Gchil1386.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1386.t1
Unique NameGchil1386.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:229789..230655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1386Gchil1386Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 229789..230655 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1386.t1.start1Gchil1386.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 229789..229791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1386.t1.CDS1Gchil1386.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 229789..230655 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1386.t1.exon1Gchil1386.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 229789..230655 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1386.t1.stop1Gchil1386.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 230653..230655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1386.t1Gchil1386.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 229789..230655 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1386.t1 ID=Gchil1386.t1|Name=Gchil1386.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=289bp
MNSFFTTSAATIAPRNLFVTFALCLFTALLPTNASPIFDGISGAPCTSAE
QCKGSRTCYYIPLDSLASFGPCNGRDECFCAPIDISDLICSSDDDCSVPG
EVCAGFDQLKVSGCLSLETVEKYPQLFRTDNDADLKVSDEAVAQSPDDSH
TPLGNSEGIQGVALVEELEPSSSPKSENACIALKHLEHLSSDQLLFPTHV
PASVLCDSHGNCATPGHVISFEGRFMMMKSYCASVGCQTTIELVNSPKYV
PKLRIPSQSNTLLFTPFAARYASRIEEKILRVALRIGL*
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spliced messenger RNA

>Gchil1386.t1 ID=Gchil1386.t1|Name=Gchil1386.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00004414_pilon:229789..230655+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCATTCTTCACCACTTCCGCTGCTACTATTGCTCCCCGAAACTT
ATTCGTCACATTTGCTCTGTGCCTCTTTACCGCCTTGCTCCCAACAAACG
CGTCTCCGATTTTCGATGGTATAAGCGGAGCCCCATGCACATCTGCAGAA
CAATGCAAAGGCTCAAGAACATGTTACTACATCCCCTTAGACTCCCTGGC
ATCATTCGGACCCTGCAATGGAAGAGATGAGTGTTTCTGCGCCCCCATCG
ATATTAGTGACCTAATATGTTCTTCGGACGACGATTGCTCAGTTCCCGGC
GAAGTGTGCGCAGGTTTTGATCAACTGAAAGTTAGCGGCTGCCTCTCTCT
TGAAACTGTAGAGAAGTATCCCCAACTCTTTCGCACAGATAACGATGCTG
ACCTTAAAGTATCCGACGAGGCGGTTGCGCAATCTCCGGATGACAGTCAC
ACACCTCTCGGAAACAGCGAGGGTATACAAGGCGTCGCTCTAGTGGAAGA
GCTGGAACCATCCAGCTCCCCGAAATCTGAAAATGCATGCATCGCATTGA
AACATCTGGAACACTTGTCTTCAGATCAGCTTCTATTTCCAACCCATGTT
CCCGCCTCTGTTCTTTGCGACTCGCACGGAAACTGTGCCACTCCGGGACA
TGTTATCAGCTTTGAAGGACGATTCATGATGATGAAGTCATATTGCGCTT
CTGTCGGCTGCCAGACTACTATTGAACTGGTGAACAGTCCGAAATATGTC
CCCAAGCTCCGTATTCCCTCGCAGTCGAACACGCTCCTGTTCACTCCTTT
TGCGGCGCGGTATGCATCGCGTATTGAAGAAAAGATTCTCAGAGTTGCCT
TACGAATTGGGCTTTGA
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protein sequence of Gchil1386.t1

>Gchil1386.t1 ID=Gchil1386.t1|Name=Gchil1386.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=289bp
MNSFFTTSAATIAPRNLFVTFALCLFTALLPTNASPIFDGISGAPCTSAE
QCKGSRTCYYIPLDSLASFGPCNGRDECFCAPIDISDLICSSDDDCSVPG
EVCAGFDQLKVSGCLSLETVEKYPQLFRTDNDADLKVSDEAVAQSPDDSH
TPLGNSEGIQGVALVEELEPSSSPKSENACIALKHLEHLSSDQLLFPTHV
PASVLCDSHGNCATPGHVISFEGRFMMMKSYCASVGCQTTIELVNSPKYV
PKLRIPSQSNTLLFTPFAARYASRIEEKILRVALRIGL*
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mRNA from alignment at tig00004414_pilon:229789..230655+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1386.t1 ID=Gchil1386.t1|Name=Gchil1386.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00004414_pilon:229789..230655+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTCATTCTTCACCACTTCCGCTGCTACTATTGCTCCCCGAAACTT
ATTCGTCACATTTGCTCTGTGCCTCTTTACCGCCTTGCTCCCAACAAACG
CGTCTCCGATTTTCGATGGTATAAGCGGAGCCCCATGCACATCTGCAGAA
CAATGCAAAGGCTCAAGAACATGTTACTACATCCCCTTAGACTCCCTGGC
ATCATTCGGACCCTGCAATGGAAGAGATGAGTGTTTCTGCGCCCCCATCG
ATATTAGTGACCTAATATGTTCTTCGGACGACGATTGCTCAGTTCCCGGC
GAAGTGTGCGCAGGTTTTGATCAACTGAAAGTTAGCGGCTGCCTCTCTCT
TGAAACTGTAGAGAAGTATCCCCAACTCTTTCGCACAGATAACGATGCTG
ACCTTAAAGTATCCGACGAGGCGGTTGCGCAATCTCCGGATGACAGTCAC
ACACCTCTCGGAAACAGCGAGGGTATACAAGGCGTCGCTCTAGTGGAAGA
GCTGGAACCATCCAGCTCCCCGAAATCTGAAAATGCATGCATCGCATTGA
AACATCTGGAACACTTGTCTTCAGATCAGCTTCTATTTCCAACCCATGTT
CCCGCCTCTGTTCTTTGCGACTCGCACGGAAACTGTGCCACTCCGGGACA
TGTTATCAGCTTTGAAGGACGATTCATGATGATGAAGTCATATTGCGCTT
CTGTCGGCTGCCAGACTACTATTGAACTGGTGAACAGTCCGAAATATGTC
CCCAAGCTCCGTATTCCCTCGCAGTCGAACACGCTCCTGTTCACTCCTTT
TGCGGCGCGGTATGCATCGCGTATTGAAGAAAAGATTCTCAGAGTTGCCT
TACGAATTGGGCTTTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:229789..230655+

>Gchil1386.t1 ID=Gchil1386.t1|Name=Gchil1386.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00004414_pilon:229789..230655+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTCATTCTTCACCACTTCCGCTGCTACTATTGCTCCCCGAAACTT
ATTCGTCACATTTGCTCTGTGCCTCTTTACCGCCTTGCTCCCAACAAACG
CGTCTCCGATTTTCGATGGTATAAGCGGAGCCCCATGCACATCTGCAGAA
CAATGCAAAGGCTCAAGAACATGTTACTACATCCCCTTAGACTCCCTGGC
ATCATTCGGACCCTGCAATGGAAGAGATGAGTGTTTCTGCGCCCCCATCG
ATATTAGTGACCTAATATGTTCTTCGGACGACGATTGCTCAGTTCCCGGC
GAAGTGTGCGCAGGTTTTGATCAACTGAAAGTTAGCGGCTGCCTCTCTCT
TGAAACTGTAGAGAAGTATCCCCAACTCTTTCGCACAGATAACGATGCTG
ACCTTAAAGTATCCGACGAGGCGGTTGCGCAATCTCCGGATGACAGTCAC
ACACCTCTCGGAAACAGCGAGGGTATACAAGGCGTCGCTCTAGTGGAAGA
GCTGGAACCATCCAGCTCCCCGAAATCTGAAAATGCATGCATCGCATTGA
AACATCTGGAACACTTGTCTTCAGATCAGCTTCTATTTCCAACCCATGTT
CCCGCCTCTGTTCTTTGCGACTCGCACGGAAACTGTGCCACTCCGGGACA
TGTTATCAGCTTTGAAGGACGATTCATGATGATGAAGTCATATTGCGCTT
CTGTCGGCTGCCAGACTACTATTGAACTGGTGAACAGTCCGAAATATGTC
CCCAAGCTCCGTATTCCCTCGCAGTCGAACACGCTCCTGTTCACTCCTTT
TGCGGCGCGGTATGCATCGCGTATTGAAGAAAAGATTCTCAGAGTTGCCT
TACGAATTGGGCTTTGA
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