Gchil1382.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1382.t1
Unique NameGchil1382.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:207749..209453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1382Gchil1382Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 207749..209453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1Gchil1382.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 207749..209453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1.stop1Gchil1382.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 207749..207751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1.CDS1Gchil1382.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 207749..207951 -
Gchil1382.t1.CDS2Gchil1382.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 208034..209453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1.exon1Gchil1382.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 207749..207951 -
Gchil1382.t1.exon2Gchil1382.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 208034..209453 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1.intron1Gchil1382.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 207952..208033 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1382.t1.start1Gchil1382.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 209451..209453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1382.t1 ID=Gchil1382.t1|Name=Gchil1382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=541bp
MPTWLILLVWLVGCICQASATSKLHHGASSSGSPTVLRGRTLIGAASGSS
EFAGSASKPSNLLALQVPTQRVLEFAVELKQDAVLFDELEEDGVQVRACS
RDEAARKATIHLSGASLDKSDFQKGTAFVIDVDDWEKNCAPVLPVEGVDE
ADDALFYVISGMSADGENVFLDMNIVSGSEIAPTVDIDIREEPVLATKLP
NKVLFSDSPAFVSSERLLVSARSVIANDSLPVVARPSISARSKVTLFTGV
ELEVDASLSANINRFKVKRLLKTEVQWEQSLEAQLNAELTVSGKIEAERS
GEIFRKPIPKFGFSTKIPFVGRIRAGAFGKVDWIAELEVGAALRANIHAS
HRTKQRVTARVIPPRFNSRNLLRADDGSSGRSTFTFENEAEASITGFIGL
RPAIGVELTLGKKGVEGNIGAKLGLEAETTIKNPPFKPFTGSGLKVGRCD
QCHRLRGGLKIKGKDLGVQLLKNAVKPTAPRHPPLAHARNVPPRRNAAQA
SPAFEECASGAASLVSRAGSVLGASRVLVFSGNAGGPLVP*
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spliced messenger RNA

>Gchil1382.t1 ID=Gchil1382.t1|Name=Gchil1382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00004414_pilon:207749..209453- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACCTGGCTCATTTTGCTTGTGTGGTTGGTAGGTTGTATTTGCCA
GGCTTCAGCTACCTCCAAGCTCCACCACGGCGCCTCTTCAAGCGGTTCTC
CTACAGTTCTCCGCGGACGCACTCTCATCGGCGCAGCATCGGGGAGTAGC
GAATTTGCAGGAAGCGCCTCCAAACCCTCCAATTTGCTAGCGCTTCAGGT
ACCGACTCAAAGAGTGCTCGAGTTTGCTGTGGAGCTCAAACAAGATGCGG
TTTTGTTTGATGAGCTCGAAGAGGACGGAGTGCAAGTTAGGGCGTGCTCA
CGTGACGAGGCTGCCCGCAAGGCTACCATCCATCTCAGTGGCGCCAGCCT
AGACAAATCGGATTTTCAGAAAGGAACTGCATTTGTCATCGACGTGGATG
ACTGGGAAAAGAACTGTGCGCCAGTGCTGCCCGTGGAAGGAGTGGACGAG
GCTGACGATGCGCTGTTCTACGTCATCAGTGGCATGAGTGCCGATGGCGA
AAACGTGTTCTTGGACATGAACATTGTCTCCGGCTCGGAGATTGCCCCGA
CCGTTGACATTGACATTCGCGAAGAACCTGTGTTGGCAACGAAATTGCCC
AACAAAGTCCTCTTCAGTGACAGCCCTGCATTCGTCTCATCCGAACGCCT
GTTAGTTTCTGCCCGTTCAGTGATAGCGAACGACAGTCTGCCTGTCGTTG
CGCGCCCTAGTATTTCCGCGAGGAGCAAGGTAACGTTGTTCACCGGCGTC
GAGCTCGAAGTTGACGCATCACTCTCCGCAAACATCAACAGATTCAAAGT
CAAACGTCTGCTCAAGACAGAGGTGCAATGGGAGCAGAGTCTTGAAGCCC
AGCTTAACGCAGAGCTGACAGTGTCCGGAAAGATAGAAGCAGAAAGAAGT
GGTGAGATTTTTCGCAAGCCCATCCCCAAGTTCGGCTTCTCCACCAAAAT
CCCGTTCGTGGGCCGCATCCGGGCTGGGGCATTCGGAAAGGTCGATTGGA
TTGCGGAATTGGAGGTTGGTGCGGCGCTGCGAGCAAACATCCACGCTTCT
CATCGTACGAAGCAACGTGTGACAGCCAGAGTTATCCCTCCCAGGTTCAA
CTCCAGAAACCTTCTGCGGGCTGACGACGGTAGCTCTGGAAGGTCTACCT
TTACTTTTGAGAACGAGGCAGAAGCAAGCATCACTGGATTTATCGGGCTG
CGCCCGGCGATTGGAGTGGAGCTCACGCTTGGAAAGAAAGGGGTGGAAGG
AAACATTGGGGCCAAACTCGGCTTGGAAGCAGAAACGACCATTAAGAACC
CTCCGTTCAAACCGTTCACAGGAAGTGGACTGAAAGTGGGAAGGTGTGAC
CAGTGTCACAGGTTGAGGGGAGGGCTGAAAATCAAAGGAAAGGATCTTGG
TGTGCAGCTGCTGAAGAACGCTGTGAAGCCGACGGCTCCGCGCCATCCAC
CCCTAGCACATGCAAGAAATGTTCCACCACGAAGAAATGCAGCACAGGCT
TCTCCTGCGTTCGAGGAGTGTGCAAGCGGAGCCGCAAGCCTGGTCAGTCG
TGCGGGGAGTGTGCTCGGTGCATCTCGAGTTCTTGTGTTCTCGGGAAATG
CAGGAGGACCTCTGGTCCCCTGA
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protein sequence of Gchil1382.t1

>Gchil1382.t1 ID=Gchil1382.t1|Name=Gchil1382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=541bp
MPTWLILLVWLVGCICQASATSKLHHGASSSGSPTVLRGRTLIGAASGSS
EFAGSASKPSNLLALQVPTQRVLEFAVELKQDAVLFDELEEDGVQVRACS
RDEAARKATIHLSGASLDKSDFQKGTAFVIDVDDWEKNCAPVLPVEGVDE
ADDALFYVISGMSADGENVFLDMNIVSGSEIAPTVDIDIREEPVLATKLP
NKVLFSDSPAFVSSERLLVSARSVIANDSLPVVARPSISARSKVTLFTGV
ELEVDASLSANINRFKVKRLLKTEVQWEQSLEAQLNAELTVSGKIEAERS
GEIFRKPIPKFGFSTKIPFVGRIRAGAFGKVDWIAELEVGAALRANIHAS
HRTKQRVTARVIPPRFNSRNLLRADDGSSGRSTFTFENEAEASITGFIGL
RPAIGVELTLGKKGVEGNIGAKLGLEAETTIKNPPFKPFTGSGLKVGRCD
QCHRLRGGLKIKGKDLGVQLLKNAVKPTAPRHPPLAHARNVPPRRNAAQA
SPAFEECASGAASLVSRAGSVLGASRVLVFSGNAGGPLVP*
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mRNA from alignment at tig00004414_pilon:207749..209453-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1382.t1 ID=Gchil1382.t1|Name=Gchil1382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1705bp|location=Sequence derived from alignment at tig00004414_pilon:207749..209453- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTACCTGGCTCATTTTGCTTGTGTGGTTGGTAGGTTGTATTTGCCA
GGCTTCAGCTACCTCCAAGCTCCACCACGGCGCCTCTTCAAGCGGTTCTC
CTACAGTTCTCCGCGGACGCACTCTCATCGGCGCAGCATCGGGGAGTAGC
GAATTTGCAGGAAGCGCCTCCAAACCCTCCAATTTGCTAGCGCTTCAGGT
ACCGACTCAAAGAGTGCTCGAGTTTGCTGTGGAGCTCAAACAAGATGCGG
TTTTGTTTGATGAGCTCGAAGAGGACGGAGTGCAAGTTAGGGCGTGCTCA
CGTGACGAGGCTGCCCGCAAGGCTACCATCCATCTCAGTGGCGCCAGCCT
AGACAAATCGGATTTTCAGAAAGGAACTGCATTTGTCATCGACGTGGATG
ACTGGGAAAAGAACTGTGCGCCAGTGCTGCCCGTGGAAGGAGTGGACGAG
GCTGACGATGCGCTGTTCTACGTCATCAGTGGCATGAGTGCCGATGGCGA
AAACGTGTTCTTGGACATGAACATTGTCTCCGGCTCGGAGATTGCCCCGA
CCGTTGACATTGACATTCGCGAAGAACCTGTGTTGGCAACGAAATTGCCC
AACAAAGTCCTCTTCAGTGACAGCCCTGCATTCGTCTCATCCGAACGCCT
GTTAGTTTCTGCCCGTTCAGTGATAGCGAACGACAGTCTGCCTGTCGTTG
CGCGCCCTAGTATTTCCGCGAGGAGCAAGGTAACGTTGTTCACCGGCGTC
GAGCTCGAAGTTGACGCATCACTCTCCGCAAACATCAACAGATTCAAAGT
CAAACGTCTGCTCAAGACAGAGGTGCAATGGGAGCAGAGTCTTGAAGCCC
AGCTTAACGCAGAGCTGACAGTGTCCGGAAAGATAGAAGCAGAAAGAAGT
GGTGAGATTTTTCGCAAGCCCATCCCCAAGTTCGGCTTCTCCACCAAAAT
CCCGTTCGTGGGCCGCATCCGGGCTGGGGCATTCGGAAAGGTCGATTGGA
TTGCGGAATTGGAGGTTGGTGCGGCGCTGCGAGCAAACATCCACGCTTCT
CATCGTACGAAGCAACGTGTGACAGCCAGAGTTATCCCTCCCAGGTTCAA
CTCCAGAAACCTTCTGCGGGCTGACGACGGTAGCTCTGGAAGGTCTACCT
TTACTTTTGAGAACGAGGCAGAAGCAAGCATCACTGGATTTATCGGGCTG
CGCCCGGCGATTGGAGTGGAGCTCACGCTTGGAAAGAAAGGGGTGGAAGG
AAACATTGGGGCCAAACTCGGCTTGGAAGCAGAAACGACCATTAAGAACC
CTCCGTTCAAACCGTTCACAGGAAGTGGACTGAAAGTGGGAAGGTGTGAC
CAGTGTCACAGGTTGAGGGGAGGGCTGAAAATCAAAGGAAAGGATCTTGG
TGTGCAGCTGCTGAAGAACGGTAAGGTGAGCAACGAGAAAATATTGATCG
AAGAGCTGTTCGAAATTCGTCTAGGCACGCTGTGTGCGATCACAGTGGCC
AGCTGTGAAGCCGACGGCTCCGCGCCATCCACCCCTAGCACATGCAAGAA
ATGTTCCACCACGAAGAAATGCAGCACAGGCTTCTCCTGCGTTCGAGGAG
TGTGCAAGCGGAGCCGCAAGCCTGGTCAGTCGTGCGGGGAGTGTGCTCGG
TGCATCTCGAGTTCTTGTGTTCTCGGGAAATGCAGGAGGACCTCTGGTCC
CCTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:207749..209453-

>Gchil1382.t1 ID=Gchil1382.t1|Name=Gchil1382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00004414_pilon:207749..209453- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTACCTGGCTCATTTTGCTTGTGTGGTTGGTAGGTTGTATTTGCCA
GGCTTCAGCTACCTCCAAGCTCCACCACGGCGCCTCTTCAAGCGGTTCTC
CTACAGTTCTCCGCGGACGCACTCTCATCGGCGCAGCATCGGGGAGTAGC
GAATTTGCAGGAAGCGCCTCCAAACCCTCCAATTTGCTAGCGCTTCAGGT
ACCGACTCAAAGAGTGCTCGAGTTTGCTGTGGAGCTCAAACAAGATGCGG
TTTTGTTTGATGAGCTCGAAGAGGACGGAGTGCAAGTTAGGGCGTGCTCA
CGTGACGAGGCTGCCCGCAAGGCTACCATCCATCTCAGTGGCGCCAGCCT
AGACAAATCGGATTTTCAGAAAGGAACTGCATTTGTCATCGACGTGGATG
ACTGGGAAAAGAACTGTGCGCCAGTGCTGCCCGTGGAAGGAGTGGACGAG
GCTGACGATGCGCTGTTCTACGTCATCAGTGGCATGAGTGCCGATGGCGA
AAACGTGTTCTTGGACATGAACATTGTCTCCGGCTCGGAGATTGCCCCGA
CCGTTGACATTGACATTCGCGAAGAACCTGTGTTGGCAACGAAATTGCCC
AACAAAGTCCTCTTCAGTGACAGCCCTGCATTCGTCTCATCCGAACGCCT
GTTAGTTTCTGCCCGTTCAGTGATAGCGAACGACAGTCTGCCTGTCGTTG
CGCGCCCTAGTATTTCCGCGAGGAGCAAGGTAACGTTGTTCACCGGCGTC
GAGCTCGAAGTTGACGCATCACTCTCCGCAAACATCAACAGATTCAAAGT
CAAACGTCTGCTCAAGACAGAGGTGCAATGGGAGCAGAGTCTTGAAGCCC
AGCTTAACGCAGAGCTGACAGTGTCCGGAAAGATAGAAGCAGAAAGAAGT
GGTGAGATTTTTCGCAAGCCCATCCCCAAGTTCGGCTTCTCCACCAAAAT
CCCGTTCGTGGGCCGCATCCGGGCTGGGGCATTCGGAAAGGTCGATTGGA
TTGCGGAATTGGAGGTTGGTGCGGCGCTGCGAGCAAACATCCACGCTTCT
CATCGTACGAAGCAACGTGTGACAGCCAGAGTTATCCCTCCCAGGTTCAA
CTCCAGAAACCTTCTGCGGGCTGACGACGGTAGCTCTGGAAGGTCTACCT
TTACTTTTGAGAACGAGGCAGAAGCAAGCATCACTGGATTTATCGGGCTG
CGCCCGGCGATTGGAGTGGAGCTCACGCTTGGAAAGAAAGGGGTGGAAGG
AAACATTGGGGCCAAACTCGGCTTGGAAGCAGAAACGACCATTAAGAACC
CTCCGTTCAAACCGTTCACAGGAAGTGGACTGAAAGTGGGAAGGTGTGAC
CAGTGTCACAGGTTGAGGGGAGGGCTGAAAATCAAAGGAAAGGATCTTGG
TGTGCAGCTGCTGAAGAACGCTGTGAAGCCGACGGCTCCGCGCCATCCAC
CCCTAGCACATGCAAGAAATGTTCCACCACGAAGAAATGCAGCACAGGCT
TCTCCTGCGTTCGAGGAGTGTGCAAGCGGAGCCGCAAGCCTGGTCAGTCG
TGCGGGGAGTGTGCTCGGTGCATCTCGAGTTCTTGTGTTCTCGGGAAATG
CAGGAGGACCTCTGGTCCCCTGA
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