Gchil1379.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1379.t1
Unique NameGchil1379.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:115134..116510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1379Gchil1379Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 115134..116510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1379.t1.stop1Gchil1379.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 115134..115136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1379.t1.CDS1Gchil1379.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 115134..116510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1379.t1.exon1Gchil1379.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 115134..116510 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1379.t1.start1Gchil1379.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 116508..116510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1379.t1Gchil1379.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 115134..116510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1379.t1 ID=Gchil1379.t1|Name=Gchil1379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp
MEDGKDWFGECNVVSCSLETQSCEPESSTSETKFFHNGGLFYCPPDGEYD
YITWSFDCQESVLLLPTTAEHRTIEGVDETSVYDMGLDLFRLGIRSTSRE
EIAIMIEPNAFFPPSTSELVPLYKGADEQLKSFLECNGEQLKPQARDGDG
NRLNLTLEGPLPRFDDTIVDSCWENNSTCTDGFACAKCNEDKSVDLVRLV
GYDNTTNRLIEGPISRTKRGSNCPIDPSIVYDDDYAYVYQGFKVNGFSDG
RADIMDFKSHGESLLKNSEKIFSCRSSSTNVAPMETSKAEPPAGVEIAVV
EDAESITNEDNTPVTAPTGASQQSNSSSPTEGSPEGEEVCLEVDWLRSIG
VKDEQMLHKKSILTTVLCAGGGIPCGTADHLLLKDGALISFDTLCRREEC
EKRSALVNSANHLLLMRAPIHYEGLSVTGCSGKRGSWQRWIEEVVVRRVY
MAHRAWNI*
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spliced messenger RNA

>Gchil1379.t1 ID=Gchil1379.t1|Name=Gchil1379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004414_pilon:115134..116510- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACGGCAAAGATTGGTTTGGAGAATGCAATGTAGTTTCCTGTTC
GCTGGAGACGCAAAGTTGTGAACCGGAGTCTTCCACCAGTGAAACAAAAT
TCTTTCACAATGGGGGTCTATTCTACTGTCCTCCAGACGGGGAGTATGAC
TACATCACATGGTCATTTGACTGCCAGGAAAGCGTGTTGTTGTTGCCCAC
TACAGCTGAACATCGAACAATAGAAGGTGTTGACGAAACGAGTGTTTATG
ACATGGGCCTTGACCTTTTTCGATTAGGAATTCGTTCCACCTCAAGAGAG
GAAATTGCCATAATGATTGAACCCAATGCATTTTTTCCCCCTTCAACTTC
GGAATTAGTACCTCTGTACAAGGGTGCGGATGAACAACTCAAATCGTTTC
TGGAATGCAATGGAGAACAGTTGAAGCCACAAGCGCGTGATGGAGATGGA
AATCGGTTGAATCTCACACTAGAAGGACCTCTTCCTCGCTTTGATGATAC
CATTGTTGATTCATGTTGGGAGAACAATTCGACTTGCACTGATGGTTTTG
CATGCGCAAAATGCAATGAGGATAAATCGGTTGACCTGGTAAGGCTTGTT
GGATACGATAATACCACCAACAGACTAATCGAGGGACCCATTTCCAGAAC
TAAGCGCGGCTCGAACTGTCCTATTGATCCCTCTATAGTGTATGATGATG
ACTATGCGTATGTATATCAAGGTTTTAAAGTGAATGGCTTTTCTGATGGG
CGGGCAGATATTATGGATTTCAAGTCTCATGGAGAAAGTTTGCTTAAAAA
CAGCGAGAAAATATTCTCGTGTCGTTCGTCGTCCACGAATGTTGCTCCGA
TGGAGACCTCGAAAGCCGAGCCCCCTGCCGGTGTGGAGATAGCTGTCGTT
GAGGACGCCGAATCTATTACAAACGAGGACAATACACCAGTGACAGCACC
CACTGGTGCGTCCCAACAAAGCAACTCCTCTTCACCGACTGAGGGCTCGC
CCGAAGGAGAAGAGGTTTGTCTGGAGGTGGATTGGCTGCGCTCCATCGGC
GTGAAAGACGAGCAAATGCTGCATAAGAAAAGCATTCTGACAACAGTTCT
TTGTGCCGGCGGGGGCATTCCGTGTGGCACAGCGGATCATCTGCTTCTTA
AGGACGGGGCTCTGATTAGTTTCGACACTCTCTGCAGACGCGAGGAATGT
GAAAAGAGGAGCGCTTTGGTGAACAGTGCGAATCATTTGCTGCTGATGCG
GGCGCCAATTCACTATGAGGGCTTGAGCGTGACGGGATGCAGCGGAAAGC
GCGGTTCGTGGCAGAGATGGATAGAAGAGGTTGTTGTGCGTCGCGTGTAC
ATGGCGCACAGAGCATGGAACATATAA
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protein sequence of Gchil1379.t1

>Gchil1379.t1 ID=Gchil1379.t1|Name=Gchil1379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=459bp
MEDGKDWFGECNVVSCSLETQSCEPESSTSETKFFHNGGLFYCPPDGEYD
YITWSFDCQESVLLLPTTAEHRTIEGVDETSVYDMGLDLFRLGIRSTSRE
EIAIMIEPNAFFPPSTSELVPLYKGADEQLKSFLECNGEQLKPQARDGDG
NRLNLTLEGPLPRFDDTIVDSCWENNSTCTDGFACAKCNEDKSVDLVRLV
GYDNTTNRLIEGPISRTKRGSNCPIDPSIVYDDDYAYVYQGFKVNGFSDG
RADIMDFKSHGESLLKNSEKIFSCRSSSTNVAPMETSKAEPPAGVEIAVV
EDAESITNEDNTPVTAPTGASQQSNSSSPTEGSPEGEEVCLEVDWLRSIG
VKDEQMLHKKSILTTVLCAGGGIPCGTADHLLLKDGALISFDTLCRREEC
EKRSALVNSANHLLLMRAPIHYEGLSVTGCSGKRGSWQRWIEEVVVRRVY
MAHRAWNI*
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mRNA from alignment at tig00004414_pilon:115134..116510-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1379.t1 ID=Gchil1379.t1|Name=Gchil1379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004414_pilon:115134..116510- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACGGCAAAGATTGGTTTGGAGAATGCAATGTAGTTTCCTGTTC
GCTGGAGACGCAAAGTTGTGAACCGGAGTCTTCCACCAGTGAAACAAAAT
TCTTTCACAATGGGGGTCTATTCTACTGTCCTCCAGACGGGGAGTATGAC
TACATCACATGGTCATTTGACTGCCAGGAAAGCGTGTTGTTGTTGCCCAC
TACAGCTGAACATCGAACAATAGAAGGTGTTGACGAAACGAGTGTTTATG
ACATGGGCCTTGACCTTTTTCGATTAGGAATTCGTTCCACCTCAAGAGAG
GAAATTGCCATAATGATTGAACCCAATGCATTTTTTCCCCCTTCAACTTC
GGAATTAGTACCTCTGTACAAGGGTGCGGATGAACAACTCAAATCGTTTC
TGGAATGCAATGGAGAACAGTTGAAGCCACAAGCGCGTGATGGAGATGGA
AATCGGTTGAATCTCACACTAGAAGGACCTCTTCCTCGCTTTGATGATAC
CATTGTTGATTCATGTTGGGAGAACAATTCGACTTGCACTGATGGTTTTG
CATGCGCAAAATGCAATGAGGATAAATCGGTTGACCTGGTAAGGCTTGTT
GGATACGATAATACCACCAACAGACTAATCGAGGGACCCATTTCCAGAAC
TAAGCGCGGCTCGAACTGTCCTATTGATCCCTCTATAGTGTATGATGATG
ACTATGCGTATGTATATCAAGGTTTTAAAGTGAATGGCTTTTCTGATGGG
CGGGCAGATATTATGGATTTCAAGTCTCATGGAGAAAGTTTGCTTAAAAA
CAGCGAGAAAATATTCTCGTGTCGTTCGTCGTCCACGAATGTTGCTCCGA
TGGAGACCTCGAAAGCCGAGCCCCCTGCCGGTGTGGAGATAGCTGTCGTT
GAGGACGCCGAATCTATTACAAACGAGGACAATACACCAGTGACAGCACC
CACTGGTGCGTCCCAACAAAGCAACTCCTCTTCACCGACTGAGGGCTCGC
CCGAAGGAGAAGAGGTTTGTCTGGAGGTGGATTGGCTGCGCTCCATCGGC
GTGAAAGACGAGCAAATGCTGCATAAGAAAAGCATTCTGACAACAGTTCT
TTGTGCCGGCGGGGGCATTCCGTGTGGCACAGCGGATCATCTGCTTCTTA
AGGACGGGGCTCTGATTAGTTTCGACACTCTCTGCAGACGCGAGGAATGT
GAAAAGAGGAGCGCTTTGGTGAACAGTGCGAATCATTTGCTGCTGATGCG
GGCGCCAATTCACTATGAGGGCTTGAGCGTGACGGGATGCAGCGGAAAGC
GCGGTTCGTGGCAGAGATGGATAGAAGAGGTTGTTGTGCGTCGCGTGTAC
ATGGCGCACAGAGCATGGAACATATAA
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Coding sequence (CDS) from alignment at tig00004414_pilon:115134..116510-

>Gchil1379.t1 ID=Gchil1379.t1|Name=Gchil1379.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00004414_pilon:115134..116510- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACGGCAAAGATTGGTTTGGAGAATGCAATGTAGTTTCCTGTTC
GCTGGAGACGCAAAGTTGTGAACCGGAGTCTTCCACCAGTGAAACAAAAT
TCTTTCACAATGGGGGTCTATTCTACTGTCCTCCAGACGGGGAGTATGAC
TACATCACATGGTCATTTGACTGCCAGGAAAGCGTGTTGTTGTTGCCCAC
TACAGCTGAACATCGAACAATAGAAGGTGTTGACGAAACGAGTGTTTATG
ACATGGGCCTTGACCTTTTTCGATTAGGAATTCGTTCCACCTCAAGAGAG
GAAATTGCCATAATGATTGAACCCAATGCATTTTTTCCCCCTTCAACTTC
GGAATTAGTACCTCTGTACAAGGGTGCGGATGAACAACTCAAATCGTTTC
TGGAATGCAATGGAGAACAGTTGAAGCCACAAGCGCGTGATGGAGATGGA
AATCGGTTGAATCTCACACTAGAAGGACCTCTTCCTCGCTTTGATGATAC
CATTGTTGATTCATGTTGGGAGAACAATTCGACTTGCACTGATGGTTTTG
CATGCGCAAAATGCAATGAGGATAAATCGGTTGACCTGGTAAGGCTTGTT
GGATACGATAATACCACCAACAGACTAATCGAGGGACCCATTTCCAGAAC
TAAGCGCGGCTCGAACTGTCCTATTGATCCCTCTATAGTGTATGATGATG
ACTATGCGTATGTATATCAAGGTTTTAAAGTGAATGGCTTTTCTGATGGG
CGGGCAGATATTATGGATTTCAAGTCTCATGGAGAAAGTTTGCTTAAAAA
CAGCGAGAAAATATTCTCGTGTCGTTCGTCGTCCACGAATGTTGCTCCGA
TGGAGACCTCGAAAGCCGAGCCCCCTGCCGGTGTGGAGATAGCTGTCGTT
GAGGACGCCGAATCTATTACAAACGAGGACAATACACCAGTGACAGCACC
CACTGGTGCGTCCCAACAAAGCAACTCCTCTTCACCGACTGAGGGCTCGC
CCGAAGGAGAAGAGGTTTGTCTGGAGGTGGATTGGCTGCGCTCCATCGGC
GTGAAAGACGAGCAAATGCTGCATAAGAAAAGCATTCTGACAACAGTTCT
TTGTGCCGGCGGGGGCATTCCGTGTGGCACAGCGGATCATCTGCTTCTTA
AGGACGGGGCTCTGATTAGTTTCGACACTCTCTGCAGACGCGAGGAATGT
GAAAAGAGGAGCGCTTTGGTGAACAGTGCGAATCATTTGCTGCTGATGCG
GGCGCCAATTCACTATGAGGGCTTGAGCGTGACGGGATGCAGCGGAAAGC
GCGGTTCGTGGCAGAGATGGATAGAAGAGGTTGTTGTGCGTCGCGTGTAC
ATGGCGCACAGAGCATGGAACATATAA
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