Gchil1344.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1344.t1
Unique NameGchil1344.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:758118..760136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FYF7
PFAMsDynamin_M,Dynamin_N,GED
Max annot lvl2759|Eukaryota
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
Evalue4.69e-51
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
EC3.6.5.5
Descriptionmitochondrial fission
COG categoryI
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1344Gchil1344Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 758118..760136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1Gchil1344.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 758118..760136 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1.start1Gchil1344.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 758118..758120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1.CDS1Gchil1344.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 758118..759221 +
Gchil1344.t1.CDS2Gchil1344.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 759963..760136 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1.exon1Gchil1344.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 758118..759221 +
Gchil1344.t1.exon2Gchil1344.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 759963..760136 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1.intron1Gchil1344.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 759222..759962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1344.t1.stop1Gchil1344.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 760134..760136 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1344.t1 ID=Gchil1344.t1|Name=Gchil1344.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MGTTPISETIDDVFERRLGKKLSLIEELRTDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLQTDPHIATATALISTNADFS
EAKKCTDMKSLEEAILDFSSSITGNGTPIADLPIHIRYTRKKGPVMTLID
LPGITHVDVDGHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQSHDKDGERTIGVVSKCDLVPPNSDILEKIRMSRPSDVKLALGFI
AVRNKSIGEDEKDIENIESKLFATHDLLKHLKDDERGYSALTKKIVDLQN
ERVDGFIPKAMGLVQKRIRALQMERRKFGHSPNTAAEKRMVLTGLLCEVQ
ERIGSLIRAVNIPEKKLNLIYRVHEGFHRKVQEMFDVDDALSTIMEEKQS
VKEKRITIEDRLKLMKSSLRKLRAF*
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spliced messenger RNA

>Gchil1344.t1 ID=Gchil1344.t1|Name=Gchil1344.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004433_pilon:758118..760136+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGTCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TTTTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACCTCATATATCGTGTTCATGAAGGTTTTCACCGCAAAGTTCAAGAAA
TGTTTGATGTTGATGACGCCCTGAGCACAATCATGGAAGAAAAACAGTCT
GTCAAGGAAAAAAGGATTACCATAGAGGATCGCCTGAAATTGATGAAATC
TTCTCTAAGAAAACTAAGGGCATTTTAG
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protein sequence of Gchil1344.t1

>Gchil1344.t1 ID=Gchil1344.t1|Name=Gchil1344.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MGTTPISETIDDVFERRLGKKLSLIEELRTDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLQTDPHIATATALISTNADFS
EAKKCTDMKSLEEAILDFSSSITGNGTPIADLPIHIRYTRKKGPVMTLID
LPGITHVDVDGHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQSHDKDGERTIGVVSKCDLVPPNSDILEKIRMSRPSDVKLALGFI
AVRNKSIGEDEKDIENIESKLFATHDLLKHLKDDERGYSALTKKIVDLQN
ERVDGFIPKAMGLVQKRIRALQMERRKFGHSPNTAAEKRMVLTGLLCEVQ
ERIGSLIRAVNIPEKKLNLIYRVHEGFHRKVQEMFDVDDALSTIMEEKQS
VKEKRITIEDRLKLMKSSLRKLRAF*
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mRNA from alignment at tig00004433_pilon:758118..760136+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1344.t1 ID=Gchil1344.t1|Name=Gchil1344.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004433_pilon:758118..760136+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGTCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TTTTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACGTATCAGCTCGATCCATGGAGTTTTGCCAAACATTTTCTCGTTCCA
TTACAGAACAATTGCCTAACGTTCTGAGCCAGGAATTTGAGGACGAATTA
CATGGTTACGTTGAAGAATCCACTGGGTACGCATTACCAAATTTTGtcag
cgattctgttttccggaaagtgatttgcggaatgctgttggatactttgg
ttcaggatcaaacggAGATcttaatttgcgatgttgaggactacatgaaa
gaagcctaccaaatcgtaatcagcagcacagACGTCTGTAAGAAATATGA
AAAGCTTGGATCTAGAGTTTCTCAAGAAATCTCGAGACTTATTGAGGATG
CTGCTGAAAGtaccagagttgccaccggtgcacttatttctgctgaactg
agtcagatttttacccagAATCCGACATACATTCAAACTCTTACGGAGGT
CAGAGCCAATGTTGTTGCATTGACCTCAGTCTCATGCATGCAAACCGTTG
TTGAAAAAATAGGCAACGGAGGGCAAACACTGAGTTTCATTGATGAAATT
GAGAAAAATGCGAAAAACTGTGAAATCGACGAAACTTTCCTGGAAAAATG
GCGTGTTgtactgcaatcaattgacaaatcatcagaaagagccatgaaac
tttcaatatttgatttacaaatttcaattcattgctatctggatgttatg
ttgAAGCGTCTATTCGACCTTGTTCCCATGGTTGTACGGGACAAGCTCAT
ATATCGTGTTCATGAAGGTTTTCACCGCAAAGTTCAAGAAATGTTTGATG
TTGATGACGCCCTGAGCACAATCATGGAAGAAAAACAGTCTGTCAAGGAA
AAAAGGATTACCATAGAGGATCGCCTGAAATTGATGAAATCTTCTCTAAG
AAAACTAAGGGCATTTTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:758118..760136+

>Gchil1344.t1 ID=Gchil1344.t1|Name=Gchil1344.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004433_pilon:758118..760136+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGTCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TTTTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACCTCATATATCGTGTTCATGAAGGTTTTCACCGCAAAGTTCAAGAAA
TGTTTGATGTTGATGACGCCCTGAGCACAATCATGGAAGAAAAACAGTCT
GTCAAGGAAAAAAGGATTACCATAGAGGATCGCCTGAAATTGATGAAATC
TTCTCTAAGAAAACTAAGGGCATTTTAG
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