Gchil1403.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1403.t1
Unique Name	Gchil1403.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:650411..652447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313172.YM304_00980
PFAMs	Beta_propel
Max annot lvl	201174\|Actinobacteria
Evalue	4.43e-116
EggNOG OGs	COG1948@1\|root,COG4880@2\|Bacteria,2I8JU@201174\|Actinobacteria
Description	Beta propeller domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1403	Gchil1403	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 650411..652447 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1403.t1.start1	Gchil1403.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 650411..650413 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1403.t1.CDS1	Gchil1403.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 650411..652447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1403.t1.exon1	Gchil1403.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 650411..652447 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1403.t1.stop1	Gchil1403.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 652445..652447 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1403.t1	Gchil1403.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 650411..652447 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:650411..652447+
coding sequence from alignment at tig00004414_pilon:650411..652447+

mRNA sequence

>Gchil1403.t1 ID=Gchil1403.t1|Name=Gchil1403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=679bp
MKPINFRYTAVLGVLLLVLYTRNTYAISLNPYNTCTDLVSYFKNNALSRV
GPYGLADSRNFGSRVPSFCLPSNEDGRSPIFVQFGFGSSDTIGPSSFLPA
GSIGGNGGLGGVAAPQTSNSEPVSNQVAGVDFSETNVQVDGVDEPDIIKT
DGRTVFVIRGTKLFVLQVEFGGTKGRVTGQLTLPSRPREMLVQGDHLLVI
AQTSGTINLISVFGYNGGNFNGQSTTTVYQIKVMSGVPKLVSTLRMEGRY
LNSREVDGVARILLLYKPFLRFKYPSCNEPFSEAETHNQGIIRGSTEKDW
YPSYFLKVEGQDKEVTDLISSCSNVYVPGLFSGFELLTVVTLPVSGYLKP
TGSVSIVSAGDEVYSTASSLYVTTTEYRWDFFGLENSLGSGREFKTSIHK
FSLNKFGANYVASGEVSGSVLNQFSMHDLNGYFFIATTDGAPWWGSRDES
SSKVTSFKTDAPSKSLSQVGQVGNLGRGERIFAVRYVKGTAYVVTFRQVD
PLYIIDLSQPWLLRVTGELKIPGFSSYLHPISPGLILGVGQDAISEGRTT
GAKVSLFDVSDKTTPKELSSWTLPESSTPAQWDHRAFLYWAPESTAVLPV
SIYYYSKRFIGSVVLEISDGTIKERGRIEHEAKTTTAYTTSIKRNLVLGG
RSLWSLSSQQIQVNDIKDLSKISVTTLT*

spliced messenger RNA

>Gchil1403.t1 ID=Gchil1403.t1|Name=Gchil1403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00004414_pilon:650411..652447+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCATCAATTTCCGCTACACTGCCGTTTTAGGCGTATTGCTTCT
TGTCCTCTACACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACGGATCTCGTCAGCTACTTCAAAAACAACGCTCTCTCGCGTGTG
GGACCCTACGGTTTAGCAGATTCAAGGAACTTTGGATCGCGTGTACCGTC
TTTCTGCCTACCTTCCAACGAAGATGGACGTTCGCCGATATTTGTTCAAT
TTGGGTTTGGTTCGTCTGATACAATTGGGCCCTCCTCTTTCCTCCCCGCA
GGTTCCATTGGTGGTAATGGAGGCCTTGGCGGCGTCGCTGCTCCTCAAAC
AAGCAATTCTGAACCTGTGAGCAACCAGGTTGCAGGCGTGGATTTCTCAG
AGACAAATGTGCAAGTGGACGGTGTTGATGAACCAGACATTATAAAAACA
GATGGAAGAACGGTGTTTGTGATTCGTGGAACCAAGCTCTTCGTTCTTCA
AGTTGAGTTTGGAGGCACAAAAGGAAGAGTGACTGGACAGCTTACTTTGC
CGTCACGTCCTAGAGAAATGCTTGTTCAAGGTGATCATCTGCTCGTTATT
GCGCAAACGTCCGGTACCATCAACTTGATTTCCGTCTTTGGCTACAATGG
TGGAAACTTCAATGGCCAAAGCACTACGACTGTTTACCAGATCAAAGTGA
TGAGTGGAGTTCCGAAATTGGTCTCCACCCTTCGAATGGAGGGGCGGTAC
TTGAATTCAAGGGAAGTTGACGGCGTGGCCCGGATTTTGTTGCTTTACAA
GCCTTTTCTGCGCTTCAAGTATCCTTCGTGTAATGAGCCTTTTTCTGAAG
CGGAAACACACAATCAAGGCATTATTCGAGGGAGCACCGAAAAGGATTGG
TATCCCAGCTATTTTTTAAAAGTGGAAGGACAGGACAAAGAAGTCACTGA
TTTGATTTCATCTTGCTCGAATGTTTATGTCCCAGGGCTCTTCTCAGGAT
TTGAATTGCTCACAGTTGTCACTCTACCCGTTTCAGGATATCTCAAGCCA
ACAGGAAGCGTTTCGATCGTATCCGCTGGCGATGAAGTGTATTCGACAGC
CTCGTCGTTGTATGTCACGACAACCGAATATCGATGGGACTTCTTCGGCT
TGGAGAATAGTCTGGGGTCTGGACGAGAATTCAAGACATCCATACATAAG
TTTTCTTTGAACAAGTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTC
AGGCAGCGTGCTAAACCAATTCTCGATGCACGATCTTAATGGGTATTTCT
TCATTGCCACCACTGATGGAGCACCCTGGTGGGGCTCTCGAGATGAGAGC
TCAAGCAAGGTGACTTCATTCAAGACTGATGCTCCTTCCAAGAGCTTATC
TCAAGTTGGACAAGTTGGTAACTTGGGAAGAGGAGAACGAATTTTTGCTG
TTCGATACGTGAAGGGCACGGCATATGTTGTAACGTTTAGGCAAGTTGAT
CCTTTGTATATCATTGATTTGTCTCAGCCGTGGTTGCTGAGAGTAACAGG
CGAATTGAAAATTCCAGGATTCAGTTCTTATCTTCATCCGATCTCACCTG
GACTTATTTTGGGCGTTGGACAGGATGCCATCTCTGAGGGTAGAACTACA
GGGGCGAAGGTGTCATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGA
ACTCTCTTCATGGACTTTGCCAGAAAGTAGCACTCCTGCGCAGTGGGATC
ATCGTGCTTTCCTGTACTGGGCGCCAGAATCTACCGCAGTTCTCCCTGTA
TCCATCTACTATTATTCGAAGAGGTTCATTGGTTCTGTTGTTCTGGAAAT
CTCGGATGGTACAATCAAGGAACGTGGTCGGATCGAGCACGAAGCAAAGA
CTACGACAGCATACACTACTTCTATTAAAAGGAATCTTGTTCTTGGTGGC
AGGAGCTTGTGGTCCTTATCGTCTCAACAGATTCAAGTGAATGATATCAA
AGATCTATCAAAAATATCAGTTACGACTTTGACCTGA

protein sequence of Gchil1403.t1

>Gchil1403.t1 ID=Gchil1403.t1|Name=Gchil1403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=679bp
MKPINFRYTAVLGVLLLVLYTRNTYAISLNPYNTCTDLVSYFKNNALSRV
GPYGLADSRNFGSRVPSFCLPSNEDGRSPIFVQFGFGSSDTIGPSSFLPA
GSIGGNGGLGGVAAPQTSNSEPVSNQVAGVDFSETNVQVDGVDEPDIIKT
DGRTVFVIRGTKLFVLQVEFGGTKGRVTGQLTLPSRPREMLVQGDHLLVI
AQTSGTINLISVFGYNGGNFNGQSTTTVYQIKVMSGVPKLVSTLRMEGRY
LNSREVDGVARILLLYKPFLRFKYPSCNEPFSEAETHNQGIIRGSTEKDW
YPSYFLKVEGQDKEVTDLISSCSNVYVPGLFSGFELLTVVTLPVSGYLKP
TGSVSIVSAGDEVYSTASSLYVTTTEYRWDFFGLENSLGSGREFKTSIHK
FSLNKFGANYVASGEVSGSVLNQFSMHDLNGYFFIATTDGAPWWGSRDES
SSKVTSFKTDAPSKSLSQVGQVGNLGRGERIFAVRYVKGTAYVVTFRQVD
PLYIIDLSQPWLLRVTGELKIPGFSSYLHPISPGLILGVGQDAISEGRTT
GAKVSLFDVSDKTTPKELSSWTLPESSTPAQWDHRAFLYWAPESTAVLPV
SIYYYSKRFIGSVVLEISDGTIKERGRIEHEAKTTTAYTTSIKRNLVLGG
RSLWSLSSQQIQVNDIKDLSKISVTTLT*

mRNA from alignment at tig00004414_pilon:650411..652447+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1403.t1 ID=Gchil1403.t1|Name=Gchil1403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00004414_pilon:650411..652447+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCATCAATTTCCGCTACACTGCCGTTTTAGGCGTATTGCTTCT
TGTCCTCTACACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACGGATCTCGTCAGCTACTTCAAAAACAACGCTCTCTCGCGTGTG
GGACCCTACGGTTTAGCAGATTCAAGGAACTTTGGATCGCGTGTACCGTC
TTTCTGCCTACCTTCCAACGAAGATGGACGTTCGCCGATATTTGTTCAAT
TTGGGTTTGGTTCGTCTGATACAATTGGGCCCTCCTCTTTCCTCCCCGCA
GGTTCCATTGGTGGTAATGGAGGCCTTGGCGGCGTCGCTGCTCCTCAAAC
AAGCAATTCTGAACCTGTGAGCAACCAGGTTGCAGGCGTGGATTTCTCAG
AGACAAATGTGCAAGTGGACGGTGTTGATGAACCAGACATTATAAAAACA
GATGGAAGAACGGTGTTTGTGATTCGTGGAACCAAGCTCTTCGTTCTTCA
AGTTGAGTTTGGAGGCACAAAAGGAAGAGTGACTGGACAGCTTACTTTGC
CGTCACGTCCTAGAGAAATGCTTGTTCAAGGTGATCATCTGCTCGTTATT
GCGCAAACGTCCGGTACCATCAACTTGATTTCCGTCTTTGGCTACAATGG
TGGAAACTTCAATGGCCAAAGCACTACGACTGTTTACCAGATCAAAGTGA
TGAGTGGAGTTCCGAAATTGGTCTCCACCCTTCGAATGGAGGGGCGGTAC
TTGAATTCAAGGGAAGTTGACGGCGTGGCCCGGATTTTGTTGCTTTACAA
GCCTTTTCTGCGCTTCAAGTATCCTTCGTGTAATGAGCCTTTTTCTGAAG
CGGAAACACACAATCAAGGCATTATTCGAGGGAGCACCGAAAAGGATTGG
TATCCCAGCTATTTTTTAAAAGTGGAAGGACAGGACAAAGAAGTCACTGA
TTTGATTTCATCTTGCTCGAATGTTTATGTCCCAGGGCTCTTCTCAGGAT
TTGAATTGCTCACAGTTGTCACTCTACCCGTTTCAGGATATCTCAAGCCA
ACAGGAAGCGTTTCGATCGTATCCGCTGGCGATGAAGTGTATTCGACAGC
CTCGTCGTTGTATGTCACGACAACCGAATATCGATGGGACTTCTTCGGCT
TGGAGAATAGTCTGGGGTCTGGACGAGAATTCAAGACATCCATACATAAG
TTTTCTTTGAACAAGTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTC
AGGCAGCGTGCTAAACCAATTCTCGATGCACGATCTTAATGGGTATTTCT
TCATTGCCACCACTGATGGAGCACCCTGGTGGGGCTCTCGAGATGAGAGC
TCAAGCAAGGTGACTTCATTCAAGACTGATGCTCCTTCCAAGAGCTTATC
TCAAGTTGGACAAGTTGGTAACTTGGGAAGAGGAGAACGAATTTTTGCTG
TTCGATACGTGAAGGGCACGGCATATGTTGTAACGTTTAGGCAAGTTGAT
CCTTTGTATATCATTGATTTGTCTCAGCCGTGGTTGCTGAGAGTAACAGG
CGAATTGAAAATTCCAGGATTCAGTTCTTATCTTCATCCGATCTCACCTG
GACTTATTTTGGGCGTTGGACAGGATGCCATCTCTGAGGGTAGAACTACA
GGGGCGAAGGTGTCATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGA
ACTCTCTTCATGGACTTTGCCAGAAAGTAGCACTCCTGCGCAGTGGGATC
ATCGTGCTTTCCTGTACTGGGCGCCAGAATCTACCGCAGTTCTCCCTGTA
TCCATCTACTATTATTCGAAGAGGTTCATTGGTTCTGTTGTTCTGGAAAT
CTCGGATGGTACAATCAAGGAACGTGGTCGGATCGAGCACGAAGCAAAGA
CTACGACAGCATACACTACTTCTATTAAAAGGAATCTTGTTCTTGGTGGC
AGGAGCTTGTGGTCCTTATCGTCTCAACAGATTCAAGTGAATGATATCAA
AGATCTATCAAAAATATCAGTTACGACTTTGACCTGA

Coding sequence (CDS) from alignment at tig00004414_pilon:650411..652447+

>Gchil1403.t1 ID=Gchil1403.t1|Name=Gchil1403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00004414_pilon:650411..652447+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCATCAATTTCCGCTACACTGCCGTTTTAGGCGTATTGCTTCT
TGTCCTCTACACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACGGATCTCGTCAGCTACTTCAAAAACAACGCTCTCTCGCGTGTG
GGACCCTACGGTTTAGCAGATTCAAGGAACTTTGGATCGCGTGTACCGTC
TTTCTGCCTACCTTCCAACGAAGATGGACGTTCGCCGATATTTGTTCAAT
TTGGGTTTGGTTCGTCTGATACAATTGGGCCCTCCTCTTTCCTCCCCGCA
GGTTCCATTGGTGGTAATGGAGGCCTTGGCGGCGTCGCTGCTCCTCAAAC
AAGCAATTCTGAACCTGTGAGCAACCAGGTTGCAGGCGTGGATTTCTCAG
AGACAAATGTGCAAGTGGACGGTGTTGATGAACCAGACATTATAAAAACA
GATGGAAGAACGGTGTTTGTGATTCGTGGAACCAAGCTCTTCGTTCTTCA
AGTTGAGTTTGGAGGCACAAAAGGAAGAGTGACTGGACAGCTTACTTTGC
CGTCACGTCCTAGAGAAATGCTTGTTCAAGGTGATCATCTGCTCGTTATT
GCGCAAACGTCCGGTACCATCAACTTGATTTCCGTCTTTGGCTACAATGG
TGGAAACTTCAATGGCCAAAGCACTACGACTGTTTACCAGATCAAAGTGA
TGAGTGGAGTTCCGAAATTGGTCTCCACCCTTCGAATGGAGGGGCGGTAC
TTGAATTCAAGGGAAGTTGACGGCGTGGCCCGGATTTTGTTGCTTTACAA
GCCTTTTCTGCGCTTCAAGTATCCTTCGTGTAATGAGCCTTTTTCTGAAG
CGGAAACACACAATCAAGGCATTATTCGAGGGAGCACCGAAAAGGATTGG
TATCCCAGCTATTTTTTAAAAGTGGAAGGACAGGACAAAGAAGTCACTGA
TTTGATTTCATCTTGCTCGAATGTTTATGTCCCAGGGCTCTTCTCAGGAT
TTGAATTGCTCACAGTTGTCACTCTACCCGTTTCAGGATATCTCAAGCCA
ACAGGAAGCGTTTCGATCGTATCCGCTGGCGATGAAGTGTATTCGACAGC
CTCGTCGTTGTATGTCACGACAACCGAATATCGATGGGACTTCTTCGGCT
TGGAGAATAGTCTGGGGTCTGGACGAGAATTCAAGACATCCATACATAAG
TTTTCTTTGAACAAGTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTC
AGGCAGCGTGCTAAACCAATTCTCGATGCACGATCTTAATGGGTATTTCT
TCATTGCCACCACTGATGGAGCACCCTGGTGGGGCTCTCGAGATGAGAGC
TCAAGCAAGGTGACTTCATTCAAGACTGATGCTCCTTCCAAGAGCTTATC
TCAAGTTGGACAAGTTGGTAACTTGGGAAGAGGAGAACGAATTTTTGCTG
TTCGATACGTGAAGGGCACGGCATATGTTGTAACGTTTAGGCAAGTTGAT
CCTTTGTATATCATTGATTTGTCTCAGCCGTGGTTGCTGAGAGTAACAGG
CGAATTGAAAATTCCAGGATTCAGTTCTTATCTTCATCCGATCTCACCTG
GACTTATTTTGGGCGTTGGACAGGATGCCATCTCTGAGGGTAGAACTACA
GGGGCGAAGGTGTCATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGA
ACTCTCTTCATGGACTTTGCCAGAAAGTAGCACTCCTGCGCAGTGGGATC
ATCGTGCTTTCCTGTACTGGGCGCCAGAATCTACCGCAGTTCTCCCTGTA
TCCATCTACTATTATTCGAAGAGGTTCATTGGTTCTGTTGTTCTGGAAAT
CTCGGATGGTACAATCAAGGAACGTGGTCGGATCGAGCACGAAGCAAAGA
CTACGACAGCATACACTACTTCTATTAAAAGGAATCTTGTTCTTGGTGGC
AGGAGCTTGTGGTCCTTATCGTCTCAACAGATTCAAGTGAATGATATCAA
AGATCTATCAAAAATATCAGTTACGACTTTGACCTGA