Gchil1398.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1398.t2
Unique NameGchil1398.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:481487..482761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1398Gchil1398Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 481483..482761 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2.stop1Gchil1398.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 481487..481489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2.CDS1Gchil1398.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 481487..481496 -
Gchil1398.t2.CDS2Gchil1398.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 481586..481619 -
Gchil1398.t2.CDS3Gchil1398.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 481703..481754 -
Gchil1398.t2.CDS4Gchil1398.t2.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 481830..481858 -
Gchil1398.t2.CDS5Gchil1398.t2.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 481934..481998 -
Gchil1398.t2.CDS6Gchil1398.t2.CDS6Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 482751..482761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2.exon1Gchil1398.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 481487..481496 -
Gchil1398.t2.exon2Gchil1398.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 481586..481619 -
Gchil1398.t2.exon3Gchil1398.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 481703..481754 -
Gchil1398.t2.exon4Gchil1398.t2.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 481830..481858 -
Gchil1398.t2.exon5Gchil1398.t2.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 481934..481998 -
Gchil1398.t2.exon6Gchil1398.t2.exon6Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 482751..482761 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2.intron1Gchil1398.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 481497..481585 -
Gchil1398.t2.intron2Gchil1398.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 481620..481702 -
Gchil1398.t2.intron3Gchil1398.t2.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 481755..481829 -
Gchil1398.t2.intron4Gchil1398.t2.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 481859..481933 -
Gchil1398.t2.intron5Gchil1398.t2.intron5Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 481999..482750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2.start1Gchil1398.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 482759..482761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1398.t2Gchil1398.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 481487..482761 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1398.t2 ID=Gchil1398.t2|Name=Gchil1398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=67bp
MQNLKERLGEEGDILEGLGRARILGVVDREMVASKRTGRQDWTRGRVSGR
YRVGARQGAHIWERNL*
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spliced messenger RNA

>Gchil1398.t2 ID=Gchil1398.t2|Name=Gchil1398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp|location=Sequence derived from alignment at tig00004414_pilon:481487..482761- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAATCTAAAGGAGCGATTAGGTGAAGAGGGGGACATTCTGGAAGG
ACTGGGCCGAGCAAGGATCTTAGGAGTGGTTGATCGGGAAATGGTGGCAT
CAAAGAGAACAGGGAGGCAAGATTGGACAAGAGGTAGGGTAAGTGGTCGC
TATAGAGTGGGAGCAAGACAAGGAGCACATATTTGGGAGAGGAATTTGTG
A
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protein sequence of Gchil1398.t2

>Gchil1398.t2 ID=Gchil1398.t2|Name=Gchil1398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=67bp
MQNLKERLGEEGDILEGLGRARILGVVDREMVASKRTGRQDWTRGRVSGR
YRVGARQGAHIWERNL*
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mRNA from alignment at tig00004414_pilon:481487..482761-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1398.t2 ID=Gchil1398.t2|Name=Gchil1398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00004414_pilon:481487..482761- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAATCTGTTTTCATCCAGATTCGTCCCCTTTACGCCCATGCCCGC
AATGTCGCGTCACCGCCTTTCATCACTGTCTCCGCTCGTGGCTTCGCGTC
AAAATCAAGAACGGTGATTTCAATCATCTCTCCTGTTTTCTGTTCCATGA
GCTCATCCCCGACGCAGAAGTGAGAAATATCGTGGGAGAGCTCGAATTCA
AAAGGTGTCTTTTCTTTTGCTCCGATATTCAGCATGGAAGCAACCCTACC
GCAGCATGGTGTCCAAAGGTGGGATGTTGGAAACTGTTGCGGTGCAATGT
GCGTAAACTATGCGTCAATACCGCGAACATGACCTGCCCGGATTGCGACA
CGCAGGTGTGCCCTCGATGCTTCAGCGAAGGTCATGGAGATGACATGTGT
CCAGTACCTACCGTCGCCGTCCGAGAAAAGACACTCTCCCGTATCTGGGA
GAGGGTTCACACCAAAAAGTGTCCAATATCTCGAATATCTCTAGTAACAC
TGTGAAGAACGATCGCTCTAGAATGTATCCAATGCGCAAATTGAAATCCC
AGGAAACAGAGACTTTAGTTTCCACAGGGGATGAGGAATCCGGTTTATAT
CAGAGAATAGCAGAAACAACTGCGGGGGAAACAGGGCCTCTTCGAAAACG
GGCAAAGTGCATGATTCCAAGAGCCATAGTTCCTCCAGCATTCGAAAGTC
CTCGCAGGCTTGTCGAAGAATCACCAATCAGACATGTTATTTTTTGCTGC
TGCGAAGCGACAGAAAGGAGCGATTAGGTGAAGAGGGGGACATTCTGGAA
GGACTGGGCCGAGCAAGGATCTTAGGAGGTGAGTGCGTCATTTAAGTAAT
GTGGTTTCGATTTTGGTGGAAGTCTGACTTCTATTTCTTTCTTGTTACGA
CAGTGGTTGATCGGGAAATGGTGGCATCAAAGGTAAGTGCGAGCTTCATT
CATATCTTGTATGCGTTAGGGAAGGATATCTGACTTGCCGTTGTTTGCTG
CTGCAAGAGAACAGGGAGGCAAGATTGGACAAGAGGTAGGGTAAGTGGTC
GCTATAGAGGTGAGTGTGGTGCTGATGTGGTTTGGGTTTTATTTGTGACG
GAGATCTGACTTTGGTCTATTTATTGATGCGAATGCACAAAGTGGGAGCA
AGACAAGGAGCACATATTTGGGAGAGGTAAGTTTGTTTATATGGAATTTG
CTTGCATGAAGCGAGGAATTGGGCTCTAACTTGTGTGAGTTTGTGATGTC
TATCTAGTAACATAGGAATTTGTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:481487..482761-

>Gchil1398.t2 ID=Gchil1398.t2|Name=Gchil1398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=201bp|location=Sequence derived from alignment at tig00004414_pilon:481487..482761- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAATCTAAAGGAGCGATTAGGTGAAGAGGGGGACATTCTGGAAGG
ACTGGGCCGAGCAAGGATCTTAGGAGTGGTTGATCGGGAAATGGTGGCAT
CAAAGAGAACAGGGAGGCAAGATTGGACAAGAGGTAGGGTAAGTGGTCGC
TATAGAGTGGGAGCAAGACAAGGAGCACATATTTGGGAGAGGAATTTGTG
A
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