Gchil1349.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1349.t1
Unique NameGchil1349.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:853507..853911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1219065.VPR01S_14_00030
PFAMsGlyoxalase
Max annot lvl135623|Vibrionales
Evalue3.62e-36
EggNOG OGsCOG0346@1|root,COG0346@2|Bacteria,1N2SB@1224|Proteobacteria,1SA4P@1236|Gammaproteobacteria,1XY9F@135623|Vibrionales
DescriptionGlyoxalase-like domain
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1349Gchil1349Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 853507..853911 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1349.t1.start1Gchil1349.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 853507..853509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1349.t1.CDS1Gchil1349.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 853507..853911 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1349.t1.exon1Gchil1349.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 853507..853911 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1349.t1.stop1Gchil1349.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 853909..853911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1349.t1Gchil1349.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 853507..853911 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1349.t1 ID=Gchil1349.t1|Name=Gchil1349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=135bp
MTSLTIGVSHVALAVSTLSKTVQFFEELGFKKVGGDPDYPSIFVSDGCTI
ITVWQSKSKNPTPFDRTQNIGLHHLAIKCPTLEALNQTYEKVKGMKGTKI
EFAPMLMPDLPFTHFMCYEPCGVRIEFTYHPPSE*
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spliced messenger RNA

>Gchil1349.t1 ID=Gchil1349.t1|Name=Gchil1349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004433_pilon:853507..853911+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTCTAACAATCGGCGTAAGTCATGTCGCGTTGGCGGTATCGAC
TCTCTCGAAAACCGTTCAATTCTTCGAGGAGCTTGGCTTCAAAAAAGTCG
GCGGCGATCCCGATTATCCGTCTATCTTCGTATCGGACGGATGTACGATC
ATCACCGTCTGGCAGTCCAAATCGAAGAATCCCACGCCCTTTGATCGCAC
CCAGAACATTGGCCTGCACCATCTAGCAATCAAATGCCCAACCTTGGAAG
CTTTGAACCAGACGTACGAGAAAGTGAAAGGAATGAAGGGCACCAAAATT
GAATTTGCGCCAATGCTAATGCCAGATCTTCCGTTCACGCACTTCATGTG
CTACGAGCCGTGTGGTGTTCGGATTGAGTTCACCTATCACCCTCCATCGG
AGTGA
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protein sequence of Gchil1349.t1

>Gchil1349.t1 ID=Gchil1349.t1|Name=Gchil1349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=135bp
MTSLTIGVSHVALAVSTLSKTVQFFEELGFKKVGGDPDYPSIFVSDGCTI
ITVWQSKSKNPTPFDRTQNIGLHHLAIKCPTLEALNQTYEKVKGMKGTKI
EFAPMLMPDLPFTHFMCYEPCGVRIEFTYHPPSE*
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mRNA from alignment at tig00004433_pilon:853507..853911+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1349.t1 ID=Gchil1349.t1|Name=Gchil1349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004433_pilon:853507..853911+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTCTAACAATCGGCGTAAGTCATGTCGCGTTGGCGGTATCGAC
TCTCTCGAAAACCGTTCAATTCTTCGAGGAGCTTGGCTTCAAAAAAGTCG
GCGGCGATCCCGATTATCCGTCTATCTTCGTATCGGACGGATGTACGATC
ATCACCGTCTGGCAGTCCAAATCGAAGAATCCCACGCCCTTTGATCGCAC
CCAGAACATTGGCCTGCACCATCTAGCAATCAAATGCCCAACCTTGGAAG
CTTTGAACCAGACGTACGAGAAAGTGAAAGGAATGAAGGGCACCAAAATT
GAATTTGCGCCAATGCTAATGCCAGATCTTCCGTTCACGCACTTCATGTG
CTACGAGCCGTGTGGTGTTCGGATTGAGTTCACCTATCACCCTCCATCGG
AGTGA
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Coding sequence (CDS) from alignment at tig00004433_pilon:853507..853911+

>Gchil1349.t1 ID=Gchil1349.t1|Name=Gchil1349.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00004433_pilon:853507..853911+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTCTAACAATCGGCGTAAGTCATGTCGCGTTGGCGGTATCGAC
TCTCTCGAAAACCGTTCAATTCTTCGAGGAGCTTGGCTTCAAAAAAGTCG
GCGGCGATCCCGATTATCCGTCTATCTTCGTATCGGACGGATGTACGATC
ATCACCGTCTGGCAGTCCAAATCGAAGAATCCCACGCCCTTTGATCGCAC
CCAGAACATTGGCCTGCACCATCTAGCAATCAAATGCCCAACCTTGGAAG
CTTTGAACCAGACGTACGAGAAAGTGAAAGGAATGAAGGGCACCAAAATT
GAATTTGCGCCAATGCTAATGCCAGATCTTCCGTTCACGCACTTCATGTG
CTACGAGCCGTGTGGTGTTCGGATTGAGTTCACCTATCACCCTCCATCGG
AGTGA
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