGGACATGAGCACGTACCGAAAGGTCTT
CCAGTGGTCCGTTCCACCTCATACCACTTCGCTTTGTGTGTCACAACGTC
AAATGGTTGCACTATCGTTTTGTGCATCCGTTCATGTCTGGGCCCCCTTC
CTCACTCGCCCTGGCCTGCTGCTTTTAGAGAAGCGCGCCGAACCGTACAT
GAGACAGACCTATTCCGGTTCAGTCATTACTGGTCTAGATTTTTGTCCAT
TCGAAGACGTTCTTGCTGTATGTCATGAGACAGGTGTTCGCAACATGATT
GTTCCCGGCGCCGGGGAGCCTACGTTCGATACCAACGCGCCCAATCCGTA
CGAAACCAGAAAACAACGTTCTCAAAACGAAGTGCGATCTCTCATCGACA
AATTGCCACCAGCGTCCATTGTGTTGGATCCATCGCCCGTGGGCTCCGTT
GACCGTAACCCTCACGAGCGTGTGCGCGAAATTCGGTACCAGCAGCGCCG
CGCGAACCTGGAGAAAATCGACAAGCGCGGTGCGAAGAAGAAACAGAAAG
GACGAAACAAGAATTCGAAGCGTCTAAAGAAAGTGCAAGAAACTGTTGTG
CAAGCTAGAAAGCTTGAGGAGGGGCACATGCGCGAGAAACGACAGAAGAC
AAAAGACTTGATTGATAAGATTCGGAAGAAGGACTTGGCCGATGTAAAAG
CTGGAATTAATGCTGGGCGGCTTTGGGCGACTTCTCCTTTGCCGGATGCT
CTAAAGCGCTTAATGAGAAAGAAGTAA

protein sequence of Gchil1408.t1

>Gchil1408.t1 ID=Gchil1408.t1|Name=Gchil1408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MLLASTSAQAAPHGRLVYTDTSTGKVINEHDYAARHLRLNAATDTCANLS
NGIIHLAHTSGVVFLWSPVIRRPLVRMLTHRSAVHHVAVDLKGRYMYSTG
ADSVVACWDMSTYRKVFQWSVPPHTTSLCVSQRQMVALSFCASVHVWAPF
LTRPGLLLLEKRAEPYMRQTYSGSVITGLDFCPFEDVLAVCHETGVRNMI
VPGAGEPTFDTNAPNPYETRKQRSQNEVRSLIDKLPPASIVLDPSPVGSV
DRNPHERVREIRYQQRRANLEKIDKRGAKKKQKGRNKNSKRLKKVQETVV
QARKLEEGHMREKRQKTKDLIDKIRKKDLADVKAGINAGRLWATSPLPDA
LKRLMRKK*

mRNA from alignment at tig00004414_pilon:720643..721719-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1408.t1 ID=Gchil1408.t1|Name=Gchil1408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004414_pilon:720643..721719- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTGGCGTCTACTTCTGCTCAAGCTGCACCTCATGGCCGTCTCGT
ATACACCGATACCTCCACGGGTAAGGTCATCAACGAACATGATTACGCAG
CTCGTCACCTGCGACTCAATGCCGCCACAGACACTTGCGCCAATTTGTCA
AATGGTATCATTCACCTCGCGCACACCTCCGGAGTTGTTTTCCTTTGGTC
CCCTGTAATAAGACGCCCTCTAGTGCGCATGCTCACCCATCGCTCCGCTG
TGCATCACGTTGCAGTCGACCTTAAAGGCCGCTACATGTACTCTACAGGA
GCAGATTCAGTCGTTGCCTGCTGGGACATGAGCACGTACCGAAAGGTCTT
CCAGTGGTCCGTTCCACCTCATACCACTTCGCTTTGTGTGTCACAACGTC
AAATGGTTGCACTATCGTTTTGTGCATCCGTTCATGTCTGGGCCCCCTTC
CTCACTCGCCCTGGCCTGCTGCTTTTAGAGAAGCGCGCCGAACCGTACAT
GAGACAGACCTATTCCGGTTCAGTCATTACTGGTCTAGATTTTTGTCCAT
TCGAAGACGTTCTTGCTGTATGTCATGAGACAGGTGTTCGCAACATGATT
GTTCCCGGCGCCGGGGAGCCTACGTTCGATACCAACGCGCCCAATCCGTA
CGAAACCAGAAAACAACGTTCTCAAAACGAAGTGCGATCTCTCATCGACA
AATTGCCACCAGCGTCCATTGTGTTGGATCCATCGCCCGTGGGCTCCGTT
GACCGTAACCCTCACGAGCGTGTGCGCGAAATTCGGTACCAGCAGCGCCG
CGCGAACCTGGAGAAAATCGACAAGCGCGGTGCGAAGAAGAAACAGAAAG
GACGAAACAAGAATTCGAAGCGTCTAAAGAAAGTGCAAGAAACTGTTGTG
CAAGCTAGAAAGCTTGAGGAGGGGCACATGCGCGAGAAACGACAGAAGAC
AAAAGACTTGATTGATAAGATTCGGAAGAAGGACTTGGCCGATGTAAAAG
CTGGAATTAATGCTGGGCGGCTTTGGGCGACTTCTCCTTTGCCGGATGCT
CTAAAGCGCTTAATGAGAAAGAAGTAA

Coding sequence (CDS) from alignment at tig00004414_pilon:720643..721719-

>Gchil1408.t1 ID=Gchil1408.t1|Name=Gchil1408.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00004414_pilon:720643..721719- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTGGCGTCTACTTCTGCTCAAGCTGCACCTCATGGCCGTCTCGT
ATACACCGATACCTCCACGGGTAAGGTCATCAACGAACATGATTACGCAG
CTCGTCACCTGCGACTCAATGCCGCCACAGACACTTGCGCCAATTTGTCA
AATGGTATCATTCACCTCGCGCACACCTCCGGAGTTGTTTTCCTTTGGTC
CCCTGTAATAAGACGCCCTCTAGTGCGCATGCTCACCCATCGCTCCGCTG
TGCATCACGTTGCAGTCGACCTTAAAGGCCGCTACATGTACTCTACAGGA
GCAGATTCAGTCGTTGCCTGCTGGGACATGAGCACGTACCGAAAGGTCTT
CCAGTGGTCCGTTCCACCTCATACCACTTCGCTTTGTGTGTCACAACGTC
AAATGGTTGCACTATCGTTTTGTGCATCCGTTCATGTCTGGGCCCCCTTC
CTCACTCGCCCTGGCCTGCTGCTTTTAGAGAAGCGCGCCGAACCGTACAT
GAGACAGACCTATTCCGGTTCAGTCATTACTGGTCTAGATTTTTGTCCAT
TCGAAGACGTTCTTGCTGTATGTCATGAGACAGGTGTTCGCAACATGATT
GTTCCCGGCGCCGGGGAGCCTACGTTCGATACCAACGCGCCCAATCCGTA
CGAAACCAGAAAACAACGTTCTCAAAACGAAGTGCGATCTCTCATCGACA
AATTGCCACCAGCGTCCATTGTGTTGGATCCATCGCCCGTGGGCTCCGTT
GACCGTAACCCTCACGAGCGTGTGCGCGAAATTCGGTACCAGCAGCGCCG
CGCGAACCTGGAGAAAATCGACAAGCGCGGTGCGAAGAAGAAACAGAAAG
GACGAAACAAGAATTCGAAGCGTCTAAAGAAAGTGCAAGAAACTGTTGTG
CAAGCTAGAAAGCTTGAGGAGGGGCACATGCGCGAGAAACGACAGAAGAC
AAAAGACTTGATTGATAAGATTCGGAAGAAGGACTTGGCCGATGTAAAAG
CTGGAATTAATGCTGGGCGGCTTTGGGCGACTTCTCCTTTGCCGGATGCT
CTAAAGCGCTTAATGAGAAAGAAGTAA