Gchil1396.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1396.t1
Unique NameGchil1396.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:454497..455009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1396Gchil1396Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 454497..455009 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1396.t1.start1Gchil1396.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 454497..454499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1396.t1.CDS1Gchil1396.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 454497..455009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1396.t1.exon1Gchil1396.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 454497..455009 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1396.t1.stop1Gchil1396.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 455007..455009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1396.t1Gchil1396.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 454497..455009 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1396.t1 ID=Gchil1396.t1|Name=Gchil1396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=171bp
MAIITEEFERLRREQGVLARRDERDPMPAVVRTLPEDLNQVMERHGNAPE
ALPGLNVDLEEILTRVNPRLERLEAVANAQTTATQVVQDKNVFSLREERS
RKSNSRRRKKRKSQPDTSDDSSGSKDEDSSADDSDSSNTSTENASDDDHR
GPGSRKKNKSSWLLRKKDPK*
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spliced messenger RNA

>Gchil1396.t1 ID=Gchil1396.t1|Name=Gchil1396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004414_pilon:454497..455009+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgatcataaccgaagaattcgagcgcttgcgccgagaacaaggcgt
actcgctcgtcgagatgaaagggacccgatgcccgcagttgtgagaaccc
tgccagaagatttgaaccaggtaatggaaaggcatggtaatgctccggag
gctttaccgggcctgaacgttgacctggaggaaatcctcactcgagttaa
ccctcgtctggaacgcctggaagcagtggcaaatgcgcagactactgcta
cccaagtcgtgcaagacaaaaatgtattctccttgagggaagagcgatcg
aggaaatcgaattcaagacgtcgcaagaagagaaagtcccagccggacac
tagtgatgattcatcaggatcgaaggatgaggactccagtgctgacgatt
ctgactcctcaaatacatccactgagaatgccagtgatgatgatcatcgt
ggtcctggttcgaggaaaaagaacaagtcttcttggctactaaggaagaa
ggatcctaagtag
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protein sequence of Gchil1396.t1

>Gchil1396.t1 ID=Gchil1396.t1|Name=Gchil1396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=171bp
MAIITEEFERLRREQGVLARRDERDPMPAVVRTLPEDLNQVMERHGNAPE
ALPGLNVDLEEILTRVNPRLERLEAVANAQTTATQVVQDKNVFSLREERS
RKSNSRRRKKRKSQPDTSDDSSGSKDEDSSADDSDSSNTSTENASDDDHR
GPGSRKKNKSSWLLRKKDPK*
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mRNA from alignment at tig00004414_pilon:454497..455009+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1396.t1 ID=Gchil1396.t1|Name=Gchil1396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004414_pilon:454497..455009+ (Gracilaria chilensis NLEC103_M9 male)
atggcgatcataaccgaagaattcgagcgcttgcgccgagaacaaggcgt
actcgctcgtcgagatgaaagggacccgatgcccgcagttgtgagaaccc
tgccagaagatttgaaccaggtaatggaaaggcatggtaatgctccggag
gctttaccgggcctgaacgttgacctggaggaaatcctcactcgagttaa
ccctcgtctggaacgcctggaagcagtggcaaatgcgcagactactgcta
cccaagtcgtgcaagacaaaaatgtattctccttgagggaagagcgatcg
aggaaatcgaattcaagacgtcgcaagaagagaaagtcccagccggacac
tagtgatgattcatcaggatcgaaggatgaggactccagtgctgacgatt
ctgactcctcaaatacatccactgagaatgccagtgatgatgatcatcgt
ggtcctggttcgaggaaaaagaacaagtcttcttggctactaaggaagaa
ggatcctaagtag
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Coding sequence (CDS) from alignment at tig00004414_pilon:454497..455009+

>Gchil1396.t1 ID=Gchil1396.t1|Name=Gchil1396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00004414_pilon:454497..455009+ (Gracilaria chilensis NLEC103_M9 male)
atggcgatcataaccgaagaattcgagcgcttgcgccgagaacaaggcgt
actcgctcgtcgagatgaaagggacccgatgcccgcagttgtgagaaccc
tgccagaagatttgaaccaggtaatggaaaggcatggtaatgctccggag
gctttaccgggcctgaacgttgacctggaggaaatcctcactcgagttaa
ccctcgtctggaacgcctggaagcagtggcaaatgcgcagactactgcta
cccaagtcgtgcaagacaaaaatgtattctccttgagggaagagcgatcg
aggaaatcgaattcaagacgtcgcaagaagagaaagtcccagccggacac
tagtgatgattcatcaggatcgaaggatgaggactccagtgctgacgatt
ctgactcctcaaatacatccactgagaatgccagtgatgatgatcatcgt
ggtcctggttcgaggaaaaagaacaagtcttcttggctactaaggaagaa
ggatcctaagtag
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