Gchil1400.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1400.t1
Unique NameGchil1400.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length78
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:564145..564378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1400Gchil1400Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 564145..564378 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1400.t1.stop1Gchil1400.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 564145..564147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1400.t1.CDS1Gchil1400.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 564145..564378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1400.t1.exon1Gchil1400.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 564145..564378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1400.t1.start1Gchil1400.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 564376..564378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1400.t1Gchil1400.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 564145..564378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1400.t1 ID=Gchil1400.t1|Name=Gchil1400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=78bp
MTASLAQVTCGAEDEKGPRDLSRCQDLLAEVVALLVVAGEYEAIKSVPFV
SSVIYFKGYSNAEYFPYDAIGNVSGGW*
back to top

spliced messenger RNA

>Gchil1400.t1 ID=Gchil1400.t1|Name=Gchil1400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp|location=Sequence derived from alignment at tig00004414_pilon:564145..564378- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGTCTCTTGCTCAGGTCACCTGTGGCGCTGAAGATGAAAAAGG
TCCTCGAGATCTCTCTAGGTGCCAGGATCTGCTTGCCGAAGTCGTGGCGC
TTCTTGTCGTTGCCGGTGAATACGAGGCCATTAAATCTGTACCGTTCGTT
TCCTCAGTTATTTATTTTAAGGGCTACTCCAATGCAGAATATTTTCCTTA
CGATGCCATAGGTAACGTCTCTGGAGGATGGTGA
back to top

protein sequence of Gchil1400.t1

>Gchil1400.t1 ID=Gchil1400.t1|Name=Gchil1400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=78bp
MTASLAQVTCGAEDEKGPRDLSRCQDLLAEVVALLVVAGEYEAIKSVPFV
SSVIYFKGYSNAEYFPYDAIGNVSGGW*
back to top

mRNA from alignment at tig00004414_pilon:564145..564378-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1400.t1 ID=Gchil1400.t1|Name=Gchil1400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp|location=Sequence derived from alignment at tig00004414_pilon:564145..564378- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTCTCTTGCTCAGGTCACCTGTGGCGCTGAAGATGAAAAAGG
TCCTCGAGATCTCTCTAGGTGCCAGGATCTGCTTGCCGAAGTCGTGGCGC
TTCTTGTCGTTGCCGGTGAATACGAGGCCATTAAATCTGTACCGTTCGTT
TCCTCAGTTATTTATTTTAAGGGCTACTCCAATGCAGAATATTTTCCTTA
CGATGCCATAGGTAACGTCTCTGGAGGATGGTGA
back to top

Coding sequence (CDS) from alignment at tig00004414_pilon:564145..564378-

>Gchil1400.t1 ID=Gchil1400.t1|Name=Gchil1400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=234bp|location=Sequence derived from alignment at tig00004414_pilon:564145..564378- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTCTCTTGCTCAGGTCACCTGTGGCGCTGAAGATGAAAAAGG
TCCTCGAGATCTCTCTAGGTGCCAGGATCTGCTTGCCGAAGTCGTGGCGC
TTCTTGTCGTTGCCGGTGAATACGAGGCCATTAAATCTGTACCGTTCGTT
TCCTCAGTTATTTATTTTAAGGGCTACTCCAATGCAGAATATTTTCCTTA
CGATGCCATAGGTAACGTCTCTGGAGGATGGTGA
back to top