Gchil1347.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1347.t1
Unique NameGchil1347.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:808253..809589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FYF7
PFAMsDynamin_M,Dynamin_N,GED
Max annot lvl2759|Eukaryota
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
Evalue2.71e-50
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
EC3.6.5.5
Descriptionmitochondrial fission
COG categoryI
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1347Gchil1347Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 808253..809589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1Gchil1347.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 808253..809589 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1.start1Gchil1347.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 808253..808255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1.CDS1Gchil1347.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 808253..809474 +
Gchil1347.t1.CDS2Gchil1347.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 809558..809589 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1.exon1Gchil1347.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 808253..809474 +
Gchil1347.t1.exon2Gchil1347.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 809558..809589 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1.intron1Gchil1347.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 809475..809557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1347.t1.stop1Gchil1347.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 809587..809589 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1347.t1 ID=Gchil1347.t1|Name=Gchil1347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MKTVPISETIDDVFEGRLGKKLSLIEELRIDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLHTDPQIPTAIALVSTNADFS
GAKKCLDMKSLEEAILDFSSSITGNGTPIADSPIHIRYTRKQGPVMTLID
LPGITHVDVDDHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQLHDKDGERTIGVVSKCDLVPQNSDILEKIRMSRPSDVKLALGFI
AVRNKGIGEEEKDIENIESKLFATHDLLKHLEDDERGYSALTKKIVDLQS
ERVDGFIPEAMELVQKRIRTLQMEVRKFGHNPNTAAEKRMVLTELLCAVQ
ERIGSLIRAQNTPEKKLNISARSMEFCQTFSRSITKQLPDVLSQEFEAML
HVYVKESRSNGDLNLRC*
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spliced messenger RNA

>Gchil1347.t1 ID=Gchil1347.t1|Name=Gchil1347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004433_pilon:808253..809589+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCGTTCCAATTTCTGAAACTATAGATGATGTCTTCGAAGGTCG
TCTCGGAAAAAAGCTATCTCTTATCGAAGAGCTCCGAATTGATCTTGGAA
ACGAAGGTATCCAGTGTCCGGGAGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAGAGACTCACCTCAATTCGCTTCCCGAGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTTCAACTTCATACTGATC
CACAAATCCCAACTGCCATAGCTTTGGTTTCCACGAATGCCGATTTTTCG
GGAGCGAAAAAGTGCCTGGATATGAAATCTTTGGAAGAAGCCATTTTGGA
TTTTTCTTCTTCTATTACCGGAAACGGTACTCCTATTGCTGATTCGCCTA
TTCACATTCGATACACAAGGAAACAAGGACCTGTGATGACCTTGATTGAC
TTGCCGGGCATCACTCATGTTGATGTGGATGACCATGAAAATTTCGATAT
TCATGAAGTAACTTCTTCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTAGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGCATTGCTCAATTGCACGACAAGGACGGAGAACGAACCATTGG
TGTGGTGTCAAAGTGTGATCTCGTACCGCAGAACTCTGATATCCTGGAGA
AGATACGCATGAGTCGACCGAGCGACGTAAAGCTCGCACTGGGTTTCATT
GCAGTGCGAAACAAAGGTATCGGAGAAGAAGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGACTTACTGAAGCATTTAGAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAGT
GAACGCGTGGATGGTTTCATACCTGAGGCGATGGAATTAGTTCAGAAACG
GATTAGGACCTTACAAATGGAGGTACGGAAGTTTGGTCACAATCCAAATA
CTGCTGCAGAGAAGCGAATGGTTTTGACGGAGCTTCTGTGCGCAGTCCAA
GAGCGAATAGGTAGCTTGATCCGAGCGCAGAACACTCCAGAAAAGAAGCT
AAACATATCAGCACGGTCCATGGAATTTTGCCAAACGTTTTCTCGCTCCA
TTACAAAGCAATTGCCTGATGTTCTGAGTCAGGAGTTTGAGGCCATGTTA
CATGTTTACGTTAAGGAATCCAgatcaaacggAGATcttaatttgcgatg
ttga
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protein sequence of Gchil1347.t1

>Gchil1347.t1 ID=Gchil1347.t1|Name=Gchil1347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MKTVPISETIDDVFEGRLGKKLSLIEELRIDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLHTDPQIPTAIALVSTNADFS
GAKKCLDMKSLEEAILDFSSSITGNGTPIADSPIHIRYTRKQGPVMTLID
LPGITHVDVDDHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQLHDKDGERTIGVVSKCDLVPQNSDILEKIRMSRPSDVKLALGFI
AVRNKGIGEEEKDIENIESKLFATHDLLKHLEDDERGYSALTKKIVDLQS
ERVDGFIPEAMELVQKRIRTLQMEVRKFGHNPNTAAEKRMVLTELLCAVQ
ERIGSLIRAQNTPEKKLNISARSMEFCQTFSRSITKQLPDVLSQEFEAML
HVYVKESRSNGDLNLRC*
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mRNA from alignment at tig00004433_pilon:808253..809589+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1347.t1 ID=Gchil1347.t1|Name=Gchil1347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1337bp|location=Sequence derived from alignment at tig00004433_pilon:808253..809589+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCGTTCCAATTTCTGAAACTATAGATGATGTCTTCGAAGGTCG
TCTCGGAAAAAAGCTATCTCTTATCGAAGAGCTCCGAATTGATCTTGGAA
ACGAAGGTATCCAGTGTCCGGGAGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAGAGACTCACCTCAATTCGCTTCCCGAGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTTCAACTTCATACTGATC
CACAAATCCCAACTGCCATAGCTTTGGTTTCCACGAATGCCGATTTTTCG
GGAGCGAAAAAGTGCCTGGATATGAAATCTTTGGAAGAAGCCATTTTGGA
TTTTTCTTCTTCTATTACCGGAAACGGTACTCCTATTGCTGATTCGCCTA
TTCACATTCGATACACAAGGAAACAAGGACCTGTGATGACCTTGATTGAC
TTGCCGGGCATCACTCATGTTGATGTGGATGACCATGAAAATTTCGATAT
TCATGAAGTAACTTCTTCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTAGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGCATTGCTCAATTGCACGACAAGGACGGAGAACGAACCATTGG
TGTGGTGTCAAAGTGTGATCTCGTACCGCAGAACTCTGATATCCTGGAGA
AGATACGCATGAGTCGACCGAGCGACGTAAAGCTCGCACTGGGTTTCATT
GCAGTGCGAAACAAAGGTATCGGAGAAGAAGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGACTTACTGAAGCATTTAGAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAGT
GAACGCGTGGATGGTTTCATACCTGAGGCGATGGAATTAGTTCAGAAACG
GATTAGGACCTTACAAATGGAGGTACGGAAGTTTGGTCACAATCCAAATA
CTGCTGCAGAGAAGCGAATGGTTTTGACGGAGCTTCTGTGCGCAGTCCAA
GAGCGAATAGGTAGCTTGATCCGAGCGCAGAACACTCCAGAAAAGAAGCT
AAACATATCAGCACGGTCCATGGAATTTTGCCAAACGTTTTCTCGCTCCA
TTACAAAGCAATTGCCTGATGTTCTGAGTCAGGAGTTTGAGGCCATGTTA
CATGTTTACGTTAAGGAATCCAGTGGGTACACATTACCAAATTTTAtcag
cgattctgttttccggaaagtgatttgcggaatgctgttggatactttgg
ttcaggatcaaacggAGATcttaatttgcgatgttga
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Coding sequence (CDS) from alignment at tig00004433_pilon:808253..809589+

>Gchil1347.t1 ID=Gchil1347.t1|Name=Gchil1347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00004433_pilon:808253..809589+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCGTTCCAATTTCTGAAACTATAGATGATGTCTTCGAAGGTCG
TCTCGGAAAAAAGCTATCTCTTATCGAAGAGCTCCGAATTGATCTTGGAA
ACGAAGGTATCCAGTGTCCGGGAGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAGAGACTCACCTCAATTCGCTTCCCGAGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTTCAACTTCATACTGATC
CACAAATCCCAACTGCCATAGCTTTGGTTTCCACGAATGCCGATTTTTCG
GGAGCGAAAAAGTGCCTGGATATGAAATCTTTGGAAGAAGCCATTTTGGA
TTTTTCTTCTTCTATTACCGGAAACGGTACTCCTATTGCTGATTCGCCTA
TTCACATTCGATACACAAGGAAACAAGGACCTGTGATGACCTTGATTGAC
TTGCCGGGCATCACTCATGTTGATGTGGATGACCATGAAAATTTCGATAT
TCATGAAGTAACTTCTTCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTAGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGCATTGCTCAATTGCACGACAAGGACGGAGAACGAACCATTGG
TGTGGTGTCAAAGTGTGATCTCGTACCGCAGAACTCTGATATCCTGGAGA
AGATACGCATGAGTCGACCGAGCGACGTAAAGCTCGCACTGGGTTTCATT
GCAGTGCGAAACAAAGGTATCGGAGAAGAAGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGACTTACTGAAGCATTTAGAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAGT
GAACGCGTGGATGGTTTCATACCTGAGGCGATGGAATTAGTTCAGAAACG
GATTAGGACCTTACAAATGGAGGTACGGAAGTTTGGTCACAATCCAAATA
CTGCTGCAGAGAAGCGAATGGTTTTGACGGAGCTTCTGTGCGCAGTCCAA
GAGCGAATAGGTAGCTTGATCCGAGCGCAGAACACTCCAGAAAAGAAGCT
AAACATATCAGCACGGTCCATGGAATTTTGCCAAACGTTTTCTCGCTCCA
TTACAAAGCAATTGCCTGATGTTCTGAGTCAGGAGTTTGAGGCCATGTTA
CATGTTTACGTTAAGGAATCCAgatcaaacggAGATcttaatttgcgatg
ttga
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