Gchil1331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1331.t1
Unique NameGchil1331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:353257..354766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX81178
Max annot lvl33208|Metazoa
Evalue4.03e-09
EggNOG OGs2CMUJ@1|root,2QS0X@2759|Eukaryota,39VGF@33154|Opisthokonta,3C21T@33208|Metazoa,3E4IW@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1331Gchil1331Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 353257..354766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1Gchil1331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 353257..354766 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1.start1Gchil1331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 353257..353259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1.CDS1Gchil1331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 353257..353393 +
Gchil1331.t1.CDS2Gchil1331.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 353496..353702 +
Gchil1331.t1.CDS3Gchil1331.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 353808..354104 +
Gchil1331.t1.CDS4Gchil1331.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 354370..354766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1.exon1Gchil1331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 353257..353393 +
Gchil1331.t1.exon2Gchil1331.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 353496..353702 +
Gchil1331.t1.exon3Gchil1331.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 353808..354104 +
Gchil1331.t1.exon4Gchil1331.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 354370..354766 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1.intron1Gchil1331.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 353394..353495 +
Gchil1331.t1.intron2Gchil1331.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 353703..353807 +
Gchil1331.t1.intron3Gchil1331.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 354105..354369 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1331.t1.stop1Gchil1331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 354764..354766 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1331.t1 ID=Gchil1331.t1|Name=Gchil1331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=346bp
MFYVHDEESQSILRNHVYVDQVLEACNEQVAGSVLACIEALLEQIKAGVA
IEQYVFTETQDGKGLIDAHFSKVSKHYEMYLQTARDVSISTEPFEALKCA
GGIHNSVPQMSRPKIALPCPTDALSRSSIKYSIEVRVYSGIDKAMRLSIR
LENGDWNVQSVGSVPFDADCAPIHSPVSEEDGSSSDNSDTLGAGNKVAVF
WCLYYTALRCRKHWEDMKEMLEEGVGDRSKMKSPSAMLEALQQKYPDRYC
LPGEEELNAEIYKFFKRQKDEKALQTAPRGVLEIYAVSLRLWIEKDRNLK
LARGFSKLKKTNSGANDVLPSDLPTDNQVKGKVSSSKASLKKVDR*
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spliced messenger RNA

>Gchil1331.t1 ID=Gchil1331.t1|Name=Gchil1331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00004433_pilon:353257..354766+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTACGTCCACGATGAAGAATCGCAGAGTATTCTTCGTAATCACGT
TTATGTCGACCAAGTTCTGGAAGCGTGCAACGAGCAGGTTGCTGGGAGCG
TTTTAGCCTGTATTGAGGCCTTGCTCGAGCAGATCAAGGCTGGAGTTGCG
ATTGAACAGTACGTGTTCACGGAGACACAGGATGGAAAGGGTTTGATCGA
TGCTCATTTTTCAAAAGTCTCAAAGCACTACGAAATGTATTTACAAACCG
CAAGAGATGTGTCCATCTCTACTGAGCCGTTCGAAGCGTTGAAGTGTGCA
GGAGGCATCCATAACAGCGTTCCACAGATGAGCCGCCCAAAGATTGCGCT
GCCGTGCCCGACAGATGCGCTGTCGAGATCGTCAATCAAATATTCAATAG
AAGTGCGTGTCTACTCTGGTATTGACAAGGCGATGCGCCTGAGCATTCGG
CTAGAAAACGGGGATTGGAACGTGCAGAGTGTCGGTTCTGTTCCATTTGA
TGCTGATTGTGCGCCGATTCACAGCCCCGTAAGTGAAGAAGATGGTAGTT
CAAGCGATAACAGCGACACCTTGGGTGCTGGAAACAAAGTCGCTGTTTTC
TGGTGTTTGTATTATACGGCGCTCCGGTGTCGGAAACATTGGGAGGACAT
GAAAGAGATGTTAGAGGAAGGTGTTGGTGATAGAAGTAAGATGAAATCCC
CTTCCGCGATGCTTGAGGCACTACAGCAGAAGTACCCAGACCGGTATTGT
CTCCCAGGCGAGGAAGAGCTAAATGCAGAGATTTATAAGTTCTTCAAGCG
CCAGAAGGATGAAAAGGCACTTCAGACAGCTCCTCGTGGTGTCCTGGAGA
TCTACGCTGTCTCTCTCCGTCTATGGATCGAGAAAGATCGCAACTTGAAG
CTGGCGAGAGGGTTTTCAAAGCTGAAAAAGACTAATAGCGGGGCAAACGA
TGTGCTTCCGAGCGACTTACCGACTGACAATCAGGTAAAGGGCAAGGTTA
GCAGTAGCAAAGCTTCTCTGAAGAAGGTAGACCGATAA
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protein sequence of Gchil1331.t1

>Gchil1331.t1 ID=Gchil1331.t1|Name=Gchil1331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=346bp
MFYVHDEESQSILRNHVYVDQVLEACNEQVAGSVLACIEALLEQIKAGVA
IEQYVFTETQDGKGLIDAHFSKVSKHYEMYLQTARDVSISTEPFEALKCA
GGIHNSVPQMSRPKIALPCPTDALSRSSIKYSIEVRVYSGIDKAMRLSIR
LENGDWNVQSVGSVPFDADCAPIHSPVSEEDGSSSDNSDTLGAGNKVAVF
WCLYYTALRCRKHWEDMKEMLEEGVGDRSKMKSPSAMLEALQQKYPDRYC
LPGEEELNAEIYKFFKRQKDEKALQTAPRGVLEIYAVSLRLWIEKDRNLK
LARGFSKLKKTNSGANDVLPSDLPTDNQVKGKVSSSKASLKKVDR*
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mRNA from alignment at tig00004433_pilon:353257..354766+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1331.t1 ID=Gchil1331.t1|Name=Gchil1331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1510bp|location=Sequence derived from alignment at tig00004433_pilon:353257..354766+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTACGTCCACGATGAAGAATCGCAGAGTATTCTTCGTAATCACGT
TTATGTCGACCAAGTTCTGGAAGCGTGCAACGAGCAGGTTGCTGGGAGCG
TTTTAGCCTGTATTGAGGCCTTGCTCGAGCAGATCAAGTAATCAGTGCCT
TTCTTGTCCCGCGTTGGTTTGCAATCGGATAACGCCGGGTGCTATTTGTC
TGATCTTCTGCTCACATTGCTCCCTATCGTTGGAGAAAGGGCTGGAGTTG
CGATTGAACAGTACGTGTTCACGGAGACACAGGATGGAAAGGGTTTGATC
GATGCTCATTTTTCAAAAGTCTCAAAGCACTACGAAATGTATTTACAAAC
CGCAAGAGATGTGTCCATCTCTACTGAGCCGTTCGAAGCGTTGAAGTGTG
CAGGAGGCATCCATAACAGCGTTCCACAGATGAGCCGCCCAAAGATGTAA
GACCTATCTTCCGATCGGGACACTTTTATCACTACGGTTGGTACAAAAGT
CTGATGTGTGAATGAAGCCTCTTTCGCTGTCACGGAGACCTCTTGTGGCA
GTGCGCTGCCGTGCCCGACAGATGCGCTGTCGAGATCGTCAATCAAATAT
TCAATAGAAGTGCGTGTCTACTCTGGTATTGACAAGGCGATGCGCCTGAG
CATTCGGCTAGAAAACGGGGATTGGAACGTGCAGAGTGTCGGTTCTGTTC
CATTTGATGCTGATTGTGCGCCGATTCACAGCCCCGTAAGTGAAGAAGAT
GGTAGTTCAAGCGATAACAGCGACACCTTGGGTGCTGGAAACAAAGTCGC
TGTTTTCTGGTGTTTGTATTATACGGCGCTCCGGTGTCGGAAACATTGGT
GCCTCAGCTCAGTCAGCTGCGACAAATAGGATGTCCAAAACCGCTAAAGA
TATTTAAGTTGACCCTAAAAGGTGTGATGTCGTTGCCTATGCCATACAGA
AGTCAAACGAATTCCTTCATTCCAATGTCGTCATTCGAGACGGTACACAG
GACATGTTTGAGTACCACCTCGCCTCCCGTGAAGTCGTGACTGAAGCACA
AGGCTGTGCGCGTCATCCTCTTCATAGCTAATGCTACGGTGCTACTTACA
TTGCGTCGTATAGGGAGGACATGAAAGAGATGTTAGAGGAAGGTGTTGGT
GATAGAAGTAAGATGAAATCCCCTTCCGCGATGCTTGAGGCACTACAGCA
GAAGTACCCAGACCGGTATTGTCTCCCAGGCGAGGAAGAGCTAAATGCAG
AGATTTATAAGTTCTTCAAGCGCCAGAAGGATGAAAAGGCACTTCAGACA
GCTCCTCGTGGTGTCCTGGAGATCTACGCTGTCTCTCTCCGTCTATGGAT
CGAGAAAGATCGCAACTTGAAGCTGGCGAGAGGGTTTTCAAAGCTGAAAA
AGACTAATAGCGGGGCAAACGATGTGCTTCCGAGCGACTTACCGACTGAC
AATCAGGTAAAGGGCAAGGTTAGCAGTAGCAAAGCTTCTCTGAAGAAGGT
AGACCGATAA
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Coding sequence (CDS) from alignment at tig00004433_pilon:353257..354766+

>Gchil1331.t1 ID=Gchil1331.t1|Name=Gchil1331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00004433_pilon:353257..354766+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTACGTCCACGATGAAGAATCGCAGAGTATTCTTCGTAATCACGT
TTATGTCGACCAAGTTCTGGAAGCGTGCAACGAGCAGGTTGCTGGGAGCG
TTTTAGCCTGTATTGAGGCCTTGCTCGAGCAGATCAAGGCTGGAGTTGCG
ATTGAACAGTACGTGTTCACGGAGACACAGGATGGAAAGGGTTTGATCGA
TGCTCATTTTTCAAAAGTCTCAAAGCACTACGAAATGTATTTACAAACCG
CAAGAGATGTGTCCATCTCTACTGAGCCGTTCGAAGCGTTGAAGTGTGCA
GGAGGCATCCATAACAGCGTTCCACAGATGAGCCGCCCAAAGATTGCGCT
GCCGTGCCCGACAGATGCGCTGTCGAGATCGTCAATCAAATATTCAATAG
AAGTGCGTGTCTACTCTGGTATTGACAAGGCGATGCGCCTGAGCATTCGG
CTAGAAAACGGGGATTGGAACGTGCAGAGTGTCGGTTCTGTTCCATTTGA
TGCTGATTGTGCGCCGATTCACAGCCCCGTAAGTGAAGAAGATGGTAGTT
CAAGCGATAACAGCGACACCTTGGGTGCTGGAAACAAAGTCGCTGTTTTC
TGGTGTTTGTATTATACGGCGCTCCGGTGTCGGAAACATTGGGAGGACAT
GAAAGAGATGTTAGAGGAAGGTGTTGGTGATAGAAGTAAGATGAAATCCC
CTTCCGCGATGCTTGAGGCACTACAGCAGAAGTACCCAGACCGGTATTGT
CTCCCAGGCGAGGAAGAGCTAAATGCAGAGATTTATAAGTTCTTCAAGCG
CCAGAAGGATGAAAAGGCACTTCAGACAGCTCCTCGTGGTGTCCTGGAGA
TCTACGCTGTCTCTCTCCGTCTATGGATCGAGAAAGATCGCAACTTGAAG
CTGGCGAGAGGGTTTTCAAAGCTGAAAAAGACTAATAGCGGGGCAAACGA
TGTGCTTCCGAGCGACTTACCGACTGACAATCAGGTAAAGGGCAAGGTTA
GCAGTAGCAAAGCTTCTCTGAAGAAGGTAGACCGATAA
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