Gchil1342.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1342.t1
Unique NameGchil1342.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:729308..730729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_3289
PFAMsGSDH
Max annot lvl1117|Cyanobacteria
Evalue3.74e-44
EggNOG OGsCOG2133@1|root,COG2133@2|Bacteria,1G39K@1117|Cyanobacteria,1HR5R@1161|Nostocales
DescriptionGlucose / Sorbosone dehydrogenase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1342Gchil1342Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 729308..730729 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1342.t1.stop1Gchil1342.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 729308..729310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1342.t1.CDS1Gchil1342.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 729308..730729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1342.t1.exon1Gchil1342.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 729308..730729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1342.t1.start1Gchil1342.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 730727..730729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1342.t1Gchil1342.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 729308..730729 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1342.t1 ID=Gchil1342.t1|Name=Gchil1342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MRFFVLHVAVTVLLLDATFAANPVTTPIIKGELNVYTRRFAKVPDRNGGP
AQITCIIPYGLDLYVCTANAVYKVSRQGTVSLFINVEDAIASQTDRFLNT
FNKMHGGVRSIAFHPSYRTTGLFYISAMESRPKDPPNFKYVSDSSNPINA
DSVLLEFKYDRFRRSVDLSSYRNVFRVGMPVFDHPIKQMAFYGSYLYIAH
GDGSVQSATAGGGQNNDALGKILRIDPLQRGSQPYTVPSSNPFVGSSSFP
DEVYAYGFRNPHHICFGRDGTLYAAETGRDNVEEINLVASGGNYGWSERE
GTFVHLNGGGLINGVTELPADDAKFGYIYPAAQVGHEGNVGAGFVGQAIA
GGCPVENGSPMSGNYYYADFPRSGNLYYSGISELRQAKTTGTPSSLTQAR
TRQAKIFFEKNGVVSEFDSLGDVVRFDEGLSGGSRADIRFGRNAYGDLLW
SSKANGRLYIFTSSQRGGPGGPV*
back to top

spliced messenger RNA

>Gchil1342.t1 ID=Gchil1342.t1|Name=Gchil1342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004433_pilon:729308..730729- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCTTCGTCCTTCATGTCGCTGTCACGGTGCTCCTTCTTGATGC
AACTTTTGCCGCAAACCCTGTGACCACGCCAATCATCAAAGGTGAACTCA
ATGTTTACACGAGGCGCTTTGCAAAGGTGCCAGACAGAAACGGAGGACCA
GCTCAGATAACTTGCATCATTCCGTATGGTTTGGATCTGTACGTGTGCAC
CGCCAATGCAGTGTACAAAGTATCACGACAGGGAACAGTGTCGCTTTTCA
TCAACGTCGAGGATGCAATCGCAAGTCAGACAGACCGCTTCCTGAATACG
TTTAACAAGATGCATGGGGGTGTTCGCAGCATCGCGTTTCATCCGAGTTA
TAGAACCACCGGCTTGTTCTACATCTCTGCCATGGAGTCTCGTCCAAAAG
ACCCTCCCAACTTCAAGTATGTGTCCGACTCGTCCAATCCCATCAACGCT
GACAGTGTGCTGCTCGAGTTCAAGTACGACAGATTCAGACGCTCCGTGGA
TCTGAGTTCTTACCGAAACGTGTTCCGCGTCGGTATGCCTGTATTTGATC
ATCCCATCAAGCAAATGGCATTCTATGGGTCATACTTGTATATTGCGCAT
GGTGACGGTTCAGTGCAGTCTGCCACAGCCGGCGGGGGACAGAACAACGA
CGCGCTTGGGAAAATTCTTCGAATCGACCCGCTTCAACGTGGTAGCCAGC
CTTACACGGTACCTTCATCGAATCCGTTCGTAGGAAGCAGCTCTTTTCCC
GATGAGGTATACGCATATGGATTCCGAAACCCACACCACATTTGCTTCGG
TCGCGATGGCACGCTGTACGCGGCAGAAACTGGGCGCGACAATGTGGAAG
AGATAAATCTAGTGGCGTCGGGAGGAAATTACGGTTGGTCGGAGCGAGAG
GGAACATTCGTGCACCTGAATGGGGGTGGATTGATCAACGGGGTGACAGA
GTTGCCCGCGGACGACGCCAAGTTCGGGTACATCTACCCAGCGGCGCAGG
TAGGACACGAAGGAAATGTCGGGGCGGGCTTTGTGGGCCAGGCTATCGCG
GGCGGCTGCCCTGTTGAAAATGGGTCGCCCATGTCCGGCAACTATTACTA
TGCCGACTTTCCGAGGAGCGGCAATCTGTACTACTCTGGAATCTCGGAAC
TGCGACAGGCGAAGACCACGGGGACGCCTTCGTCGCTGACGCAGGCTCGA
ACGCGACAAGCGAAGATCTTCTTCGAGAAAAACGGCGTGGTTAGCGAGTT
TGACTCGCTTGGCGACGTAGTGCGTTTCGACGAAGGGCTCAGTGGCGGGT
CGCGCGCCGACATTCGGTTCGGGCGCAATGCGTACGGCGATTTGTTGTGG
TCAAGCAAGGCCAACGGCCGCTTGTACATTTTCACTTCTTCGCAGAGAGG
TGGTCCGGGCGGCCCGGTATGA
back to top

protein sequence of Gchil1342.t1

>Gchil1342.t1 ID=Gchil1342.t1|Name=Gchil1342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MRFFVLHVAVTVLLLDATFAANPVTTPIIKGELNVYTRRFAKVPDRNGGP
AQITCIIPYGLDLYVCTANAVYKVSRQGTVSLFINVEDAIASQTDRFLNT
FNKMHGGVRSIAFHPSYRTTGLFYISAMESRPKDPPNFKYVSDSSNPINA
DSVLLEFKYDRFRRSVDLSSYRNVFRVGMPVFDHPIKQMAFYGSYLYIAH
GDGSVQSATAGGGQNNDALGKILRIDPLQRGSQPYTVPSSNPFVGSSSFP
DEVYAYGFRNPHHICFGRDGTLYAAETGRDNVEEINLVASGGNYGWSERE
GTFVHLNGGGLINGVTELPADDAKFGYIYPAAQVGHEGNVGAGFVGQAIA
GGCPVENGSPMSGNYYYADFPRSGNLYYSGISELRQAKTTGTPSSLTQAR
TRQAKIFFEKNGVVSEFDSLGDVVRFDEGLSGGSRADIRFGRNAYGDLLW
SSKANGRLYIFTSSQRGGPGGPV*
back to top

mRNA from alignment at tig00004433_pilon:729308..730729-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1342.t1 ID=Gchil1342.t1|Name=Gchil1342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004433_pilon:729308..730729- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTCTTCGTCCTTCATGTCGCTGTCACGGTGCTCCTTCTTGATGC
AACTTTTGCCGCAAACCCTGTGACCACGCCAATCATCAAAGGTGAACTCA
ATGTTTACACGAGGCGCTTTGCAAAGGTGCCAGACAGAAACGGAGGACCA
GCTCAGATAACTTGCATCATTCCGTATGGTTTGGATCTGTACGTGTGCAC
CGCCAATGCAGTGTACAAAGTATCACGACAGGGAACAGTGTCGCTTTTCA
TCAACGTCGAGGATGCAATCGCAAGTCAGACAGACCGCTTCCTGAATACG
TTTAACAAGATGCATGGGGGTGTTCGCAGCATCGCGTTTCATCCGAGTTA
TAGAACCACCGGCTTGTTCTACATCTCTGCCATGGAGTCTCGTCCAAAAG
ACCCTCCCAACTTCAAGTATGTGTCCGACTCGTCCAATCCCATCAACGCT
GACAGTGTGCTGCTCGAGTTCAAGTACGACAGATTCAGACGCTCCGTGGA
TCTGAGTTCTTACCGAAACGTGTTCCGCGTCGGTATGCCTGTATTTGATC
ATCCCATCAAGCAAATGGCATTCTATGGGTCATACTTGTATATTGCGCAT
GGTGACGGTTCAGTGCAGTCTGCCACAGCCGGCGGGGGACAGAACAACGA
CGCGCTTGGGAAAATTCTTCGAATCGACCCGCTTCAACGTGGTAGCCAGC
CTTACACGGTACCTTCATCGAATCCGTTCGTAGGAAGCAGCTCTTTTCCC
GATGAGGTATACGCATATGGATTCCGAAACCCACACCACATTTGCTTCGG
TCGCGATGGCACGCTGTACGCGGCAGAAACTGGGCGCGACAATGTGGAAG
AGATAAATCTAGTGGCGTCGGGAGGAAATTACGGTTGGTCGGAGCGAGAG
GGAACATTCGTGCACCTGAATGGGGGTGGATTGATCAACGGGGTGACAGA
GTTGCCCGCGGACGACGCCAAGTTCGGGTACATCTACCCAGCGGCGCAGG
TAGGACACGAAGGAAATGTCGGGGCGGGCTTTGTGGGCCAGGCTATCGCG
GGCGGCTGCCCTGTTGAAAATGGGTCGCCCATGTCCGGCAACTATTACTA
TGCCGACTTTCCGAGGAGCGGCAATCTGTACTACTCTGGAATCTCGGAAC
TGCGACAGGCGAAGACCACGGGGACGCCTTCGTCGCTGACGCAGGCTCGA
ACGCGACAAGCGAAGATCTTCTTCGAGAAAAACGGCGTGGTTAGCGAGTT
TGACTCGCTTGGCGACGTAGTGCGTTTCGACGAAGGGCTCAGTGGCGGGT
CGCGCGCCGACATTCGGTTCGGGCGCAATGCGTACGGCGATTTGTTGTGG
TCAAGCAAGGCCAACGGCCGCTTGTACATTTTCACTTCTTCGCAGAGAGG
TGGTCCGGGCGGCCCGGTATGA
back to top

Coding sequence (CDS) from alignment at tig00004433_pilon:729308..730729-

>Gchil1342.t1 ID=Gchil1342.t1|Name=Gchil1342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004433_pilon:729308..730729- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTCTTCGTCCTTCATGTCGCTGTCACGGTGCTCCTTCTTGATGC
AACTTTTGCCGCAAACCCTGTGACCACGCCAATCATCAAAGGTGAACTCA
ATGTTTACACGAGGCGCTTTGCAAAGGTGCCAGACAGAAACGGAGGACCA
GCTCAGATAACTTGCATCATTCCGTATGGTTTGGATCTGTACGTGTGCAC
CGCCAATGCAGTGTACAAAGTATCACGACAGGGAACAGTGTCGCTTTTCA
TCAACGTCGAGGATGCAATCGCAAGTCAGACAGACCGCTTCCTGAATACG
TTTAACAAGATGCATGGGGGTGTTCGCAGCATCGCGTTTCATCCGAGTTA
TAGAACCACCGGCTTGTTCTACATCTCTGCCATGGAGTCTCGTCCAAAAG
ACCCTCCCAACTTCAAGTATGTGTCCGACTCGTCCAATCCCATCAACGCT
GACAGTGTGCTGCTCGAGTTCAAGTACGACAGATTCAGACGCTCCGTGGA
TCTGAGTTCTTACCGAAACGTGTTCCGCGTCGGTATGCCTGTATTTGATC
ATCCCATCAAGCAAATGGCATTCTATGGGTCATACTTGTATATTGCGCAT
GGTGACGGTTCAGTGCAGTCTGCCACAGCCGGCGGGGGACAGAACAACGA
CGCGCTTGGGAAAATTCTTCGAATCGACCCGCTTCAACGTGGTAGCCAGC
CTTACACGGTACCTTCATCGAATCCGTTCGTAGGAAGCAGCTCTTTTCCC
GATGAGGTATACGCATATGGATTCCGAAACCCACACCACATTTGCTTCGG
TCGCGATGGCACGCTGTACGCGGCAGAAACTGGGCGCGACAATGTGGAAG
AGATAAATCTAGTGGCGTCGGGAGGAAATTACGGTTGGTCGGAGCGAGAG
GGAACATTCGTGCACCTGAATGGGGGTGGATTGATCAACGGGGTGACAGA
GTTGCCCGCGGACGACGCCAAGTTCGGGTACATCTACCCAGCGGCGCAGG
TAGGACACGAAGGAAATGTCGGGGCGGGCTTTGTGGGCCAGGCTATCGCG
GGCGGCTGCCCTGTTGAAAATGGGTCGCCCATGTCCGGCAACTATTACTA
TGCCGACTTTCCGAGGAGCGGCAATCTGTACTACTCTGGAATCTCGGAAC
TGCGACAGGCGAAGACCACGGGGACGCCTTCGTCGCTGACGCAGGCTCGA
ACGCGACAAGCGAAGATCTTCTTCGAGAAAAACGGCGTGGTTAGCGAGTT
TGACTCGCTTGGCGACGTAGTGCGTTTCGACGAAGGGCTCAGTGGCGGGT
CGCGCGCCGACATTCGGTTCGGGCGCAATGCGTACGGCGATTTGTTGTGG
TCAAGCAAGGCCAACGGCCGCTTGTACATTTTCACTTCTTCGCAGAGAGG
TGGTCCGGGCGGCCCGGTATGA
back to top