Gchil1340.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1340.t1
Unique Name	Gchil1340.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:625536..626387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	929558.SMGD1_2470
Preferred name	cah
PFAMs	Carb_anhydrase
Max annot lvl	29547\|Epsilonproteobacteria
KEGG rclass	RC02807
KEGG ko	ko:K01674
KEGG Reaction	R00132,R10092
KEGG Pathway	ko00910,map00910
Evalue	3.01e-37
EggNOG OGs	COG3338@1\|root,COG3338@2\|Bacteria,1PEA6@1224\|Proteobacteria,42RBG@68525\|delta/epsilon subdivisions,2YP5T@29547\|Epsilonproteobacteria
EC	4.2.1.1
Description	carbonic anhydrase
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1340	Gchil1340	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 625536..626387 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1340.t1.start1	Gchil1340.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 625536..625538 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1340.t1.CDS1	Gchil1340.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 625536..626387 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1340.t1.exon1	Gchil1340.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 625536..626387 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1340.t1.stop1	Gchil1340.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 626385..626387 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1340.t1	Gchil1340.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 625536..626387 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:625536..626387+
coding sequence from alignment at tig00004433_pilon:625536..626387+

mRNA sequence

>Gchil1340.t1 ID=Gchil1340.t1|Name=Gchil1340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MNLFTVFVALLFTISVLGDEELEVDSSGCAVKSAVGNFAYDITLPNNPSN
WGNIKEEFATCKDGDSQSPINFPVAFQYAPRAAGPKPMMNIANMTFGASS
YNWAMSCSDESGSCGTTTFNGKTFELINVHFHSPSEHKLYGKQYPLECHM
VHAAEDGSLAVIGIMFDYAGETSYPARIYHRVTPEYGDNRVLATVLDGVK
TDRVEWSIPVGQLVDHNKGYCSYSGSLTTPPCTEGVTWFMSMNILSISKR
QVHEYSLTAGTSIDGNNRPVKPLNERPVTCYVA*

spliced messenger RNA

>Gchil1340.t1 ID=Gchil1340.t1|Name=Gchil1340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004433_pilon:625536..626387+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTGTTTACAGTTTTCGTAGCTCTGCTCTTCACCATTTCCGTGCT
GGGCGACGAAGAACTCGAGGTTGATTCGTCAGGGTGTGCGGTGAAATCGG
CCGTTGGCAACTTTGCTTACGATATCACATTACCGAACAACCCGTCCAAC
TGGGGAAACATCAAGGAAGAATTCGCTACTTGCAAAGATGGTGACAGTCA
GTCGCCGATCAACTTCCCGGTCGCGTTCCAATACGCTCCGAGGGCCGCCG
GTCCTAAACCGATGATGAACATTGCAAATATGACATTCGGAGCAAGTTCG
TACAATTGGGCCATGTCTTGCAGCGATGAATCGGGTTCCTGCGGTACCAC
TACCTTCAACGGCAAAACTTTCGAGCTTATCAACGTACATTTCCACTCGC
CCAGTGAGCACAAGCTGTACGGCAAGCAATATCCGTTGGAATGCCACATG
GTGCACGCCGCTGAGGACGGCTCGCTGGCCGTCATTGGCATTATGTTCGA
CTACGCCGGTGAGACCTCGTACCCCGCTCGCATCTATCATAGGGTCACCC
CCGAGTACGGAGACAACCGCGTTCTCGCCACTGTGCTGGACGGTGTGAAG
ACAGATCGCGTGGAATGGTCCATTCCCGTGGGTCAACTTGTGGACCATAA
CAAGGGTTACTGCTCGTATTCTGGATCGCTGACCACCCCTCCGTGTACTG
AAGGCGTCACATGGTTCATGTCCATGAACATATTGTCCATCTCGAAGCGA
CAGGTGCATGAGTACTCGCTCACGGCTGGAACTAGTATTGATGGCAACAA
CCGACCAGTGAAGCCTCTGAACGAGCGTCCCGTCACATGTTATGTGGCGT
AA

protein sequence of Gchil1340.t1

>Gchil1340.t1 ID=Gchil1340.t1|Name=Gchil1340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MNLFTVFVALLFTISVLGDEELEVDSSGCAVKSAVGNFAYDITLPNNPSN
WGNIKEEFATCKDGDSQSPINFPVAFQYAPRAAGPKPMMNIANMTFGASS
YNWAMSCSDESGSCGTTTFNGKTFELINVHFHSPSEHKLYGKQYPLECHM
VHAAEDGSLAVIGIMFDYAGETSYPARIYHRVTPEYGDNRVLATVLDGVK
TDRVEWSIPVGQLVDHNKGYCSYSGSLTTPPCTEGVTWFMSMNILSISKR
QVHEYSLTAGTSIDGNNRPVKPLNERPVTCYVA*

mRNA from alignment at tig00004433_pilon:625536..626387+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1340.t1 ID=Gchil1340.t1|Name=Gchil1340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004433_pilon:625536..626387+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTGTTTACAGTTTTCGTAGCTCTGCTCTTCACCATTTCCGTGCT
GGGCGACGAAGAACTCGAGGTTGATTCGTCAGGGTGTGCGGTGAAATCGG
CCGTTGGCAACTTTGCTTACGATATCACATTACCGAACAACCCGTCCAAC
TGGGGAAACATCAAGGAAGAATTCGCTACTTGCAAAGATGGTGACAGTCA
GTCGCCGATCAACTTCCCGGTCGCGTTCCAATACGCTCCGAGGGCCGCCG
GTCCTAAACCGATGATGAACATTGCAAATATGACATTCGGAGCAAGTTCG
TACAATTGGGCCATGTCTTGCAGCGATGAATCGGGTTCCTGCGGTACCAC
TACCTTCAACGGCAAAACTTTCGAGCTTATCAACGTACATTTCCACTCGC
CCAGTGAGCACAAGCTGTACGGCAAGCAATATCCGTTGGAATGCCACATG
GTGCACGCCGCTGAGGACGGCTCGCTGGCCGTCATTGGCATTATGTTCGA
CTACGCCGGTGAGACCTCGTACCCCGCTCGCATCTATCATAGGGTCACCC
CCGAGTACGGAGACAACCGCGTTCTCGCCACTGTGCTGGACGGTGTGAAG
ACAGATCGCGTGGAATGGTCCATTCCCGTGGGTCAACTTGTGGACCATAA
CAAGGGTTACTGCTCGTATTCTGGATCGCTGACCACCCCTCCGTGTACTG
AAGGCGTCACATGGTTCATGTCCATGAACATATTGTCCATCTCGAAGCGA
CAGGTGCATGAGTACTCGCTCACGGCTGGAACTAGTATTGATGGCAACAA
CCGACCAGTGAAGCCTCTGAACGAGCGTCCCGTCACATGTTATGTGGCGT
AA

Coding sequence (CDS) from alignment at tig00004433_pilon:625536..626387+

>Gchil1340.t1 ID=Gchil1340.t1|Name=Gchil1340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00004433_pilon:625536..626387+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTGTTTACAGTTTTCGTAGCTCTGCTCTTCACCATTTCCGTGCT
GGGCGACGAAGAACTCGAGGTTGATTCGTCAGGGTGTGCGGTGAAATCGG
CCGTTGGCAACTTTGCTTACGATATCACATTACCGAACAACCCGTCCAAC
TGGGGAAACATCAAGGAAGAATTCGCTACTTGCAAAGATGGTGACAGTCA
GTCGCCGATCAACTTCCCGGTCGCGTTCCAATACGCTCCGAGGGCCGCCG
GTCCTAAACCGATGATGAACATTGCAAATATGACATTCGGAGCAAGTTCG
TACAATTGGGCCATGTCTTGCAGCGATGAATCGGGTTCCTGCGGTACCAC
TACCTTCAACGGCAAAACTTTCGAGCTTATCAACGTACATTTCCACTCGC
CCAGTGAGCACAAGCTGTACGGCAAGCAATATCCGTTGGAATGCCACATG
GTGCACGCCGCTGAGGACGGCTCGCTGGCCGTCATTGGCATTATGTTCGA
CTACGCCGGTGAGACCTCGTACCCCGCTCGCATCTATCATAGGGTCACCC
CCGAGTACGGAGACAACCGCGTTCTCGCCACTGTGCTGGACGGTGTGAAG
ACAGATCGCGTGGAATGGTCCATTCCCGTGGGTCAACTTGTGGACCATAA
CAAGGGTTACTGCTCGTATTCTGGATCGCTGACCACCCCTCCGTGTACTG
AAGGCGTCACATGGTTCATGTCCATGAACATATTGTCCATCTCGAAGCGA
CAGGTGCATGAGTACTCGCTCACGGCTGGAACTAGTATTGATGGCAACAA
CCGACCAGTGAAGCCTCTGAACGAGCGTCCCGTCACATGTTATGTGGCGT
AA