Gchil1389.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1389.t1
Unique NameGchil1389.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:258717..260240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985255.APHJ01000054_gene1972
PFAMsCotH
Max annot lvl976|Bacteroidetes
Evalue6.2e-12
EggNOG OGsCOG5337@1|root,COG5337@2|Bacteria,4NI4U@976|Bacteroidetes,1HXYN@117743|Flavobacteriia
DescriptionCOG5337 Spore coat assembly protein
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1389Gchil1389Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 258717..260240 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1389.t1.stop1Gchil1389.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 258717..258719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1389.t1.CDS1Gchil1389.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 258717..260240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1389.t1.exon1Gchil1389.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 258717..260240 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1389.t1.start1Gchil1389.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 260238..260240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1389.t1Gchil1389.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 258717..260240 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1389.t1 ID=Gchil1389.t1|Name=Gchil1389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MVSSTESPSTSDSIFYQKPDQPDMTGAAIFDISSSNIFNRDNHKIHIRIH
QLVFDKVLSDGAADIDSGYGLVDEFCLDGHKIENVGIKVRGNTSAANIKR
QFKFKFDAEETFAWREGSMQQVTFPVNDDRRFFGEQGFSVRASQNDPSRI
RETLAGKVFREATLGEQDPQRPWRTRGALVYRTAFATLYVTNGRTVEEGY
DSGHPEYRVPFEGKLYDPKGLYVITENIDKTFLKTRFERFDEDKVKGYLF
QADKGMAYFQKDKYSRTGWKCELVKGKKPKDEEDFLKADEKMLDLIDFLD
EMPHEEKIRSRFDMDSLNGYLGGALLATHWDSLAANRNNDFMFYLKRDIL
DDEMNPVLDEQGEPREEKKWYMITWDLDNTLWDRPGGSEVQDPYKSWFSN
YLYDPARKEECKTRLLENIFDRSENEQIRSAYRHVLRDLLDGFYSESEYE
KEVDSLMKRTGDAIEETRREVAAAEWQKEWGERNNPQDFEEIKSHARVRR
SKVGGQL*
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spliced messenger RNA

>Gchil1389.t1 ID=Gchil1389.t1|Name=Gchil1389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004414_pilon:258717..260240- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCTCCACCGAATCGCCGTCCACTTCGGACTCGATATTTTACCA
GAAACCCGATCAACCCGACATGACAGGCGCAGCCATCTTCGACATATCCT
CCAGCAACATCTTCAATCGCGACAACCACAAGATCCACATTCGCATCCAC
CAACTTGTGTTCGACAAGGTGTTGTCCGATGGCGCCGCCGACATCGACTC
GGGCTACGGGCTCGTCGACGAGTTCTGTCTTGATGGTCACAAGATCGAGA
ACGTCGGCATCAAGGTACGCGGCAACACGTCGGCTGCCAACATCAAGCGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGAGACATTTGCATGGCGCGAAGG
TAGTATGCAGCAAGTGACGTTCCCCGTCAATGATGACCGCCGCTTCTTCG
GTGAACAAGGCTTCTCCGTGCGCGCCAGTCAAAACGATCCGTCACGAATT
CGCGAGACGCTCGCCGGAAAGGTGTTTCGCGAGGCAACGCTTGGCGAACA
AGATCCGCAACGACCGTGGCGCACTCGAGGCGCTCTTGTCTATCGTACAG
CTTTTGCCACATTGTATGTGACCAACGGACGTACCGTGGAGGAGGGATAC
GATAGCGGACACCCGGAATACCGTGTGCCATTCGAGGGAAAGCTGTACGA
TCCCAAGGGGCTGTATGTGATCACGGAAAACATCGACAAGACGTTTCTGA
AGACAAGGTTTGAGCGCTTTGACGAAGACAAGGTGAAAGGATACCTTTTC
CAAGCCGACAAGGGCATGGCGTACTTTCAGAAGGACAAGTACTCTCGGAC
GGGATGGAAGTGTGAGCTGGTTAAGGGGAAGAAGCCGAAAGACGAGGAGG
ATTTTTTGAAAGCCGACGAAAAGATGCTCGATCTGATTGATTTCCTCGAT
GAAATGCCGCACGAGGAGAAGATCCGCTCCCGATTCGACATGGATAGCCT
GAACGGCTACTTGGGCGGGGCGCTCCTCGCAACACACTGGGACAGCCTTG
CGGCCAATCGTAACAACGACTTTATGTTTTACCTGAAGCGAGATATTCTT
GACGATGAAATGAATCCTGTTTTAGACGAGCAGGGCGAGCCACGAGAAGA
GAAGAAATGGTACATGATCACATGGGATCTGGATAATACTCTTTGGGATC
GGCCCGGAGGCTCAGAGGTTCAGGACCCGTACAAGTCGTGGTTCTCCAAC
TACCTGTACGACCCGGCGCGCAAGGAGGAATGCAAGACGCGGCTGCTGGA
GAACATTTTCGACAGGAGTGAAAACGAGCAGATCCGTAGCGCATACCGCC
ATGTACTACGCGACCTTCTCGACGGCTTTTACAGCGAAAGCGAGTATGAG
AAAGAAGTGGACAGCCTGATGAAGAGGACAGGGGATGCGATTGAGGAGAC
TCGACGAGAGGTAGCTGCAGCTGAGTGGCAAAAGGAATGGGGTGAGCGAA
ACAATCCGCAAGACTTTGAGGAAATCAAGAGTCACGCGCGGGTGCGCAGG
AGCAAGGTCGGCGGGCAGTTGTAG
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protein sequence of Gchil1389.t1

>Gchil1389.t1 ID=Gchil1389.t1|Name=Gchil1389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MVSSTESPSTSDSIFYQKPDQPDMTGAAIFDISSSNIFNRDNHKIHIRIH
QLVFDKVLSDGAADIDSGYGLVDEFCLDGHKIENVGIKVRGNTSAANIKR
QFKFKFDAEETFAWREGSMQQVTFPVNDDRRFFGEQGFSVRASQNDPSRI
RETLAGKVFREATLGEQDPQRPWRTRGALVYRTAFATLYVTNGRTVEEGY
DSGHPEYRVPFEGKLYDPKGLYVITENIDKTFLKTRFERFDEDKVKGYLF
QADKGMAYFQKDKYSRTGWKCELVKGKKPKDEEDFLKADEKMLDLIDFLD
EMPHEEKIRSRFDMDSLNGYLGGALLATHWDSLAANRNNDFMFYLKRDIL
DDEMNPVLDEQGEPREEKKWYMITWDLDNTLWDRPGGSEVQDPYKSWFSN
YLYDPARKEECKTRLLENIFDRSENEQIRSAYRHVLRDLLDGFYSESEYE
KEVDSLMKRTGDAIEETRREVAAAEWQKEWGERNNPQDFEEIKSHARVRR
SKVGGQL*
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mRNA from alignment at tig00004414_pilon:258717..260240-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1389.t1 ID=Gchil1389.t1|Name=Gchil1389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004414_pilon:258717..260240- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCTCCACCGAATCGCCGTCCACTTCGGACTCGATATTTTACCA
GAAACCCGATCAACCCGACATGACAGGCGCAGCCATCTTCGACATATCCT
CCAGCAACATCTTCAATCGCGACAACCACAAGATCCACATTCGCATCCAC
CAACTTGTGTTCGACAAGGTGTTGTCCGATGGCGCCGCCGACATCGACTC
GGGCTACGGGCTCGTCGACGAGTTCTGTCTTGATGGTCACAAGATCGAGA
ACGTCGGCATCAAGGTACGCGGCAACACGTCGGCTGCCAACATCAAGCGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGAGACATTTGCATGGCGCGAAGG
TAGTATGCAGCAAGTGACGTTCCCCGTCAATGATGACCGCCGCTTCTTCG
GTGAACAAGGCTTCTCCGTGCGCGCCAGTCAAAACGATCCGTCACGAATT
CGCGAGACGCTCGCCGGAAAGGTGTTTCGCGAGGCAACGCTTGGCGAACA
AGATCCGCAACGACCGTGGCGCACTCGAGGCGCTCTTGTCTATCGTACAG
CTTTTGCCACATTGTATGTGACCAACGGACGTACCGTGGAGGAGGGATAC
GATAGCGGACACCCGGAATACCGTGTGCCATTCGAGGGAAAGCTGTACGA
TCCCAAGGGGCTGTATGTGATCACGGAAAACATCGACAAGACGTTTCTGA
AGACAAGGTTTGAGCGCTTTGACGAAGACAAGGTGAAAGGATACCTTTTC
CAAGCCGACAAGGGCATGGCGTACTTTCAGAAGGACAAGTACTCTCGGAC
GGGATGGAAGTGTGAGCTGGTTAAGGGGAAGAAGCCGAAAGACGAGGAGG
ATTTTTTGAAAGCCGACGAAAAGATGCTCGATCTGATTGATTTCCTCGAT
GAAATGCCGCACGAGGAGAAGATCCGCTCCCGATTCGACATGGATAGCCT
GAACGGCTACTTGGGCGGGGCGCTCCTCGCAACACACTGGGACAGCCTTG
CGGCCAATCGTAACAACGACTTTATGTTTTACCTGAAGCGAGATATTCTT
GACGATGAAATGAATCCTGTTTTAGACGAGCAGGGCGAGCCACGAGAAGA
GAAGAAATGGTACATGATCACATGGGATCTGGATAATACTCTTTGGGATC
GGCCCGGAGGCTCAGAGGTTCAGGACCCGTACAAGTCGTGGTTCTCCAAC
TACCTGTACGACCCGGCGCGCAAGGAGGAATGCAAGACGCGGCTGCTGGA
GAACATTTTCGACAGGAGTGAAAACGAGCAGATCCGTAGCGCATACCGCC
ATGTACTACGCGACCTTCTCGACGGCTTTTACAGCGAAAGCGAGTATGAG
AAAGAAGTGGACAGCCTGATGAAGAGGACAGGGGATGCGATTGAGGAGAC
TCGACGAGAGGTAGCTGCAGCTGAGTGGCAAAAGGAATGGGGTGAGCGAA
ACAATCCGCAAGACTTTGAGGAAATCAAGAGTCACGCGCGGGTGCGCAGG
AGCAAGGTCGGCGGGCAGTTGTAG
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Coding sequence (CDS) from alignment at tig00004414_pilon:258717..260240-

>Gchil1389.t1 ID=Gchil1389.t1|Name=Gchil1389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00004414_pilon:258717..260240- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCTCCACCGAATCGCCGTCCACTTCGGACTCGATATTTTACCA
GAAACCCGATCAACCCGACATGACAGGCGCAGCCATCTTCGACATATCCT
CCAGCAACATCTTCAATCGCGACAACCACAAGATCCACATTCGCATCCAC
CAACTTGTGTTCGACAAGGTGTTGTCCGATGGCGCCGCCGACATCGACTC
GGGCTACGGGCTCGTCGACGAGTTCTGTCTTGATGGTCACAAGATCGAGA
ACGTCGGCATCAAGGTACGCGGCAACACGTCGGCTGCCAACATCAAGCGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGAGACATTTGCATGGCGCGAAGG
TAGTATGCAGCAAGTGACGTTCCCCGTCAATGATGACCGCCGCTTCTTCG
GTGAACAAGGCTTCTCCGTGCGCGCCAGTCAAAACGATCCGTCACGAATT
CGCGAGACGCTCGCCGGAAAGGTGTTTCGCGAGGCAACGCTTGGCGAACA
AGATCCGCAACGACCGTGGCGCACTCGAGGCGCTCTTGTCTATCGTACAG
CTTTTGCCACATTGTATGTGACCAACGGACGTACCGTGGAGGAGGGATAC
GATAGCGGACACCCGGAATACCGTGTGCCATTCGAGGGAAAGCTGTACGA
TCCCAAGGGGCTGTATGTGATCACGGAAAACATCGACAAGACGTTTCTGA
AGACAAGGTTTGAGCGCTTTGACGAAGACAAGGTGAAAGGATACCTTTTC
CAAGCCGACAAGGGCATGGCGTACTTTCAGAAGGACAAGTACTCTCGGAC
GGGATGGAAGTGTGAGCTGGTTAAGGGGAAGAAGCCGAAAGACGAGGAGG
ATTTTTTGAAAGCCGACGAAAAGATGCTCGATCTGATTGATTTCCTCGAT
GAAATGCCGCACGAGGAGAAGATCCGCTCCCGATTCGACATGGATAGCCT
GAACGGCTACTTGGGCGGGGCGCTCCTCGCAACACACTGGGACAGCCTTG
CGGCCAATCGTAACAACGACTTTATGTTTTACCTGAAGCGAGATATTCTT
GACGATGAAATGAATCCTGTTTTAGACGAGCAGGGCGAGCCACGAGAAGA
GAAGAAATGGTACATGATCACATGGGATCTGGATAATACTCTTTGGGATC
GGCCCGGAGGCTCAGAGGTTCAGGACCCGTACAAGTCGTGGTTCTCCAAC
TACCTGTACGACCCGGCGCGCAAGGAGGAATGCAAGACGCGGCTGCTGGA
GAACATTTTCGACAGGAGTGAAAACGAGCAGATCCGTAGCGCATACCGCC
ATGTACTACGCGACCTTCTCGACGGCTTTTACAGCGAAAGCGAGTATGAG
AAAGAAGTGGACAGCCTGATGAAGAGGACAGGGGATGCGATTGAGGAGAC
TCGACGAGAGGTAGCTGCAGCTGAGTGGCAAAAGGAATGGGGTGAGCGAA
ACAATCCGCAAGACTTTGAGGAAATCAAGAGTCACGCGCGGGTGCGCAGG
AGCAAGGTCGGCGGGCAGTTGTAG
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