Gchil1358.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1358.t1
Unique NameGchil1358.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:929239..930714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706126.1
PFAMsAmino_oxidase
Max annot lvl2759|Eukaryota
KEGG rclassRC00053,RC00225
KEGG koko:K00308,ko:K12259
KEGG ReactionR03899,R09074,R09076
KEGG Pathwayko00330,ko00410,ko04146,map00330,map00410,map04146
Evalue3.68e-50
EggNOG OGsKOG0685@1|root,KOG0685@2759|Eukaryota
EC1.5.3.13,1.5.3.16
Descriptionpositive regulation of spermidine biosynthetic process
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1358Gchil1358Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 929239..930714 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1358.t1.start1Gchil1358.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 929239..929241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1358.t1.CDS1Gchil1358.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 929239..930714 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1358.t1.exon1Gchil1358.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 929239..930714 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1358.t1.stop1Gchil1358.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 930712..930714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1358.t1Gchil1358.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 929239..930714 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1358.t1 ID=Gchil1358.t1|Name=Gchil1358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp
MAPSVAIIGAGLSGLSAAAHLRRRHAITATIFESLPRAGGRVHSIKVELP
ASRQSLVIDLGATWCHGTRGNSAYDLAVESGVVSDPRHAEDSPDHRDEDD
GVWLFSAPAVVVSHGVARTVGSESLLPVVRAYGASLRKNESDSVRRCEEE
RDDEGVQWFLRRSTGFDDMSPLDRAVFRARDAFEACVNGCDSSTADLSLK
RLSDYVTLKGDNVMLDGGMGEVVDTFVQQLQVSQLMLGRRVVRVAYGDEN
GGGVRITFEDGSVWSGDCIIWTPSINVTKRAVVEGVFEPRLPDEKVAAMN
ERVQGFVEKVFVFLNEALKNVTSDCSMPIIWEDSKAIPQSQQWFTNVFSV
LYSSKHNVVSFWLTGEAAKHVCSLANDLQSEQVALLLTILYSQPITVGMV
ICSEWSLNQSTLGSYSYAKVRCTKDAVQTLAKPLPSADKPLVCFAGEATH
QSFYSTMHGAIESGYREADRVAAFLSQQPLRISKSENRIVS*
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spliced messenger RNA

>Gchil1358.t1 ID=Gchil1358.t1|Name=Gchil1358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004433_pilon:929239..930714+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGAGCGTAGCCATCATCGGGGCTGGACTGTCTGGTTTGTCCGC
CGCCGCCCACCTCCGCCGTCGTCATGCCATCACCGCCACCATCTTTGAGT
CGCTACCGCGAGCTGGAGGCCGCGTCCATTCCATCAAGGTCGAGCTGCCG
GCAAGCCGACAGTCGCTCGTGATCGACCTGGGTGCCACCTGGTGCCATGG
CACACGCGGAAATTCCGCTTACGATCTCGCCGTAGAAAGCGGCGTCGTGT
CGGATCCACGCCACGCCGAGGACAGCCCAGACCATAGGGATGAAGATGAT
GGTGTGTGGCTCTTCTCCGCTCCAGCTGTGGTCGTGAGCCATGGCGTGGC
TCGAACCGTGGGTTCTGAGAGTCTTCTGCCGGTAGTTCGGGCGTATGGCG
CCTCCCTGCGGAAGAATGAAAGCGACAGTGTGCGACGATGCGAGGAGGAA
CGTGACGACGAGGGCGTCCAGTGGTTCTTGAGGAGATCAACGGGCTTCGA
CGATATGAGCCCGCTGGATCGCGCTGTGTTTCGGGCACGGGATGCGTTTG
AGGCTTGCGTCAATGGCTGTGATTCTTCTACGGCAGATTTGTCGTTGAAG
CGCTTATCAGATTATGTGACCTTGAAAGGTGATAACGTGATGCTTGATGG
GGGAATGGGAGAGGTTGTCGACACATTTGTTCAGCAATTGCAAGTGTCCC
AGCTTATGCTCGGCCGAAGGGTTGTACGCGTAGCTTACGGCGATGAAAAC
GGCGGAGGCGTGCGAATCACATTCGAAGATGGCTCCGTCTGGTCAGGAGA
CTGCATCATATGGACCCCTTCGATCAATGTGACAAAAAGAGCGGTGGTGG
AAGGCGTCTTCGAACCACGCCTACCAGACGAGAAGGTTGCCGCGATGAAC
GAGAGAGTCCAGGGCTTCGTTGAGAAGGTCTTCGTTTTCTTAAATGAAGC
ACTCAAGAACGTGACGTCCGACTGCAGCATGCCTATCATTTGGGAGGACT
CAAAAGCCATTCCACAATCTCAACAATGGTTCACGAATGTGTTTTCCGTG
CTTTACAGTTCGAAGCATAATGTAGTTTCATTTTGGCTCACTGGCGAGGC
TGCGAAGCATGTGTGTTCCCTCGCGAATGATCTTCAATCGGAACAAGTTG
CTTTGTTGTTGACGATCTTGTATTCCCAACCAATTACGGTTGGTATGGTG
ATCTGCTCCGAATGGAGCTTGAACCAGTCTACGCTAGGAAGTTATTCGTA
TGCGAAGGTACGATGCACAAAGGACGCCGTGCAAACACTTGCCAAACCCC
TTCCGTCAGCCGATAAACCTCTCGTTTGCTTTGCCGGGGAGGCCACGCAC
CAGAGCTTTTATTCCACTATGCACGGTGCGATTGAGTCCGGGTATCGAGA
GGCCGATCGGGTTGCTGCGTTCTTGAGTCAGCAGCCCCTTCGCATTTCGA
AGTCAGAAAATCGAATTGTCAGCTAG
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protein sequence of Gchil1358.t1

>Gchil1358.t1 ID=Gchil1358.t1|Name=Gchil1358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MAPSVAIIGAGLSGLSAAAHLRRRHAITATIFESLPRAGGRVHSIKVELP
ASRQSLVIDLGATWCHGTRGNSAYDLAVESGVVSDPRHAEDSPDHRDEDD
GVWLFSAPAVVVSHGVARTVGSESLLPVVRAYGASLRKNESDSVRRCEEE
RDDEGVQWFLRRSTGFDDMSPLDRAVFRARDAFEACVNGCDSSTADLSLK
RLSDYVTLKGDNVMLDGGMGEVVDTFVQQLQVSQLMLGRRVVRVAYGDEN
GGGVRITFEDGSVWSGDCIIWTPSINVTKRAVVEGVFEPRLPDEKVAAMN
ERVQGFVEKVFVFLNEALKNVTSDCSMPIIWEDSKAIPQSQQWFTNVFSV
LYSSKHNVVSFWLTGEAAKHVCSLANDLQSEQVALLLTILYSQPITVGMV
ICSEWSLNQSTLGSYSYAKVRCTKDAVQTLAKPLPSADKPLVCFAGEATH
QSFYSTMHGAIESGYREADRVAAFLSQQPLRISKSENRIVS*
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mRNA from alignment at tig00004433_pilon:929239..930714+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1358.t1 ID=Gchil1358.t1|Name=Gchil1358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004433_pilon:929239..930714+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGAGCGTAGCCATCATCGGGGCTGGACTGTCTGGTTTGTCCGC
CGCCGCCCACCTCCGCCGTCGTCATGCCATCACCGCCACCATCTTTGAGT
CGCTACCGCGAGCTGGAGGCCGCGTCCATTCCATCAAGGTCGAGCTGCCG
GCAAGCCGACAGTCGCTCGTGATCGACCTGGGTGCCACCTGGTGCCATGG
CACACGCGGAAATTCCGCTTACGATCTCGCCGTAGAAAGCGGCGTCGTGT
CGGATCCACGCCACGCCGAGGACAGCCCAGACCATAGGGATGAAGATGAT
GGTGTGTGGCTCTTCTCCGCTCCAGCTGTGGTCGTGAGCCATGGCGTGGC
TCGAACCGTGGGTTCTGAGAGTCTTCTGCCGGTAGTTCGGGCGTATGGCG
CCTCCCTGCGGAAGAATGAAAGCGACAGTGTGCGACGATGCGAGGAGGAA
CGTGACGACGAGGGCGTCCAGTGGTTCTTGAGGAGATCAACGGGCTTCGA
CGATATGAGCCCGCTGGATCGCGCTGTGTTTCGGGCACGGGATGCGTTTG
AGGCTTGCGTCAATGGCTGTGATTCTTCTACGGCAGATTTGTCGTTGAAG
CGCTTATCAGATTATGTGACCTTGAAAGGTGATAACGTGATGCTTGATGG
GGGAATGGGAGAGGTTGTCGACACATTTGTTCAGCAATTGCAAGTGTCCC
AGCTTATGCTCGGCCGAAGGGTTGTACGCGTAGCTTACGGCGATGAAAAC
GGCGGAGGCGTGCGAATCACATTCGAAGATGGCTCCGTCTGGTCAGGAGA
CTGCATCATATGGACCCCTTCGATCAATGTGACAAAAAGAGCGGTGGTGG
AAGGCGTCTTCGAACCACGCCTACCAGACGAGAAGGTTGCCGCGATGAAC
GAGAGAGTCCAGGGCTTCGTTGAGAAGGTCTTCGTTTTCTTAAATGAAGC
ACTCAAGAACGTGACGTCCGACTGCAGCATGCCTATCATTTGGGAGGACT
CAAAAGCCATTCCACAATCTCAACAATGGTTCACGAATGTGTTTTCCGTG
CTTTACAGTTCGAAGCATAATGTAGTTTCATTTTGGCTCACTGGCGAGGC
TGCGAAGCATGTGTGTTCCCTCGCGAATGATCTTCAATCGGAACAAGTTG
CTTTGTTGTTGACGATCTTGTATTCCCAACCAATTACGGTTGGTATGGTG
ATCTGCTCCGAATGGAGCTTGAACCAGTCTACGCTAGGAAGTTATTCGTA
TGCGAAGGTACGATGCACAAAGGACGCCGTGCAAACACTTGCCAAACCCC
TTCCGTCAGCCGATAAACCTCTCGTTTGCTTTGCCGGGGAGGCCACGCAC
CAGAGCTTTTATTCCACTATGCACGGTGCGATTGAGTCCGGGTATCGAGA
GGCCGATCGGGTTGCTGCGTTCTTGAGTCAGCAGCCCCTTCGCATTTCGA
AGTCAGAAAATCGAATTGTCAGCTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:929239..930714+

>Gchil1358.t1 ID=Gchil1358.t1|Name=Gchil1358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00004433_pilon:929239..930714+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGAGCGTAGCCATCATCGGGGCTGGACTGTCTGGTTTGTCCGC
CGCCGCCCACCTCCGCCGTCGTCATGCCATCACCGCCACCATCTTTGAGT
CGCTACCGCGAGCTGGAGGCCGCGTCCATTCCATCAAGGTCGAGCTGCCG
GCAAGCCGACAGTCGCTCGTGATCGACCTGGGTGCCACCTGGTGCCATGG
CACACGCGGAAATTCCGCTTACGATCTCGCCGTAGAAAGCGGCGTCGTGT
CGGATCCACGCCACGCCGAGGACAGCCCAGACCATAGGGATGAAGATGAT
GGTGTGTGGCTCTTCTCCGCTCCAGCTGTGGTCGTGAGCCATGGCGTGGC
TCGAACCGTGGGTTCTGAGAGTCTTCTGCCGGTAGTTCGGGCGTATGGCG
CCTCCCTGCGGAAGAATGAAAGCGACAGTGTGCGACGATGCGAGGAGGAA
CGTGACGACGAGGGCGTCCAGTGGTTCTTGAGGAGATCAACGGGCTTCGA
CGATATGAGCCCGCTGGATCGCGCTGTGTTTCGGGCACGGGATGCGTTTG
AGGCTTGCGTCAATGGCTGTGATTCTTCTACGGCAGATTTGTCGTTGAAG
CGCTTATCAGATTATGTGACCTTGAAAGGTGATAACGTGATGCTTGATGG
GGGAATGGGAGAGGTTGTCGACACATTTGTTCAGCAATTGCAAGTGTCCC
AGCTTATGCTCGGCCGAAGGGTTGTACGCGTAGCTTACGGCGATGAAAAC
GGCGGAGGCGTGCGAATCACATTCGAAGATGGCTCCGTCTGGTCAGGAGA
CTGCATCATATGGACCCCTTCGATCAATGTGACAAAAAGAGCGGTGGTGG
AAGGCGTCTTCGAACCACGCCTACCAGACGAGAAGGTTGCCGCGATGAAC
GAGAGAGTCCAGGGCTTCGTTGAGAAGGTCTTCGTTTTCTTAAATGAAGC
ACTCAAGAACGTGACGTCCGACTGCAGCATGCCTATCATTTGGGAGGACT
CAAAAGCCATTCCACAATCTCAACAATGGTTCACGAATGTGTTTTCCGTG
CTTTACAGTTCGAAGCATAATGTAGTTTCATTTTGGCTCACTGGCGAGGC
TGCGAAGCATGTGTGTTCCCTCGCGAATGATCTTCAATCGGAACAAGTTG
CTTTGTTGTTGACGATCTTGTATTCCCAACCAATTACGGTTGGTATGGTG
ATCTGCTCCGAATGGAGCTTGAACCAGTCTACGCTAGGAAGTTATTCGTA
TGCGAAGGTACGATGCACAAAGGACGCCGTGCAAACACTTGCCAAACCCC
TTCCGTCAGCCGATAAACCTCTCGTTTGCTTTGCCGGGGAGGCCACGCAC
CAGAGCTTTTATTCCACTATGCACGGTGCGATTGAGTCCGGGTATCGAGA
GGCCGATCGGGTTGCTGCGTTCTTGAGTCAGCAGCCCCTTCGCATTTCGA
AGTCAGAAAATCGAATTGTCAGCTAG
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