Gchil1392.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1392.t1
Unique Name	Gchil1392.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:379160..381124 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1392	Gchil1392	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 379160..381124 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1392.t1.start1	Gchil1392.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 379160..379162 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1392.t1.CDS1	Gchil1392.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 379160..381124 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1392.t1.exon1	Gchil1392.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 379160..381124 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1392.t1.stop1	Gchil1392.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 381122..381124 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1392.t1	Gchil1392.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 379160..381124 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:379160..381124+
coding sequence from alignment at tig00004414_pilon:379160..381124+

mRNA sequence

>Gchil1392.t1 ID=Gchil1392.t1|Name=Gchil1392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=655bp
MTSELSPPKDTSDKLDNLSSTTGALIEAFDKILVLPYVDVLRLDALGDLS
IADVVLDLKQKYQELQGNTLPFARDLYSYAGLQLQTIPTISVSLDLATYL
NLNKVIIARHKIEALNVKKESETFRKTFVATLDVFENTIKELGEQIQNLT
TQIQDTKDLQEKERAVAVVGGVFTFMFTVAAVLAIVTTAGAVGAAGASTS
ASVASTTAVQGSAVASSGFFTALGASIGAASGTSGLVGVSAAISTAALGA
LAETIISSIEAGNYERAVTSLESLKTSAENARYQLLEVVEHMKVIEDSLD
DIVTVWTDVELSLSIIQSDVDSWSKENFSEELVAPTVEEWQEVRTAVAKY
TSVVSGDRSLRSDENSDVQLSADRIVSLAGSIAVSELKSNLQAPDIEFNA
KLSDLKKMREALHYTLSLPEVGNSLKSQTESAIRYLDETERGLGQLSGEL
SEFAKERLLWLDAFETSDGSQRVEMITGNKSVYQAFEEKITRAQDTEQKA
FSFQSAVGLVNNTLMRIIGEKTAEQTALKRQLKSIEAKRRKKKWLWVVPV
AGAVNEILDAANNIRGKIRKIRRDVQLISRSCQQIRMLSSTVSSSVKDST
LVVQTYSSILNDVRASADDAVLFTVLGSEIPADLFISIKDSWVELATDIH
EFIV*

spliced messenger RNA

>Gchil1392.t1 ID=Gchil1392.t1|Name=Gchil1392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00004414_pilon:379160..381124+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAGAGCTTTCCCCCCCGAAAGACACCTCCGACAAGCTCGATAA
TCTCTCTAGCACAACAGGTGCCCTCATTGAAGCATTCGACAAAATCCTTG
TTCTCCCGTACGTGGATGTCCTTCGACTCGATGCGCTCGGTGACTTGTCG
ATCGCAGATGTCGTTCTCGACCTGAAGCAGAAGTATCAGGAATTACAGGG
AAATACCTTACCCTTCGCTCGAGACCTGTACAGCTATGCCGGCCTTCAGC
TGCAAACCATTCCAACTATCAGTGTCTCGCTCGACTTGGCCACGTATCTA
AACCTCAACAAGGTCATCATTGCCCGTCATAAAATTGAGGCTTTGAACGT
AAAAAAGGAAAGTGAAACCTTTCGGAAAACATTCGTCGCCACCCTTGACG
TGTTTGAAAACACGATTAAAGAGCTCGGAGAGCAAATTCAGAACCTTACA
ACGCAGATTCAGGACACTAAGGACCTGCAGGAGAAGGAGCGCGCCGTTGC
AGTTGTGGGTGGGGTCTTCACCTTTATGTTCACTGTAGCCGCTGTCTTGG
CAATTGTCACCACAGCGGGGGCTGTGGGGGCGGCAGGTGCCTCCACTTCC
GCCTCTGTTGCATCCACCACAGCGGTCCAGGGGAGTGCGGTTGCATCATC
AGGTTTCTTTACCGCGTTGGGGGCTTCTATTGGCGCTGCCTCAGGAACCT
CAGGTCTAGTCGGGGTCTCTGCAGCCATTTCTACAGCTGCACTTGGTGCA
CTAGCAGAAACCATCATCTCCTCGATAGAGGCTGGTAATTATGAAAGAGC
TGTCACTAGTCTAGAGTCGCTCAAGACGAGTGCCGAGAACGCCCGATACC
AATTGCTTGAGGTTGTCGAACACATGAAAGTTATTGAGGACTCGCTGGAC
GATATCGTGACAGTATGGACAGATGTTGAATTGTCTCTCAGTATCATTCA
AAGCGATGTAGACAGTTGGAGTAAAGAAAACTTTTCGGAGGAACTCGTGG
CACCAACTGTCGAAGAATGGCAAGAAGTAAGGACCGCAGTTGCGAAGTAC
ACTTCAGTTGTGTCCGGAGACAGAAGCTTGAGATCTGACGAGAATTCAGA
TGTACAATTATCAGCCGACCGAATAGTTTCTCTGGCCGGGAGCATAGCAG
TTTCTGAGTTGAAGTCAAATCTCCAGGCACCAGATATTGAATTCAACGCC
AAGTTGTCTGATCTCAAGAAGATGCGAGAAGCGCTTCATTACACTTTGTC
GCTTCCAGAGGTGGGTAATTCACTGAAATCTCAAACTGAATCCGCCATAC
GATATCTTGATGAAACCGAAAGAGGCCTTGGGCAATTATCGGGTGAACTG
TCAGAATTTGCAAAAGAACGACTGCTTTGGCTTGACGCCTTTGAAACCTC
AGACGGATCACAGAGGGTGGAAATGATCACAGGTAATAAATCTGTGTATC
AGGCATTTGAAGAAAAAATTACTCGTGCACAAGACACCGAACAAAAGGCT
TTTTCATTTCAGTCCGCAGTTGGGCTCGTGAATAACACTCTCATGCGCAT
TATCGGCGAAAAAACTGCGGAGCAGACTGCGCTCAAAAGGCAGCTGAAGA
GTATCGAAGCCAAGAGAAGGAAGAAGAAGTGGTTATGGGTTGTCCCTGTC
GCGGGGGCCGTCAATGAAATTTTGGATGCGGCAAACAACATTCGTGGGAA
AATCAGGAAAATTCGCCGCGATGTTCAGCTAATCTCTCGAAGTTGTCAGC
AGATTCGCATGCTCAGCAGTACTGTCTCTTCTTCTGTGAAGGACAGTACT
CTTGTTGTGCAGACATACAGTTCAATTCTGAATGACGTTCGCGCAAGTGC
TGATGACGCCGTCCTTTTCACGGTCTTGGGTTCGGAAATTCCTGCAGATC
TTTTTATTTCTATCAAAGACTCATGGGTGGAACTAGCAACAGATATCCAT
GAATTCATCGTTTGA

protein sequence of Gchil1392.t1

>Gchil1392.t1 ID=Gchil1392.t1|Name=Gchil1392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=655bp
MTSELSPPKDTSDKLDNLSSTTGALIEAFDKILVLPYVDVLRLDALGDLS
IADVVLDLKQKYQELQGNTLPFARDLYSYAGLQLQTIPTISVSLDLATYL
NLNKVIIARHKIEALNVKKESETFRKTFVATLDVFENTIKELGEQIQNLT
TQIQDTKDLQEKERAVAVVGGVFTFMFTVAAVLAIVTTAGAVGAAGASTS
ASVASTTAVQGSAVASSGFFTALGASIGAASGTSGLVGVSAAISTAALGA
LAETIISSIEAGNYERAVTSLESLKTSAENARYQLLEVVEHMKVIEDSLD
DIVTVWTDVELSLSIIQSDVDSWSKENFSEELVAPTVEEWQEVRTAVAKY
TSVVSGDRSLRSDENSDVQLSADRIVSLAGSIAVSELKSNLQAPDIEFNA
KLSDLKKMREALHYTLSLPEVGNSLKSQTESAIRYLDETERGLGQLSGEL
SEFAKERLLWLDAFETSDGSQRVEMITGNKSVYQAFEEKITRAQDTEQKA
FSFQSAVGLVNNTLMRIIGEKTAEQTALKRQLKSIEAKRRKKKWLWVVPV
AGAVNEILDAANNIRGKIRKIRRDVQLISRSCQQIRMLSSTVSSSVKDST
LVVQTYSSILNDVRASADDAVLFTVLGSEIPADLFISIKDSWVELATDIH
EFIV*

mRNA from alignment at tig00004414_pilon:379160..381124+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1392.t1 ID=Gchil1392.t1|Name=Gchil1392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00004414_pilon:379160..381124+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCAGAGCTTTCCCCCCCGAAAGACACCTCCGACAAGCTCGATAA
TCTCTCTAGCACAACAGGTGCCCTCATTGAAGCATTCGACAAAATCCTTG
TTCTCCCGTACGTGGATGTCCTTCGACTCGATGCGCTCGGTGACTTGTCG
ATCGCAGATGTCGTTCTCGACCTGAAGCAGAAGTATCAGGAATTACAGGG
AAATACCTTACCCTTCGCTCGAGACCTGTACAGCTATGCCGGCCTTCAGC
TGCAAACCATTCCAACTATCAGTGTCTCGCTCGACTTGGCCACGTATCTA
AACCTCAACAAGGTCATCATTGCCCGTCATAAAATTGAGGCTTTGAACGT
AAAAAAGGAAAGTGAAACCTTTCGGAAAACATTCGTCGCCACCCTTGACG
TGTTTGAAAACACGATTAAAGAGCTCGGAGAGCAAATTCAGAACCTTACA
ACGCAGATTCAGGACACTAAGGACCTGCAGGAGAAGGAGCGCGCCGTTGC
AGTTGTGGGTGGGGTCTTCACCTTTATGTTCACTGTAGCCGCTGTCTTGG
CAATTGTCACCACAGCGGGGGCTGTGGGGGCGGCAGGTGCCTCCACTTCC
GCCTCTGTTGCATCCACCACAGCGGTCCAGGGGAGTGCGGTTGCATCATC
AGGTTTCTTTACCGCGTTGGGGGCTTCTATTGGCGCTGCCTCAGGAACCT
CAGGTCTAGTCGGGGTCTCTGCAGCCATTTCTACAGCTGCACTTGGTGCA
CTAGCAGAAACCATCATCTCCTCGATAGAGGCTGGTAATTATGAAAGAGC
TGTCACTAGTCTAGAGTCGCTCAAGACGAGTGCCGAGAACGCCCGATACC
AATTGCTTGAGGTTGTCGAACACATGAAAGTTATTGAGGACTCGCTGGAC
GATATCGTGACAGTATGGACAGATGTTGAATTGTCTCTCAGTATCATTCA
AAGCGATGTAGACAGTTGGAGTAAAGAAAACTTTTCGGAGGAACTCGTGG
CACCAACTGTCGAAGAATGGCAAGAAGTAAGGACCGCAGTTGCGAAGTAC
ACTTCAGTTGTGTCCGGAGACAGAAGCTTGAGATCTGACGAGAATTCAGA
TGTACAATTATCAGCCGACCGAATAGTTTCTCTGGCCGGGAGCATAGCAG
TTTCTGAGTTGAAGTCAAATCTCCAGGCACCAGATATTGAATTCAACGCC
AAGTTGTCTGATCTCAAGAAGATGCGAGAAGCGCTTCATTACACTTTGTC
GCTTCCAGAGGTGGGTAATTCACTGAAATCTCAAACTGAATCCGCCATAC
GATATCTTGATGAAACCGAAAGAGGCCTTGGGCAATTATCGGGTGAACTG
TCAGAATTTGCAAAAGAACGACTGCTTTGGCTTGACGCCTTTGAAACCTC
AGACGGATCACAGAGGGTGGAAATGATCACAGGTAATAAATCTGTGTATC
AGGCATTTGAAGAAAAAATTACTCGTGCACAAGACACCGAACAAAAGGCT
TTTTCATTTCAGTCCGCAGTTGGGCTCGTGAATAACACTCTCATGCGCAT
TATCGGCGAAAAAACTGCGGAGCAGACTGCGCTCAAAAGGCAGCTGAAGA
GTATCGAAGCCAAGAGAAGGAAGAAGAAGTGGTTATGGGTTGTCCCTGTC
GCGGGGGCCGTCAATGAAATTTTGGATGCGGCAAACAACATTCGTGGGAA
AATCAGGAAAATTCGCCGCGATGTTCAGCTAATCTCTCGAAGTTGTCAGC
AGATTCGCATGCTCAGCAGTACTGTCTCTTCTTCTGTGAAGGACAGTACT
CTTGTTGTGCAGACATACAGTTCAATTCTGAATGACGTTCGCGCAAGTGC
TGATGACGCCGTCCTTTTCACGGTCTTGGGTTCGGAAATTCCTGCAGATC
TTTTTATTTCTATCAAAGACTCATGGGTGGAACTAGCAACAGATATCCAT
GAATTCATCGTTTGA

Coding sequence (CDS) from alignment at tig00004414_pilon:379160..381124+

>Gchil1392.t1 ID=Gchil1392.t1|Name=Gchil1392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00004414_pilon:379160..381124+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCAGAGCTTTCCCCCCCGAAAGACACCTCCGACAAGCTCGATAA
TCTCTCTAGCACAACAGGTGCCCTCATTGAAGCATTCGACAAAATCCTTG
TTCTCCCGTACGTGGATGTCCTTCGACTCGATGCGCTCGGTGACTTGTCG
ATCGCAGATGTCGTTCTCGACCTGAAGCAGAAGTATCAGGAATTACAGGG
AAATACCTTACCCTTCGCTCGAGACCTGTACAGCTATGCCGGCCTTCAGC
TGCAAACCATTCCAACTATCAGTGTCTCGCTCGACTTGGCCACGTATCTA
AACCTCAACAAGGTCATCATTGCCCGTCATAAAATTGAGGCTTTGAACGT
AAAAAAGGAAAGTGAAACCTTTCGGAAAACATTCGTCGCCACCCTTGACG
TGTTTGAAAACACGATTAAAGAGCTCGGAGAGCAAATTCAGAACCTTACA
ACGCAGATTCAGGACACTAAGGACCTGCAGGAGAAGGAGCGCGCCGTTGC
AGTTGTGGGTGGGGTCTTCACCTTTATGTTCACTGTAGCCGCTGTCTTGG
CAATTGTCACCACAGCGGGGGCTGTGGGGGCGGCAGGTGCCTCCACTTCC
GCCTCTGTTGCATCCACCACAGCGGTCCAGGGGAGTGCGGTTGCATCATC
AGGTTTCTTTACCGCGTTGGGGGCTTCTATTGGCGCTGCCTCAGGAACCT
CAGGTCTAGTCGGGGTCTCTGCAGCCATTTCTACAGCTGCACTTGGTGCA
CTAGCAGAAACCATCATCTCCTCGATAGAGGCTGGTAATTATGAAAGAGC
TGTCACTAGTCTAGAGTCGCTCAAGACGAGTGCCGAGAACGCCCGATACC
AATTGCTTGAGGTTGTCGAACACATGAAAGTTATTGAGGACTCGCTGGAC
GATATCGTGACAGTATGGACAGATGTTGAATTGTCTCTCAGTATCATTCA
AAGCGATGTAGACAGTTGGAGTAAAGAAAACTTTTCGGAGGAACTCGTGG
CACCAACTGTCGAAGAATGGCAAGAAGTAAGGACCGCAGTTGCGAAGTAC
ACTTCAGTTGTGTCCGGAGACAGAAGCTTGAGATCTGACGAGAATTCAGA
TGTACAATTATCAGCCGACCGAATAGTTTCTCTGGCCGGGAGCATAGCAG
TTTCTGAGTTGAAGTCAAATCTCCAGGCACCAGATATTGAATTCAACGCC
AAGTTGTCTGATCTCAAGAAGATGCGAGAAGCGCTTCATTACACTTTGTC
GCTTCCAGAGGTGGGTAATTCACTGAAATCTCAAACTGAATCCGCCATAC
GATATCTTGATGAAACCGAAAGAGGCCTTGGGCAATTATCGGGTGAACTG
TCAGAATTTGCAAAAGAACGACTGCTTTGGCTTGACGCCTTTGAAACCTC
AGACGGATCACAGAGGGTGGAAATGATCACAGGTAATAAATCTGTGTATC
AGGCATTTGAAGAAAAAATTACTCGTGCACAAGACACCGAACAAAAGGCT
TTTTCATTTCAGTCCGCAGTTGGGCTCGTGAATAACACTCTCATGCGCAT
TATCGGCGAAAAAACTGCGGAGCAGACTGCGCTCAAAAGGCAGCTGAAGA
GTATCGAAGCCAAGAGAAGGAAGAAGAAGTGGTTATGGGTTGTCCCTGTC
GCGGGGGCCGTCAATGAAATTTTGGATGCGGCAAACAACATTCGTGGGAA
AATCAGGAAAATTCGCCGCGATGTTCAGCTAATCTCTCGAAGTTGTCAGC
AGATTCGCATGCTCAGCAGTACTGTCTCTTCTTCTGTGAAGGACAGTACT
CTTGTTGTGCAGACATACAGTTCAATTCTGAATGACGTTCGCGCAAGTGC
TGATGACGCCGTCCTTTTCACGGTCTTGGGTTCGGAAATTCCTGCAGATC
TTTTTATTTCTATCAAAGACTCATGGGTGGAACTAGCAACAGATATCCAT
GAATTCATCGTTTGA