Gchil1357.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1357.t1
Unique Name	Gchil1357.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:923710..924447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002946011.1
PFAMs	Peptidase_C1
Max annot lvl	2759\|Eukaryota
Evalue	1.17e-21
EggNOG OGs	COG4870@1\|root,2S8PN@2759\|Eukaryota
Description	Belongs to the peptidase C1 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1357	Gchil1357	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 923710..924447 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1357.t1.start1	Gchil1357.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 923710..923712 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1357.t1.CDS1	Gchil1357.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 923710..924447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1357.t1.exon1	Gchil1357.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 923710..924447 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1357.t1.stop1	Gchil1357.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 924445..924447 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1357.t1	Gchil1357.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 923710..924447 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:923710..924447+
coding sequence from alignment at tig00004433_pilon:923710..924447+

mRNA sequence

>Gchil1357.t1 ID=Gchil1357.t1|Name=Gchil1357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MAPLLLIFSFVCFFLQKYCRASILPKTSRHEHLTLLNESERVTINPQNHP
YPVSTTQVSFEQLVSTGLVVSKGSSGVLNFNITLKAVQASTLANTDQAFV
QCLTNAERSRYQEMKESYNGNLMVPMMQWLGVNLNGETTLRDMRRARHRQ
ELYGEKSKVVNQVLLEQVTSMVQISGTLMAEGVSIMPTTVFAFIRIARVV
LEDGTSMTVLSSNPNDLRAANSCGQMVQSSTVGLDIIDLPPSLGI*

spliced messenger RNA

>Gchil1357.t1 ID=Gchil1357.t1|Name=Gchil1357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004433_pilon:923710..924447+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCATTACTTCTCATATTTTCCTTTGTCTGCTTTTTTCTTCAAAA
GTATTGTCGGGCTTCAATCTTGCCAAAAACGTCTCGGCATGAACATTTGA
CTCTTTTGAACGAATCCGAAAGAGTGACAATCAATCCCCAAAACCATCCA
TATCCCGTATCAACCACACAAGTGTCCTTCGAGCAGCTCGTTAGCACGGG
CCTAGTTGTGTCGAAAGGTAGCAGTGGAGTTCTGAATTTCAACATCACTC
TAAAGGCTGTCCAAGCGTCAACTCTAGCAAACACCGATCAAGCGTTCGTG
CAATGTCTTACAAATGCAGAAAGATCTCGGTATCAAGAGATGAAAGAATC
TTACAATGGAAATTTAATGGTTCCAATGATGCAATGGCTAGGGGTAAATT
TGAATGGAGAAACAACCTTGAGAGACATGAGAAGAGCTCGTCATCGTCAA
GAACTCTATGGTGAGAAGTCGAAGGTTGTGAATCAGGTTTTGTTGGAACA
AGTTACTTCCATGGTTCAGATCAGTGGCACTCTCATGGCAGAGGGTGTCA
GTATTATGCCCACCACTGTGTTTGCCTTTATCAGGATTGCCAGAGTTGTA
CTCGAAGACGGCACTTCAATGACGGTTCTTTCATCGAATCCGAACGACCT
GAGAGCAGCTAATTCATGTGGGCAAATGGTGCAATCTAGTACCGTAGGTC
TCGACATCATTGATCTTCCGCCATCACTGGGGATTTGA

protein sequence of Gchil1357.t1

>Gchil1357.t1 ID=Gchil1357.t1|Name=Gchil1357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MAPLLLIFSFVCFFLQKYCRASILPKTSRHEHLTLLNESERVTINPQNHP
YPVSTTQVSFEQLVSTGLVVSKGSSGVLNFNITLKAVQASTLANTDQAFV
QCLTNAERSRYQEMKESYNGNLMVPMMQWLGVNLNGETTLRDMRRARHRQ
ELYGEKSKVVNQVLLEQVTSMVQISGTLMAEGVSIMPTTVFAFIRIARVV
LEDGTSMTVLSSNPNDLRAANSCGQMVQSSTVGLDIIDLPPSLGI*

mRNA from alignment at tig00004433_pilon:923710..924447+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1357.t1 ID=Gchil1357.t1|Name=Gchil1357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004433_pilon:923710..924447+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCATTACTTCTCATATTTTCCTTTGTCTGCTTTTTTCTTCAAAA
GTATTGTCGGGCTTCAATCTTGCCAAAAACGTCTCGGCATGAACATTTGA
CTCTTTTGAACGAATCCGAAAGAGTGACAATCAATCCCCAAAACCATCCA
TATCCCGTATCAACCACACAAGTGTCCTTCGAGCAGCTCGTTAGCACGGG
CCTAGTTGTGTCGAAAGGTAGCAGTGGAGTTCTGAATTTCAACATCACTC
TAAAGGCTGTCCAAGCGTCAACTCTAGCAAACACCGATCAAGCGTTCGTG
CAATGTCTTACAAATGCAGAAAGATCTCGGTATCAAGAGATGAAAGAATC
TTACAATGGAAATTTAATGGTTCCAATGATGCAATGGCTAGGGGTAAATT
TGAATGGAGAAACAACCTTGAGAGACATGAGAAGAGCTCGTCATCGTCAA
GAACTCTATGGTGAGAAGTCGAAGGTTGTGAATCAGGTTTTGTTGGAACA
AGTTACTTCCATGGTTCAGATCAGTGGCACTCTCATGGCAGAGGGTGTCA
GTATTATGCCCACCACTGTGTTTGCCTTTATCAGGATTGCCAGAGTTGTA
CTCGAAGACGGCACTTCAATGACGGTTCTTTCATCGAATCCGAACGACCT
GAGAGCAGCTAATTCATGTGGGCAAATGGTGCAATCTAGTACCGTAGGTC
TCGACATCATTGATCTTCCGCCATCACTGGGGATTTGA

Coding sequence (CDS) from alignment at tig00004433_pilon:923710..924447+

>Gchil1357.t1 ID=Gchil1357.t1|Name=Gchil1357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00004433_pilon:923710..924447+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCATTACTTCTCATATTTTCCTTTGTCTGCTTTTTTCTTCAAAA
GTATTGTCGGGCTTCAATCTTGCCAAAAACGTCTCGGCATGAACATTTGA
CTCTTTTGAACGAATCCGAAAGAGTGACAATCAATCCCCAAAACCATCCA
TATCCCGTATCAACCACACAAGTGTCCTTCGAGCAGCTCGTTAGCACGGG
CCTAGTTGTGTCGAAAGGTAGCAGTGGAGTTCTGAATTTCAACATCACTC
TAAAGGCTGTCCAAGCGTCAACTCTAGCAAACACCGATCAAGCGTTCGTG
CAATGTCTTACAAATGCAGAAAGATCTCGGTATCAAGAGATGAAAGAATC
TTACAATGGAAATTTAATGGTTCCAATGATGCAATGGCTAGGGGTAAATT
TGAATGGAGAAACAACCTTGAGAGACATGAGAAGAGCTCGTCATCGTCAA
GAACTCTATGGTGAGAAGTCGAAGGTTGTGAATCAGGTTTTGTTGGAACA
AGTTACTTCCATGGTTCAGATCAGTGGCACTCTCATGGCAGAGGGTGTCA
GTATTATGCCCACCACTGTGTTTGCCTTTATCAGGATTGCCAGAGTTGTA
CTCGAAGACGGCACTTCAATGACGGTTCTTTCATCGAATCCGAACGACCT
GAGAGCAGCTAATTCATGTGGGCAAATGGTGCAATCTAGTACCGTAGGTC
TCGACATCATTGATCTTCCGCCATCACTGGGGATTTGA