Gchil1339.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1339.t1
Unique NameGchil1339.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:622826..623296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122179.KB890414_gene1777
PFAMsAn_peroxidase
Max annot lvl976|Bacteroidetes
Evalue7.57e-14
EggNOG OGsCOG2931@1|root,COG3210@1|root,COG2931@2|Bacteria,COG3210@2|Bacteria,4NIKN@976|Bacteroidetes
DescriptionAnimal haem peroxidase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1339Gchil1339Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 622826..623296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1339.t1.stop1Gchil1339.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 622826..622828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1339.t1.CDS1Gchil1339.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 622826..623296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1339.t1.exon1Gchil1339.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 622826..623296 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1339.t1.start1Gchil1339.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 623294..623296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1339.t1Gchil1339.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 622826..623296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1339.t1 ID=Gchil1339.t1|Name=Gchil1339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MSSVLPIGEDLPSPRLISNIVSEQEGVTINSFGLSELFIFFGQFIDQDFA
LSPFEGAGEELDIEVPENDPLLATSSLQFIRSTRALVNDSSSVERPITML
SSALDLSSVYGVDEERNEFLRMPNTCRLYISRDNLLPINTVGFVNSPNTF
PAFYWR*
back to top

spliced messenger RNA

>Gchil1339.t1 ID=Gchil1339.t1|Name=Gchil1339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:622826..623296- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCGTACTGCCAATTGGAGAAGATCTCCCGAGCCCACGTCTCAT
TTCTAACATTGTCAGTGAACAGGAAGGTGTCACCATCAATTCTTTTGGGC
TAAGTGAGCTGTTTATCTTCTTTGGGCAGTTCATCGATCAGGATTTTGCA
CTGTCTCCGTTCGAAGGAGCGGGAGAGGAACTGGATATTGAAGTGCCTGA
GAATGATCCGCTTCTTGCCACCTCTTCTTTGCAGTTTATCCGTTCTACCC
GAGCACTTGTGAACGACTCTTCTTCTGTTGAACGTCCCATCACTATGCTT
TCTTCAGCTTTGGATCTTTCCAGCGTCTACGGTGTGGATGAGGAGCGCAA
TGAATTTCTTCGAATGCCGAATACATGCCGTCTCTACATTTCCAGAGATA
ATCTTCTTCCGATCAATACTGTGGGTTTTGTGAACTCACCGAATACATTC
CCTGCTTTTTATTGGAGGTGA
back to top

protein sequence of Gchil1339.t1

>Gchil1339.t1 ID=Gchil1339.t1|Name=Gchil1339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MSSVLPIGEDLPSPRLISNIVSEQEGVTINSFGLSELFIFFGQFIDQDFA
LSPFEGAGEELDIEVPENDPLLATSSLQFIRSTRALVNDSSSVERPITML
SSALDLSSVYGVDEERNEFLRMPNTCRLYISRDNLLPINTVGFVNSPNTF
PAFYWR*
back to top

mRNA from alignment at tig00004433_pilon:622826..623296-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1339.t1 ID=Gchil1339.t1|Name=Gchil1339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:622826..623296- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCGTACTGCCAATTGGAGAAGATCTCCCGAGCCCACGTCTCAT
TTCTAACATTGTCAGTGAACAGGAAGGTGTCACCATCAATTCTTTTGGGC
TAAGTGAGCTGTTTATCTTCTTTGGGCAGTTCATCGATCAGGATTTTGCA
CTGTCTCCGTTCGAAGGAGCGGGAGAGGAACTGGATATTGAAGTGCCTGA
GAATGATCCGCTTCTTGCCACCTCTTCTTTGCAGTTTATCCGTTCTACCC
GAGCACTTGTGAACGACTCTTCTTCTGTTGAACGTCCCATCACTATGCTT
TCTTCAGCTTTGGATCTTTCCAGCGTCTACGGTGTGGATGAGGAGCGCAA
TGAATTTCTTCGAATGCCGAATACATGCCGTCTCTACATTTCCAGAGATA
ATCTTCTTCCGATCAATACTGTGGGTTTTGTGAACTCACCGAATACATTC
CCTGCTTTTTATTGGAGGTGA
back to top

Coding sequence (CDS) from alignment at tig00004433_pilon:622826..623296-

>Gchil1339.t1 ID=Gchil1339.t1|Name=Gchil1339.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:622826..623296- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCGTACTGCCAATTGGAGAAGATCTCCCGAGCCCACGTCTCAT
TTCTAACATTGTCAGTGAACAGGAAGGTGTCACCATCAATTCTTTTGGGC
TAAGTGAGCTGTTTATCTTCTTTGGGCAGTTCATCGATCAGGATTTTGCA
CTGTCTCCGTTCGAAGGAGCGGGAGAGGAACTGGATATTGAAGTGCCTGA
GAATGATCCGCTTCTTGCCACCTCTTCTTTGCAGTTTATCCGTTCTACCC
GAGCACTTGTGAACGACTCTTCTTCTGTTGAACGTCCCATCACTATGCTT
TCTTCAGCTTTGGATCTTTCCAGCGTCTACGGTGTGGATGAGGAGCGCAA
TGAATTTCTTCGAATGCCGAATACATGCCGTCTCTACATTTCCAGAGATA
ATCTTCTTCCGATCAATACTGTGGGTTTTGTGAACTCACCGAATACATTC
CCTGCTTTTTATTGGAGGTGA
back to top