Gchil1406.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1406.t1
Unique NameGchil1406.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:666007..667377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1137271.AZUM01000001_gene821
PFAMsDUF4226
Max annot lvl201174|Actinobacteria
Evalue1.35e-13
EggNOG OGs2DNAQ@1|root,32WH2@2|Bacteria,2H0GR@201174|Actinobacteria,4E3A7@85010|Pseudonocardiales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1406Gchil1406Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 666007..667377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1406.t1.stop1Gchil1406.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 666007..666009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1406.t1.CDS1Gchil1406.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 666007..667377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1406.t1.exon1Gchil1406.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 666007..667377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1406.t1.start1Gchil1406.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 667375..667377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1406.t1Gchil1406.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 666007..667377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1406.t1 ID=Gchil1406.t1|Name=Gchil1406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=457bp
MTPTFFFSTICTIFFVLNITATALPVNYRNKLSQAAIPTTDFDGVTKLPQ
VVRYGYEGSGDCGNESTEDREWINSEYEDLDFDPDGPGLKTTGVFNMGEI
GTVSNIRDESFRVTEEQYPEGPGRNNEKDAFRHTYFNARLTQELGAENAK
DWSDAYEISNPNQIEERIMDLNNNRAGRQIGEDNGDASPAETAQAVKDAI
DNGDGNIMTSPPNCGGDADGEGDPHLKGFDGSSFDFHGEAGKNYILFGDG
SGDLLVSKMRNAPAKKQKDLFPRTYFDAFGLQFGRKDNCQRGSKVSVSLD
LEEGSANNWTQVVRLNGKRITSNYKNGPIQISMKQQMHFVTVTTSSNVYT
FHAHLHQQWRHQDVTLTLKGSPGAAVHFRGMLGWTLNRKLGYRFPVDLFQ
LKGDHKEMSLRRHFEVPSLFPISQGDCYRNNLGQWVESTGLPNMTGRNLL
RATAKN*
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spliced messenger RNA

>Gchil1406.t1 ID=Gchil1406.t1|Name=Gchil1406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00004414_pilon:666007..667377- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCAACATTCTTTTTTTCCACTATCTGTACCATTTTCTTTGTTCT
GAATATAACCGCGACGGCCCTTCCAGTGAATTATAGGAATAAGCTGTCCC
AAGCGGCCATCCCTACTACTGATTTTGATGGTGTGACGAAGCTCCCTCAA
GTGGTTCGATATGGATACGAAGGGTCTGGTGATTGCGGAAATGAGTCTAC
CGAGGATCGTGAATGGATTAACAGTGAATATGAAGATTTGGACTTCGATC
CCGATGGCCCCGGGCTAAAGACGACAGGGGTATTCAACATGGGCGAAATA
GGAACCGTGAGCAATATCAGAGACGAGTCTTTTAGAGTGACAGAGGAGCA
ATATCCAGAGGGTCCAGGTCGCAATAACGAGAAGGACGCTTTTCGTCACA
CCTACTTCAATGCACGCCTTACTCAGGAATTGGGCGCGGAAAATGCAAAG
GACTGGAGTGATGCATATGAGATTTCCAATCCAAACCAAATCGAAGAACG
CATAATGGACTTGAACAATAACCGCGCCGGTAGACAAATAGGCGAGGATA
ATGGCGACGCTAGTCCTGCAGAAACAGCACAAGCCGTCAAAGATGCCATT
GACAATGGGGATGGAAACATCATGACAAGCCCACCCAACTGCGGGGGAGA
TGCAGACGGGGAAGGCGATCCTCATCTCAAAGGGTTCGATGGATCCAGTT
TTGATTTTCATGGGGAAGCAGGCAAAAACTACATCTTGTTCGGGGATGGT
TCTGGTGATTTGCTTGTCAGCAAGATGCGAAATGCACCTGCGAAGAAGCA
AAAGGATCTCTTTCCACGTACCTACTTTGATGCATTTGGATTGCAGTTCG
GAAGAAAAGACAATTGTCAAAGAGGCAGTAAAGTGTCGGTATCTCTGGAC
TTGGAGGAGGGGTCGGCAAACAATTGGACTCAGGTCGTGCGGCTGAATGG
GAAGCGTATTACTTCAAATTACAAGAACGGACCGATTCAGATTAGCATGA
AGCAACAGATGCACTTCGTAACCGTAACAACGAGTTCAAATGTATATACC
TTCCACGCTCATCTTCATCAGCAATGGCGCCATCAAGATGTTACTCTTAC
GTTGAAGGGTTCTCCAGGCGCGGCTGTGCATTTCCGGGGAATGCTGGGAT
GGACACTGAATCGAAAACTCGGATATCGTTTTCCTGTAGATTTGTTTCAG
TTGAAGGGCGATCATAAGGAGATGAGTCTACGTCGTCATTTCGAGGTTCC
TTCTCTCTTCCCCATCTCGCAAGGCGACTGCTATCGCAATAACCTGGGAC
AATGGGTAGAGAGCACCGGCCTTCCGAATATGACAGGGCGAAATCTTCTT
CGTGCTACAGCCAAGAATTGA
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protein sequence of Gchil1406.t1

>Gchil1406.t1 ID=Gchil1406.t1|Name=Gchil1406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=457bp
MTPTFFFSTICTIFFVLNITATALPVNYRNKLSQAAIPTTDFDGVTKLPQ
VVRYGYEGSGDCGNESTEDREWINSEYEDLDFDPDGPGLKTTGVFNMGEI
GTVSNIRDESFRVTEEQYPEGPGRNNEKDAFRHTYFNARLTQELGAENAK
DWSDAYEISNPNQIEERIMDLNNNRAGRQIGEDNGDASPAETAQAVKDAI
DNGDGNIMTSPPNCGGDADGEGDPHLKGFDGSSFDFHGEAGKNYILFGDG
SGDLLVSKMRNAPAKKQKDLFPRTYFDAFGLQFGRKDNCQRGSKVSVSLD
LEEGSANNWTQVVRLNGKRITSNYKNGPIQISMKQQMHFVTVTTSSNVYT
FHAHLHQQWRHQDVTLTLKGSPGAAVHFRGMLGWTLNRKLGYRFPVDLFQ
LKGDHKEMSLRRHFEVPSLFPISQGDCYRNNLGQWVESTGLPNMTGRNLL
RATAKN*
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mRNA from alignment at tig00004414_pilon:666007..667377-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1406.t1 ID=Gchil1406.t1|Name=Gchil1406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00004414_pilon:666007..667377- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCCAACATTCTTTTTTTCCACTATCTGTACCATTTTCTTTGTTCT
GAATATAACCGCGACGGCCCTTCCAGTGAATTATAGGAATAAGCTGTCCC
AAGCGGCCATCCCTACTACTGATTTTGATGGTGTGACGAAGCTCCCTCAA
GTGGTTCGATATGGATACGAAGGGTCTGGTGATTGCGGAAATGAGTCTAC
CGAGGATCGTGAATGGATTAACAGTGAATATGAAGATTTGGACTTCGATC
CCGATGGCCCCGGGCTAAAGACGACAGGGGTATTCAACATGGGCGAAATA
GGAACCGTGAGCAATATCAGAGACGAGTCTTTTAGAGTGACAGAGGAGCA
ATATCCAGAGGGTCCAGGTCGCAATAACGAGAAGGACGCTTTTCGTCACA
CCTACTTCAATGCACGCCTTACTCAGGAATTGGGCGCGGAAAATGCAAAG
GACTGGAGTGATGCATATGAGATTTCCAATCCAAACCAAATCGAAGAACG
CATAATGGACTTGAACAATAACCGCGCCGGTAGACAAATAGGCGAGGATA
ATGGCGACGCTAGTCCTGCAGAAACAGCACAAGCCGTCAAAGATGCCATT
GACAATGGGGATGGAAACATCATGACAAGCCCACCCAACTGCGGGGGAGA
TGCAGACGGGGAAGGCGATCCTCATCTCAAAGGGTTCGATGGATCCAGTT
TTGATTTTCATGGGGAAGCAGGCAAAAACTACATCTTGTTCGGGGATGGT
TCTGGTGATTTGCTTGTCAGCAAGATGCGAAATGCACCTGCGAAGAAGCA
AAAGGATCTCTTTCCACGTACCTACTTTGATGCATTTGGATTGCAGTTCG
GAAGAAAAGACAATTGTCAAAGAGGCAGTAAAGTGTCGGTATCTCTGGAC
TTGGAGGAGGGGTCGGCAAACAATTGGACTCAGGTCGTGCGGCTGAATGG
GAAGCGTATTACTTCAAATTACAAGAACGGACCGATTCAGATTAGCATGA
AGCAACAGATGCACTTCGTAACCGTAACAACGAGTTCAAATGTATATACC
TTCCACGCTCATCTTCATCAGCAATGGCGCCATCAAGATGTTACTCTTAC
GTTGAAGGGTTCTCCAGGCGCGGCTGTGCATTTCCGGGGAATGCTGGGAT
GGACACTGAATCGAAAACTCGGATATCGTTTTCCTGTAGATTTGTTTCAG
TTGAAGGGCGATCATAAGGAGATGAGTCTACGTCGTCATTTCGAGGTTCC
TTCTCTCTTCCCCATCTCGCAAGGCGACTGCTATCGCAATAACCTGGGAC
AATGGGTAGAGAGCACCGGCCTTCCGAATATGACAGGGCGAAATCTTCTT
CGTGCTACAGCCAAGAATTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:666007..667377-

>Gchil1406.t1 ID=Gchil1406.t1|Name=Gchil1406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00004414_pilon:666007..667377- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCCAACATTCTTTTTTTCCACTATCTGTACCATTTTCTTTGTTCT
GAATATAACCGCGACGGCCCTTCCAGTGAATTATAGGAATAAGCTGTCCC
AAGCGGCCATCCCTACTACTGATTTTGATGGTGTGACGAAGCTCCCTCAA
GTGGTTCGATATGGATACGAAGGGTCTGGTGATTGCGGAAATGAGTCTAC
CGAGGATCGTGAATGGATTAACAGTGAATATGAAGATTTGGACTTCGATC
CCGATGGCCCCGGGCTAAAGACGACAGGGGTATTCAACATGGGCGAAATA
GGAACCGTGAGCAATATCAGAGACGAGTCTTTTAGAGTGACAGAGGAGCA
ATATCCAGAGGGTCCAGGTCGCAATAACGAGAAGGACGCTTTTCGTCACA
CCTACTTCAATGCACGCCTTACTCAGGAATTGGGCGCGGAAAATGCAAAG
GACTGGAGTGATGCATATGAGATTTCCAATCCAAACCAAATCGAAGAACG
CATAATGGACTTGAACAATAACCGCGCCGGTAGACAAATAGGCGAGGATA
ATGGCGACGCTAGTCCTGCAGAAACAGCACAAGCCGTCAAAGATGCCATT
GACAATGGGGATGGAAACATCATGACAAGCCCACCCAACTGCGGGGGAGA
TGCAGACGGGGAAGGCGATCCTCATCTCAAAGGGTTCGATGGATCCAGTT
TTGATTTTCATGGGGAAGCAGGCAAAAACTACATCTTGTTCGGGGATGGT
TCTGGTGATTTGCTTGTCAGCAAGATGCGAAATGCACCTGCGAAGAAGCA
AAAGGATCTCTTTCCACGTACCTACTTTGATGCATTTGGATTGCAGTTCG
GAAGAAAAGACAATTGTCAAAGAGGCAGTAAAGTGTCGGTATCTCTGGAC
TTGGAGGAGGGGTCGGCAAACAATTGGACTCAGGTCGTGCGGCTGAATGG
GAAGCGTATTACTTCAAATTACAAGAACGGACCGATTCAGATTAGCATGA
AGCAACAGATGCACTTCGTAACCGTAACAACGAGTTCAAATGTATATACC
TTCCACGCTCATCTTCATCAGCAATGGCGCCATCAAGATGTTACTCTTAC
GTTGAAGGGTTCTCCAGGCGCGGCTGTGCATTTCCGGGGAATGCTGGGAT
GGACACTGAATCGAAAACTCGGATATCGTTTTCCTGTAGATTTGTTTCAG
TTGAAGGGCGATCATAAGGAGATGAGTCTACGTCGTCATTTCGAGGTTCC
TTCTCTCTTCCCCATCTCGCAAGGCGACTGCTATCGCAATAACCTGGGAC
AATGGGTAGAGAGCACCGGCCTTCCGAATATGACAGGGCGAAATCTTCTT
CGTGCTACAGCCAAGAATTGA
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