Gchil1390.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1390.t1
Unique NameGchil1390.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:308855..310900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog378806.STAUR_2030
PFAMsp450
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K15629
KEGG ReactionR09740
Evalue1.56e-06
EggNOG OGsCOG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,42VMP@68525|delta/epsilon subdivisions,2WS6H@28221|Deltaproteobacteria,2YZU0@29|Myxococcales
EC1.11.2.4
DescriptionCytochrome P450
COG categoryC
BRITEko00000,ko00199,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1390Gchil1390Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 308855..310900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1Gchil1390.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 308855..310900 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1.start1Gchil1390.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 308855..308857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1.CDS1Gchil1390.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 308855..309131 +
Gchil1390.t1.CDS2Gchil1390.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 309893..310282 +
Gchil1390.t1.CDS3Gchil1390.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 310554..310900 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1.exon1Gchil1390.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 308855..309131 +
Gchil1390.t1.exon2Gchil1390.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 309893..310282 +
Gchil1390.t1.exon3Gchil1390.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 310554..310900 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1.intron1Gchil1390.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 309132..309892 +
Gchil1390.t1.intron2Gchil1390.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 310283..310553 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1390.t1.stop1Gchil1390.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 310898..310900 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1390.t1 ID=Gchil1390.t1|Name=Gchil1390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=338bp
MEHSPTGDDVVEEIARHVEGNDVGIPVDGPLPRGKWTRSVAVVVATQKGL
EVCDDGGEAVGFVGGMCEDLSVVLRASLLRGKGTHQEAREAKDSKTPVCV
WPSHTSSKIPKYASKRLQIPANRPQNLRGSCKYGIKHIGTHTLPLLWLRS
AFTPHASAHFLQHFAVELPSVGSSRRRAGTSQTQLTRDVTSSRQTPSRAA
LASQLALKRLHTSRPLVRFGLAWHRIAEGAMLGLDVYAAQRDDAYYQNAT
ELMADRFMRLREEGIKVPQIVPFGVPGSEHVCLGSLLARVGILCTVATLL
REFEFEVDPKQSRKMRYIPDTRPKSGVQISKMKKKSF*
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spliced messenger RNA

>Gchil1390.t1 ID=Gchil1390.t1|Name=Gchil1390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004414_pilon:308855..310900+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACACAGCCCCACGGGTGACGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATGTCGGCATCCCAGTTGATGGACCGCTGCCCAGAG
GGAAGTGGACCCGGAGCGTTGCCGTTGTTGTCGCCACCCAAAAGGGTCTT
GAAGTCTGCGACGACGGAGGTGAGGCCGTCGGCTTTGTGGGCGGTATGTG
TGAGGACCTCAGTGTGGTACTGCGGGCATCGCTTCTGCGAGGCAAGGGAA
CACACCAAGAAGCTAGAGAGGCAAAGGATTCGAAGACACCTGTTTGTGTT
TGGCCATCACACACGTCGTCAAAGATCCCTAAGTACGCTTCCAAACGATT
GCAGATACCTGCCAACCGCCCTCAAAACCTTCGCGGCAGCTGCAAATATG
GCATCAAGCACATTGGCACCCACACTCTTCCCCTTCTTTGGCTTCGCTCC
GCGTTCACGCCGCATGCGTCTGCGCACTTTTTGCAACATTTTGCTGTTGA
GCTCCCATCCGTTGGAAGCTCCAGACGCAGGGCTGGCACGAGTCAAACGC
AGTTGACACGGGATGTGACTTCGTCGCGCCAAACTCCATCCCGAGCTGCG
CTCGCCTCGCAGCTTGCGCTGAAACGCCTTCACACTAGCCGACCACTCGT
CCGCTTCGGCTTGGCTTGGCACCGCATTGCAGAAGGGGCTATGTTGGGTC
TGGACGTGTACGCAGCTCAGCGAGATGACGCGTATTATCAAAATGCTACT
GAATTGATGGCAGATCGATTTATGCGGCTACGAGAAGAGGGAATCAAGGT
GCCTCAAATTGTTCCCTTCGGCGTACCGGGCTCAGAACATGTATGTTTGG
GATCATTACTTGCCCGCGTGGGCATTCTTTGTACGGTGGCTACGTTGTTA
AGGGAGTTTGAGTTTGAGGTCGATCCGAAGCAAAGCCGGAAGATGAGGTA
TATTCCGGATACACGACCGAAATCAGGCGTTCAAATTTCGAAAATGAAGA
AGAAGTCGTTCTAA
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protein sequence of Gchil1390.t1

>Gchil1390.t1 ID=Gchil1390.t1|Name=Gchil1390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MEHSPTGDDVVEEIARHVEGNDVGIPVDGPLPRGKWTRSVAVVVATQKGL
EVCDDGGEAVGFVGGMCEDLSVVLRASLLRGKGTHQEAREAKDSKTPVCV
WPSHTSSKIPKYASKRLQIPANRPQNLRGSCKYGIKHIGTHTLPLLWLRS
AFTPHASAHFLQHFAVELPSVGSSRRRAGTSQTQLTRDVTSSRQTPSRAA
LASQLALKRLHTSRPLVRFGLAWHRIAEGAMLGLDVYAAQRDDAYYQNAT
ELMADRFMRLREEGIKVPQIVPFGVPGSEHVCLGSLLARVGILCTVATLL
REFEFEVDPKQSRKMRYIPDTRPKSGVQISKMKKKSF*
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mRNA from alignment at tig00004414_pilon:308855..310900+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1390.t1 ID=Gchil1390.t1|Name=Gchil1390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00004414_pilon:308855..310900+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACACAGCCCCACGGGTGACGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATGTCGGCATCCCAGTTGATGGACCGCTGCCCAGAG
GGAAGTGGACCCGGAGCGTTGCCGTTGTTGTCGCCACCCAAAAGGGTCTT
GAAGTCTGCGACGACGGAGGTGAGGCCGTCGGCTTTGTGGGCGGTATGTG
TGAGGACCTCAGTGTGGTACTGCGGGCATCGCTTCTGCGAGGCAAGGGAA
CACACCAAGAAGCTAGAGAGGCAAAGGGTAAGGATCATTGACTTCATTTT
GGTGCAGCTAGCAGAAAGTTTGAGCTCGATTAACGCTGGTTATGACCTGA
CTTGTAGTTGCGATAGATTTGAGAGATGTCGTGCTTGGGGGGAACGAGAC
CTGATAGCTGCGCCGATCGTCTCTTTATACGAGGGCGCTCCGGTCGAAGC
GGGCGCAATACTCGGTGGCGCTCATGCCGTTCGCCTGTTCGTGAGGGTAT
TGAGCTGGGGTGCTTTGAATGCCGTGGTCCTCTTCAACAATGATCTCGAT
CGCGGGGGATGAAGGATACCACGAAGCACAAAGGAACAGTCGCAAATGGC
CCCCCTGTGGAACGCACACACTTGGCAACAGTTCTTCCGCAAGCATAAGT
GGACTGTGTTGCAGATTCTGACGTCAGCGCTCCACCGTGATTGGCGTGGA
TGAGGAAACGTGGTGGCAAGTGGCGATGCATCTGTGCAGTCTCTGCATTG
CTGCCCGCTTGTGGGCGACTCTGTAATGGTGGCGTCCTCTGCAGCATCAG
CTTGAAGCCATGCCGCATCTCGCTGTCCTCCTCCGTGGCCAGCTGCACTG
AATCGCCATTCAACCAGCCTAGTTGAATCGAATGGGTCATTGTTTCACCC
ATTTCTCCTGCGACCCGCCAGTGATACCAATTGAGAGCGATACTCTTATC
GGTCGAGTAGTGTTGGTCGACGAAGGGTAGTTGGCTTTGCTGAGTTGAAC
CCAGGCTGAAAAGCATTGGTCGCTCTCTTCATTCGAAGATTCGAAGACAC
CTGTTTGTGTTTGGCCATCACACACGTCGTCAAAGATCCCTAAGTACGCT
TCCAAACGATTGCAGATACCTGCCAACCGCCCTCAAAACCTTCGCGGCAG
CTGCAAATATGGCATCAAGCACATTGGCACCCACACTCTTCCCCTTCTTT
GGCTTCGCTCCGCGTTCACGCCGCATGCGTCTGCGCACTTTTTGCAACAT
TTTGCTGTTGAGCTCCCATCCGTTGGAAGCTCCAGACGCAGGGCTGGCAC
GAGTCAAACGCAGTTGACACGGGATGTGACTTCGTCGCGCCAAACTCCAT
CCCGAGCTGCGCTCGCCTCGCAGCTTGCGCTGAAACGCCTTCACACTAGC
CGACCACTCGTCCGCTTCGGCTTGGCTTGTGATTCGGCAGCTCCTTGCAG
GCCACTGTGCGCTTCTTGGTTCGCCGCGCTTCTGGGAGGAAATCAGCGGC
GAATGCGATGACAGCCTCGTGCTTTGATCTGCTGCAGATGCCAAGGGGTT
TTGTGGGATGGAGGAGAGACTTTTGAGTCGCGCCGGGGATTTCGAGCCGC
CTGGGAGCCCCGAGATCATCGTTTGTTGGAGAGGTACTACGCTTATATCC
TCCGGTAGGACTCTATTTTCGAAAACCACGCGGGATACGACTGTGCTAGG
GCACCGCATTGCAGAAGGGGCTATGTTGGGTCTGGACGTGTACGCAGCTC
AGCGAGATGACGCGTATTATCAAAATGCTACTGAATTGATGGCAGATCGA
TTTATGCGGCTACGAGAAGAGGGAATCAAGGTGCCTCAAATTGTTCCCTT
CGGCGTACCGGGCTCAGAACATGTATGTTTGGGATCATTACTTGCCCGCG
TGGGCATTCTTTGTACGGTGGCTACGTTGTTAAGGGAGTTTGAGTTTGAG
GTCGATCCGAAGCAAAGCCGGAAGATGAGGTATATTCCGGATACACGACC
GAAATCAGGCGTTCAAATTTCGAAAATGAAGAAGAAGTCGTTCTAA
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Coding sequence (CDS) from alignment at tig00004414_pilon:308855..310900+

>Gchil1390.t1 ID=Gchil1390.t1|Name=Gchil1390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00004414_pilon:308855..310900+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACACAGCCCCACGGGTGACGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATGTCGGCATCCCAGTTGATGGACCGCTGCCCAGAG
GGAAGTGGACCCGGAGCGTTGCCGTTGTTGTCGCCACCCAAAAGGGTCTT
GAAGTCTGCGACGACGGAGGTGAGGCCGTCGGCTTTGTGGGCGGTATGTG
TGAGGACCTCAGTGTGGTACTGCGGGCATCGCTTCTGCGAGGCAAGGGAA
CACACCAAGAAGCTAGAGAGGCAAAGGATTCGAAGACACCTGTTTGTGTT
TGGCCATCACACACGTCGTCAAAGATCCCTAAGTACGCTTCCAAACGATT
GCAGATACCTGCCAACCGCCCTCAAAACCTTCGCGGCAGCTGCAAATATG
GCATCAAGCACATTGGCACCCACACTCTTCCCCTTCTTTGGCTTCGCTCC
GCGTTCACGCCGCATGCGTCTGCGCACTTTTTGCAACATTTTGCTGTTGA
GCTCCCATCCGTTGGAAGCTCCAGACGCAGGGCTGGCACGAGTCAAACGC
AGTTGACACGGGATGTGACTTCGTCGCGCCAAACTCCATCCCGAGCTGCG
CTCGCCTCGCAGCTTGCGCTGAAACGCCTTCACACTAGCCGACCACTCGT
CCGCTTCGGCTTGGCTTGGCACCGCATTGCAGAAGGGGCTATGTTGGGTC
TGGACGTGTACGCAGCTCAGCGAGATGACGCGTATTATCAAAATGCTACT
GAATTGATGGCAGATCGATTTATGCGGCTACGAGAAGAGGGAATCAAGGT
GCCTCAAATTGTTCCCTTCGGCGTACCGGGCTCAGAACATGTATGTTTGG
GATCATTACTTGCCCGCGTGGGCATTCTTTGTACGGTGGCTACGTTGTTA
AGGGAGTTTGAGTTTGAGGTCGATCCGAAGCAAAGCCGGAAGATGAGGTA
TATTCCGGATACACGACCGAAATCAGGCGTTCAAATTTCGAAAATGAAGA
AGAAGTCGTTCTAA
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