Gchil1381.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1381.t1
Unique Name	Gchil1381.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004414_pilon	contig	tig00004414_pilon:201732..203099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1381	Gchil1381	Gracilaria chilensis NLEC103_M9 male	gene	tig00004414_pilon 201732..203099 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1381.t1.start1	Gchil1381.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004414_pilon 201732..201734 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1381.t1.CDS1	Gchil1381.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004414_pilon 201732..203099 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1381.t1.exon1	Gchil1381.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004414_pilon 201732..203099 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1381.t1.stop1	Gchil1381.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004414_pilon 203097..203099 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1381.t1	Gchil1381.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004414_pilon 201732..203099 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004414_pilon:201732..203099+
coding sequence from alignment at tig00004414_pilon:201732..203099+

mRNA sequence

>Gchil1381.t1 ID=Gchil1381.t1|Name=Gchil1381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MEFKTCIIIAVSSVMMYSAMALVHNTGKEFFRETILTEDGLAIQQISVPT
FLVPTVSFMELQANGTTLKSCTPTTLQFSGAIDQKDFAVGHVLTFPDDGN
LNPGCRFTMDKSESQLIARDEIIFRNITNFSFQAGSVLLTTVFVSGENVV
PVVEVSIMGPMLPDDLESLEKKVELEIQRNGTIPIVENVNLMWGVTVSSG
TNNFAFSRTKLRVSWDQQISASASVNLQVLAAFNTTRSGNILSFPLPGSF
AFRIPFLGKISSGLFGKVDYEADLAVMAQADMGIFSSVSAAQRVTIGLQA
FKFERLPLSTDPNGAGLNFHTTDATQANATGFIGIRPAVQAELSLPFLGQ
LSVDFGGTMGISATVAYMSVPFPPFTDGRPIGVGCDGLHHVRGLLKLEGR
KLGNRVMIPRKAPMEFVLLDPFIDYIVGTKCLFPASSVSNEQLLLQKFSS
DALSE*

spliced messenger RNA

>Gchil1381.t1 ID=Gchil1381.t1|Name=Gchil1381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004414_pilon:201732..203099+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCAAGACTTGCATTATTATTGCCGTGTCATCCGTTATGATGTA
TTCTGCAATGGCTCTGGTCCATAATACTGGAAAGGAGTTCTTTCGTGAGA
CGATACTAACAGAAGATGGCCTCGCTATACAACAGATATCTGTTCCAACA
TTCCTGGTCCCAACAGTTTCGTTTATGGAGTTGCAAGCCAACGGAACAAC
TTTGAAATCCTGCACCCCCACAACTCTCCAATTTTCTGGAGCTATTGATC
AGAAAGACTTCGCTGTTGGTCATGTTCTTACATTTCCAGACGATGGAAAC
CTGAACCCGGGATGCCGATTTACGATGGACAAGAGCGAAAGCCAATTGAT
CGCTCGCGATGAGATAATATTTCGCAACATTACGAACTTTTCATTTCAGG
CCGGGTCAGTGCTATTAACCACTGTCTTCGTATCTGGAGAAAACGTAGTG
CCAGTTGTTGAAGTGAGTATTATGGGTCCTATGCTTCCAGATGATCTTGA
ATCACTTGAAAAAAAAGTTGAACTCGAAATTCAGCGCAACGGAACAATAC
CAATCGTCGAAAATGTGAATCTTATGTGGGGAGTTACAGTATCAAGTGGC
ACAAACAATTTCGCATTCAGTCGCACTAAGCTTAGAGTTTCATGGGACCA
ACAAATTTCAGCTTCGGCATCTGTCAATCTTCAGGTTTTGGCTGCTTTTA
ATACCACTCGTTCAGGAAATATCTTAAGCTTCCCACTTCCCGGCAGTTTC
GCTTTTCGAATCCCATTTCTTGGGAAAATATCTTCTGGACTGTTCGGAAA
GGTAGATTATGAGGCTGATCTGGCTGTTATGGCGCAAGCAGACATGGGAA
TATTTTCATCTGTTTCGGCCGCCCAAAGAGTAACAATTGGTCTTCAAGCG
TTCAAGTTCGAACGCCTACCGCTTTCTACCGATCCGAACGGAGCGGGACT
GAACTTTCATACCACAGATGCCACACAAGCTAATGCCACCGGCTTTATTG
GAATTAGGCCAGCAGTACAAGCAGAATTAAGTCTCCCATTTCTCGGGCAA
CTGTCTGTTGACTTTGGAGGAACAATGGGAATCTCAGCCACAGTAGCGTA
CATGTCGGTACCGTTCCCCCCATTTACAGATGGTCGCCCTATTGGTGTAG
GGTGTGATGGACTGCACCACGTAAGAGGGCTGCTAAAACTGGAAGGTCGA
AAACTTGGCAATCGAGTCATGATACCAAGGAAAGCTCCGATGGAATTTGT
TTTATTAGATCCCTTCATTGACTACATCGTTGGGACGAAGTGCCTATTTC
CTGCTTCGAGTGTTTCGAATGAACAACTTCTCCTGCAAAAATTTAGCAGT
GATGCATTGTCAGAGTAG

protein sequence of Gchil1381.t1

>Gchil1381.t1 ID=Gchil1381.t1|Name=Gchil1381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MEFKTCIIIAVSSVMMYSAMALVHNTGKEFFRETILTEDGLAIQQISVPT
FLVPTVSFMELQANGTTLKSCTPTTLQFSGAIDQKDFAVGHVLTFPDDGN
LNPGCRFTMDKSESQLIARDEIIFRNITNFSFQAGSVLLTTVFVSGENVV
PVVEVSIMGPMLPDDLESLEKKVELEIQRNGTIPIVENVNLMWGVTVSSG
TNNFAFSRTKLRVSWDQQISASASVNLQVLAAFNTTRSGNILSFPLPGSF
AFRIPFLGKISSGLFGKVDYEADLAVMAQADMGIFSSVSAAQRVTIGLQA
FKFERLPLSTDPNGAGLNFHTTDATQANATGFIGIRPAVQAELSLPFLGQ
LSVDFGGTMGISATVAYMSVPFPPFTDGRPIGVGCDGLHHVRGLLKLEGR
KLGNRVMIPRKAPMEFVLLDPFIDYIVGTKCLFPASSVSNEQLLLQKFSS
DALSE*

mRNA from alignment at tig00004414_pilon:201732..203099+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1381.t1 ID=Gchil1381.t1|Name=Gchil1381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004414_pilon:201732..203099+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTTCAAGACTTGCATTATTATTGCCGTGTCATCCGTTATGATGTA
TTCTGCAATGGCTCTGGTCCATAATACTGGAAAGGAGTTCTTTCGTGAGA
CGATACTAACAGAAGATGGCCTCGCTATACAACAGATATCTGTTCCAACA
TTCCTGGTCCCAACAGTTTCGTTTATGGAGTTGCAAGCCAACGGAACAAC
TTTGAAATCCTGCACCCCCACAACTCTCCAATTTTCTGGAGCTATTGATC
AGAAAGACTTCGCTGTTGGTCATGTTCTTACATTTCCAGACGATGGAAAC
CTGAACCCGGGATGCCGATTTACGATGGACAAGAGCGAAAGCCAATTGAT
CGCTCGCGATGAGATAATATTTCGCAACATTACGAACTTTTCATTTCAGG
CCGGGTCAGTGCTATTAACCACTGTCTTCGTATCTGGAGAAAACGTAGTG
CCAGTTGTTGAAGTGAGTATTATGGGTCCTATGCTTCCAGATGATCTTGA
ATCACTTGAAAAAAAAGTTGAACTCGAAATTCAGCGCAACGGAACAATAC
CAATCGTCGAAAATGTGAATCTTATGTGGGGAGTTACAGTATCAAGTGGC
ACAAACAATTTCGCATTCAGTCGCACTAAGCTTAGAGTTTCATGGGACCA
ACAAATTTCAGCTTCGGCATCTGTCAATCTTCAGGTTTTGGCTGCTTTTA
ATACCACTCGTTCAGGAAATATCTTAAGCTTCCCACTTCCCGGCAGTTTC
GCTTTTCGAATCCCATTTCTTGGGAAAATATCTTCTGGACTGTTCGGAAA
GGTAGATTATGAGGCTGATCTGGCTGTTATGGCGCAAGCAGACATGGGAA
TATTTTCATCTGTTTCGGCCGCCCAAAGAGTAACAATTGGTCTTCAAGCG
TTCAAGTTCGAACGCCTACCGCTTTCTACCGATCCGAACGGAGCGGGACT
GAACTTTCATACCACAGATGCCACACAAGCTAATGCCACCGGCTTTATTG
GAATTAGGCCAGCAGTACAAGCAGAATTAAGTCTCCCATTTCTCGGGCAA
CTGTCTGTTGACTTTGGAGGAACAATGGGAATCTCAGCCACAGTAGCGTA
CATGTCGGTACCGTTCCCCCCATTTACAGATGGTCGCCCTATTGGTGTAG
GGTGTGATGGACTGCACCACGTAAGAGGGCTGCTAAAACTGGAAGGTCGA
AAACTTGGCAATCGAGTCATGATACCAAGGAAAGCTCCGATGGAATTTGT
TTTATTAGATCCCTTCATTGACTACATCGTTGGGACGAAGTGCCTATTTC
CTGCTTCGAGTGTTTCGAATGAACAACTTCTCCTGCAAAAATTTAGCAGT
GATGCATTGTCAGAGTAG

Coding sequence (CDS) from alignment at tig00004414_pilon:201732..203099+

>Gchil1381.t1 ID=Gchil1381.t1|Name=Gchil1381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004414_pilon:201732..203099+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTTCAAGACTTGCATTATTATTGCCGTGTCATCCGTTATGATGTA
TTCTGCAATGGCTCTGGTCCATAATACTGGAAAGGAGTTCTTTCGTGAGA
CGATACTAACAGAAGATGGCCTCGCTATACAACAGATATCTGTTCCAACA
TTCCTGGTCCCAACAGTTTCGTTTATGGAGTTGCAAGCCAACGGAACAAC
TTTGAAATCCTGCACCCCCACAACTCTCCAATTTTCTGGAGCTATTGATC
AGAAAGACTTCGCTGTTGGTCATGTTCTTACATTTCCAGACGATGGAAAC
CTGAACCCGGGATGCCGATTTACGATGGACAAGAGCGAAAGCCAATTGAT
CGCTCGCGATGAGATAATATTTCGCAACATTACGAACTTTTCATTTCAGG
CCGGGTCAGTGCTATTAACCACTGTCTTCGTATCTGGAGAAAACGTAGTG
CCAGTTGTTGAAGTGAGTATTATGGGTCCTATGCTTCCAGATGATCTTGA
ATCACTTGAAAAAAAAGTTGAACTCGAAATTCAGCGCAACGGAACAATAC
CAATCGTCGAAAATGTGAATCTTATGTGGGGAGTTACAGTATCAAGTGGC
ACAAACAATTTCGCATTCAGTCGCACTAAGCTTAGAGTTTCATGGGACCA
ACAAATTTCAGCTTCGGCATCTGTCAATCTTCAGGTTTTGGCTGCTTTTA
ATACCACTCGTTCAGGAAATATCTTAAGCTTCCCACTTCCCGGCAGTTTC
GCTTTTCGAATCCCATTTCTTGGGAAAATATCTTCTGGACTGTTCGGAAA
GGTAGATTATGAGGCTGATCTGGCTGTTATGGCGCAAGCAGACATGGGAA
TATTTTCATCTGTTTCGGCCGCCCAAAGAGTAACAATTGGTCTTCAAGCG
TTCAAGTTCGAACGCCTACCGCTTTCTACCGATCCGAACGGAGCGGGACT
GAACTTTCATACCACAGATGCCACACAAGCTAATGCCACCGGCTTTATTG
GAATTAGGCCAGCAGTACAAGCAGAATTAAGTCTCCCATTTCTCGGGCAA
CTGTCTGTTGACTTTGGAGGAACAATGGGAATCTCAGCCACAGTAGCGTA
CATGTCGGTACCGTTCCCCCCATTTACAGATGGTCGCCCTATTGGTGTAG
GGTGTGATGGACTGCACCACGTAAGAGGGCTGCTAAAACTGGAAGGTCGA
AAACTTGGCAATCGAGTCATGATACCAAGGAAAGCTCCGATGGAATTTGT
TTTATTAGATCCCTTCATTGACTACATCGTTGGGACGAAGTGCCTATTTC
CTGCTTCGAGTGTTTCGAATGAACAACTTCTCCTGCAAAAATTTAGCAGT
GATGCATTGTCAGAGTAG