Gchil1336.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1336.t1
Unique NameGchil1336.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:485267..486001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10160.XP_004637630.1
Preferred namePRDM14
PFAMsSET,zf-C2H2,zf-C2H2_6
Max annot lvl33208|Metazoa
GOsGO:0000003,GO:0000122,GO:0000902,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001227,GO:0001701,GO:0001708,GO:0001824,GO:0001825,GO:0001826,GO:0001827,GO:0001894,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007549,GO:0007565,GO:0007566,GO:0008150,GO:0008152,GO:0008213,GO:0009048,GO:0009566,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031490,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0034969,GO:0034972,GO:0035019,GO:0036211,GO:0040012,GO:0040017,GO:0040029,GO:0040036,GO:0040037,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044030,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045165,GO:0045892,GO:0045934,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051272,GO:0051276,GO:0051704,GO:0060249,GO:0060255,GO:0060817,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090287,GO:0090288,GO:0097159,GO:0098727,GO:0140110,GO:1901317,GO:1901363,GO:1901564,GO:1902093,GO:1902459,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000036,GO:2000112,GO:2000113,GO:2000145,GO:2000147,GO:2001141
Evalue1.61e-05
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,39MBQ@33154|Opisthokonta,3CNYT@33208|Metazoa,3E52E@33213|Bilateria,48RPX@7711|Chordata,492S5@7742|Vertebrata,3J7XP@40674|Mammalia,35H12@314146|Euarchontoglires,4Q2A6@9989|Rodentia
DescriptionPR domain zinc finger protein
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1336Gchil1336Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 485267..486001 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1336.t1.start1Gchil1336.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 485267..485269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1336.t1.CDS1Gchil1336.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 485267..486001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1336.t1.exon1Gchil1336.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 485267..486001 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1336.t1.stop1Gchil1336.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 485999..486001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1336.t1Gchil1336.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 485267..486001 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1336.t1 ID=Gchil1336.t1|Name=Gchil1336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MNGHPHGHGHQHGQQRKSSTSRYWDDVMSIPGPPRSIPRNPPDLPHASSS
SAPPPAAPPAFYQPAPLYHHPHQLPHQHPHQHPHQYPHQLPSQHQHQLPS
QHQHQLPSQHQHQLPSQHHHQLPSQHHHQQPYQSPHQHPMQPFSMPGPTP
MEISKPPKPPRSSSSSSRTRSTRQFKCPQCLSLFERRGHLDAHVETVHEG
KRPHNCPHNCGKMFGHRSSLSRHVKSSHENPTTPSASKSRKKHY*
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spliced messenger RNA

>Gchil1336.t1 ID=Gchil1336.t1|Name=Gchil1336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004433_pilon:485267..486001+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTCATCCGCATGGCCATGGCCATCAGCACGGCCAGCAGCGAAA
GAGCTCAACCTCCCGCTACTGGGACGACGTCATGTCAATTCCCGGCCCGC
CGCGCTCCATACCGCGCAACCCGCCCGACCTTCCCCACGCCTCCTCGTCG
TCCGCGCCCCCGCCCGCTGCCCCGCCCGCTTTCTACCAGCCCGCCCCGCT
GTACCACCACCCCCACCAACTTCCGCATCAACATCCGCATCAACATCCGC
ACCAATATCCGCACCAACTTCCCTCACAGCATCAGCACCAACTTCCCTCC
CAACATCAGCACCAACTTCCCTCCCAACATCAGCACCAACTTCCCTCACA
ACATCACCATCAACTTCCCTCCCAACATCACCACCAACAGCCCTACCAAT
CCCCGCACCAGCACCCCATGCAGCCCTTCTCCATGCCCGGGCCAACGCCC
ATGGAAATTTCAAAGCCGCCTAAGCCGCCGAGAAGTTCCTCGAGCTCGTC
ACGTACCCGTTCCACCCGCCAGTTTAAGTGCCCACAGTGCCTTTCGCTGT
TCGAGCGACGTGGCCACTTAGATGCGCACGTCGAGACCGTGCACGAGGGT
AAGCGCCCGCACAATTGTCCGCACAATTGCGGTAAGATGTTTGGCCATCG
CTCCTCGCTCAGCAGACATGTGAAGAGTTCCCACGAAAATCCTACTACGC
CGTCCGCCTCCAAATCCAGGAAGAAGCATTATTAA
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protein sequence of Gchil1336.t1

>Gchil1336.t1 ID=Gchil1336.t1|Name=Gchil1336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MNGHPHGHGHQHGQQRKSSTSRYWDDVMSIPGPPRSIPRNPPDLPHASSS
SAPPPAAPPAFYQPAPLYHHPHQLPHQHPHQHPHQYPHQLPSQHQHQLPS
QHQHQLPSQHQHQLPSQHHHQLPSQHHHQQPYQSPHQHPMQPFSMPGPTP
MEISKPPKPPRSSSSSSRTRSTRQFKCPQCLSLFERRGHLDAHVETVHEG
KRPHNCPHNCGKMFGHRSSLSRHVKSSHENPTTPSASKSRKKHY*
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mRNA from alignment at tig00004433_pilon:485267..486001+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1336.t1 ID=Gchil1336.t1|Name=Gchil1336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004433_pilon:485267..486001+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGTCATCCGCATGGCCATGGCCATCAGCACGGCCAGCAGCGAAA
GAGCTCAACCTCCCGCTACTGGGACGACGTCATGTCAATTCCCGGCCCGC
CGCGCTCCATACCGCGCAACCCGCCCGACCTTCCCCACGCCTCCTCGTCG
TCCGCGCCCCCGCCCGCTGCCCCGCCCGCTTTCTACCAGCCCGCCCCGCT
GTACCACCACCCCCACCAACTTCCGCATCAACATCCGCATCAACATCCGC
ACCAATATCCGCACCAACTTCCCTCACAGCATCAGCACCAACTTCCCTCC
CAACATCAGCACCAACTTCCCTCCCAACATCAGCACCAACTTCCCTCACA
ACATCACCATCAACTTCCCTCCCAACATCACCACCAACAGCCCTACCAAT
CCCCGCACCAGCACCCCATGCAGCCCTTCTCCATGCCCGGGCCAACGCCC
ATGGAAATTTCAAAGCCGCCTAAGCCGCCGAGAAGTTCCTCGAGCTCGTC
ACGTACCCGTTCCACCCGCCAGTTTAAGTGCCCACAGTGCCTTTCGCTGT
TCGAGCGACGTGGCCACTTAGATGCGCACGTCGAGACCGTGCACGAGGGT
AAGCGCCCGCACAATTGTCCGCACAATTGCGGTAAGATGTTTGGCCATCG
CTCCTCGCTCAGCAGACATGTGAAGAGTTCCCACGAAAATCCTACTACGC
CGTCCGCCTCCAAATCCAGGAAGAAGCATTATTAA
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Coding sequence (CDS) from alignment at tig00004433_pilon:485267..486001+

>Gchil1336.t1 ID=Gchil1336.t1|Name=Gchil1336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00004433_pilon:485267..486001+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGTCATCCGCATGGCCATGGCCATCAGCACGGCCAGCAGCGAAA
GAGCTCAACCTCCCGCTACTGGGACGACGTCATGTCAATTCCCGGCCCGC
CGCGCTCCATACCGCGCAACCCGCCCGACCTTCCCCACGCCTCCTCGTCG
TCCGCGCCCCCGCCCGCTGCCCCGCCCGCTTTCTACCAGCCCGCCCCGCT
GTACCACCACCCCCACCAACTTCCGCATCAACATCCGCATCAACATCCGC
ACCAATATCCGCACCAACTTCCCTCACAGCATCAGCACCAACTTCCCTCC
CAACATCAGCACCAACTTCCCTCCCAACATCAGCACCAACTTCCCTCACA
ACATCACCATCAACTTCCCTCCCAACATCACCACCAACAGCCCTACCAAT
CCCCGCACCAGCACCCCATGCAGCCCTTCTCCATGCCCGGGCCAACGCCC
ATGGAAATTTCAAAGCCGCCTAAGCCGCCGAGAAGTTCCTCGAGCTCGTC
ACGTACCCGTTCCACCCGCCAGTTTAAGTGCCCACAGTGCCTTTCGCTGT
TCGAGCGACGTGGCCACTTAGATGCGCACGTCGAGACCGTGCACGAGGGT
AAGCGCCCGCACAATTGTCCGCACAATTGCGGTAAGATGTTTGGCCATCG
CTCCTCGCTCAGCAGACATGTGAAGAGTTCCCACGAAAATCCTACTACGC
CGTCCGCCTCCAAATCCAGGAAGAAGCATTATTAA
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