Gchil1404.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1404.t1
Unique NameGchil1404.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:653434..654057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1404Gchil1404Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 653434..654057 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1404.t1.stop1Gchil1404.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 653434..653436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1404.t1.CDS1Gchil1404.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 653434..654057 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1404.t1.exon1Gchil1404.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 653434..654057 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1404.t1.start1Gchil1404.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 654055..654057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1404.t1Gchil1404.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 653434..654057 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1404.t1 ID=Gchil1404.t1|Name=Gchil1404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=208bp
MNNNFLLCLVVLLTLQRGLGGHTPLTANQGVTYSKCEVRGDAGLCRFGFK
DLWGVFDHVQWGSGNYSLKGTHSGAFTPKIIHKDPDFYDAEVGYIKVDDS
LRDVYTCETEFDNEDLTFSNTKCRYLTIPGWLFSTAKLPGERGSGVSRSH
EWALRRYVPNGACILMYVTEYEVVDTSVSPPRVREVRRMSARQARVENNC
VLFYAQF*
back to top

spliced messenger RNA

>Gchil1404.t1 ID=Gchil1404.t1|Name=Gchil1404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004414_pilon:653434..654057- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACAATTTCTTACTCTGTCTCGTCGTGCTTCTTACCCTTCAAAG
AGGGCTTGGCGGTCACACGCCATTGACAGCGAATCAAGGCGTAACCTATT
CCAAATGCGAGGTGAGAGGCGATGCAGGTCTTTGTCGATTCGGTTTCAAG
GACTTGTGGGGTGTCTTTGATCACGTCCAATGGGGTTCAGGAAACTATTC
GTTGAAAGGCACACATTCCGGCGCATTCACACCAAAGATTATTCACAAAG
ACCCCGATTTCTACGATGCTGAAGTGGGATATATCAAGGTGGACGATTCA
TTGAGAGATGTGTATACATGTGAAACAGAATTTGACAATGAGGATCTCAC
ATTTTCGAACACAAAATGTCGATACTTGACTATACCCGGATGGTTGTTCA
GCACTGCTAAATTACCGGGTGAGAGAGGGTCAGGAGTGTCTAGATCGCAT
GAATGGGCTCTGAGAAGATATGTTCCGAATGGGGCTTGTATACTGATGTA
CGTGACTGAATATGAAGTGGTGGATACTTCCGTTTCTCCGCCGAGGGTGC
GAGAGGTGCGAAGAATGTCTGCCCGACAAGCTCGCGTGGAGAACAATTGC
GTTCTCTTCTATGCCCAGTTTTAA
back to top

protein sequence of Gchil1404.t1

>Gchil1404.t1 ID=Gchil1404.t1|Name=Gchil1404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=208bp
MNNNFLLCLVVLLTLQRGLGGHTPLTANQGVTYSKCEVRGDAGLCRFGFK
DLWGVFDHVQWGSGNYSLKGTHSGAFTPKIIHKDPDFYDAEVGYIKVDDS
LRDVYTCETEFDNEDLTFSNTKCRYLTIPGWLFSTAKLPGERGSGVSRSH
EWALRRYVPNGACILMYVTEYEVVDTSVSPPRVREVRRMSARQARVENNC
VLFYAQF*
back to top

mRNA from alignment at tig00004414_pilon:653434..654057-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1404.t1 ID=Gchil1404.t1|Name=Gchil1404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00004414_pilon:653434..654057- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACAATTTCTTACTCTGTCTCGTCGTGCTTCTTACCCTTCAAAG
AGGGCTTGGCGGTCACACGCCATTGACAGCGAATCAAGGCGTAACCTATT
CCAAATGCGAGGTGAGAGGCGATGCAGGTCTTTGTCGATTCGGTTTCAAG
GACTTGTGGGGTGTCTTTGATCACGTCCAATGGGGTTCAGGAAACTATTC
GTTGAAAGGCACACATTCCGGCGCATTCACACCAAAGATTATTCACAAAG
ACCCCGATTTCTACGATGCTGAAGTGGGATATATCAAGGTGGACGATTCA
TTGAGAGATGTGTATACATGTGAAACAGAATTTGACAATGAGGATCTCAC
ATTTTCGAACACAAAATGTCGATACTTGACTATACCCGGATGGTTGTTCA
GCACTGCTAAATTACCGGGTGAGAGAGGGTCAGGAGTGTCTAGATCGCAT
GAATGGGCTCTGAGAAGATATGTTCCGAATGGGGCTTGTATACTGATGTA
CGTGACTGAATATGAAGTGGTGGATACTTCCGTTTCTCCGCCGAGGGTGC
GAGAGGTGCGAAGAATGTCTGCCCGACAAGCTCGCGTGGAGAACAATTGC
GTTCTCTTCTATGCCCAGTTTTAA
back to top

Coding sequence (CDS) from alignment at tig00004414_pilon:653434..654057-

>Gchil1404.t1 ID=Gchil1404.t1|Name=Gchil1404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00004414_pilon:653434..654057- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACAATTTCTTACTCTGTCTCGTCGTGCTTCTTACCCTTCAAAG
AGGGCTTGGCGGTCACACGCCATTGACAGCGAATCAAGGCGTAACCTATT
CCAAATGCGAGGTGAGAGGCGATGCAGGTCTTTGTCGATTCGGTTTCAAG
GACTTGTGGGGTGTCTTTGATCACGTCCAATGGGGTTCAGGAAACTATTC
GTTGAAAGGCACACATTCCGGCGCATTCACACCAAAGATTATTCACAAAG
ACCCCGATTTCTACGATGCTGAAGTGGGATATATCAAGGTGGACGATTCA
TTGAGAGATGTGTATACATGTGAAACAGAATTTGACAATGAGGATCTCAC
ATTTTCGAACACAAAATGTCGATACTTGACTATACCCGGATGGTTGTTCA
GCACTGCTAAATTACCGGGTGAGAGAGGGTCAGGAGTGTCTAGATCGCAT
GAATGGGCTCTGAGAAGATATGTTCCGAATGGGGCTTGTATACTGATGTA
CGTGACTGAATATGAAGTGGTGGATACTTCCGTTTCTCCGCCGAGGGTGC
GAGAGGTGCGAAGAATGTCTGCCCGACAAGCTCGCGTGGAGAACAATTGC
GTTCTCTTCTATGCCCAGTTTTAA
back to top