Gchil1330.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1330.t1
Unique NameGchil1330.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:346539..347615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1330Gchil1330Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 346539..347615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1330.t1.stop1Gchil1330.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 346539..346541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1330.t1.CDS1Gchil1330.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 346539..347615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1330.t1.exon1Gchil1330.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 346539..347615 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1330.t1.start1Gchil1330.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 347613..347615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1330.t1Gchil1330.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 346539..347615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1330.t1 ID=Gchil1330.t1|Name=Gchil1330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MRQPAADAALSHPLEFASAPALVLHSRSSTRVTSNHHARPRPAHLPPRTA
AAPAAPAAPNAPAAPAAPAAPAAPAAPAAPAAPATPKKPRAWTVFRRSSS
TLAAAFSSERSAVQPPRIASQAEFRRSFLRLNRHRLLHDVDGHCFRLHPI
VMNGDCGFASIAKGINHARHNMPPARHAPTSNPPSPSAQPPTPPQQTHSS
SPRFSRSRLRRSLPRLWRKSQNTHHSNKRTLYAKDIRSAMFHEIRKAKKT
YLADRDTFGAVFTDHDFDRLQRDVGTPGIAGHWLGTVLGVLEHVIIAHAM
NVNIFLYQFDLQRQSIRRFESATVHNPDCNVYLFFTGPATSGHFDTLVKI
SNDVMFTA*
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spliced messenger RNA

>Gchil1330.t1 ID=Gchil1330.t1|Name=Gchil1330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004433_pilon:346539..347615- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAACCCGCCGCCGATGCCGCGCTATCGCACCCGCTGGAGTTCGC
CTCCGCCCCCGCGCTGGTGCTTCATTCGCGCTCCTCCACCCGCGTCACCA
GCAACCACCACGCCCGCCCGCGCCCCGCCCACCTCCCTCCTCGCACCGCC
GCCGCTCCCGCCGCTCCCGCCGCTCCCAACGCTCCTGCCGCTCCCGCCGC
TCCTGCCGCTCCTGCTGCTCCCGCCGCTCCCGCCGCTCCCGCCGCTCCCG
CCACCCCCAAGAAGCCGCGCGCCTGGACTGTCTTTCGAAGAAGCTCCAGT
ACCTTGGCCGCCGCCTTCTCCTCGGAACGCTCGGCCGTGCAACCGCCGCG
CATTGCATCGCAGGCCGAGTTTCGCCGCTCCTTCTTGCGCCTCAACCGTC
ACCGCCTGCTTCACGACGTCGATGGCCACTGCTTTCGCTTGCACCCTATC
GTCATGAACGGCGACTGTGGCTTTGCCTCCATTGCCAAGGGCATCAATCA
TGCGCGTCACAACATGCCTCCAGCGCGCCACGCGCCCACATCCAACCCAC
CATCACCATCCGCACAACCACCAACACCGCCGCAACAAACCCACTCTTCC
TCCCCGCGCTTCAGCCGCTCGCGTCTTCGCCGCTCCTTACCTCGTCTGTG
GCGCAAATCTCAAAACACCCATCACTCCAACAAGCGCACCTTGTACGCAA
AGGACATACGAAGCGCCATGTTCCATGAGATCCGAAAGGCAAAGAAAACC
TATCTAGCCGACCGTGACACTTTCGGTGCCGTCTTCACCGACCACGACTT
CGACCGACTTCAGCGCGATGTCGGCACCCCGGGCATTGCTGGCCACTGGC
TGGGTACCGTTCTCGGCGTGCTTGAGCACGTCATAATCGCACACGCAATG
AACGTCAACATTTTCCTCTATCAGTTTGACTTGCAGCGTCAGAGCATACG
CCGATTTGAGAGCGCTACTGTCCACAACCCCGATTGTAATGTCTACCTCT
TCTTCACTGGACCGGCCACCAGTGGTCATTTTGACACATTGGTCAAGATT
TCGAACGACGTCATGTTCACTGCCTAA
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protein sequence of Gchil1330.t1

>Gchil1330.t1 ID=Gchil1330.t1|Name=Gchil1330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MRQPAADAALSHPLEFASAPALVLHSRSSTRVTSNHHARPRPAHLPPRTA
AAPAAPAAPNAPAAPAAPAAPAAPAAPAAPAAPATPKKPRAWTVFRRSSS
TLAAAFSSERSAVQPPRIASQAEFRRSFLRLNRHRLLHDVDGHCFRLHPI
VMNGDCGFASIAKGINHARHNMPPARHAPTSNPPSPSAQPPTPPQQTHSS
SPRFSRSRLRRSLPRLWRKSQNTHHSNKRTLYAKDIRSAMFHEIRKAKKT
YLADRDTFGAVFTDHDFDRLQRDVGTPGIAGHWLGTVLGVLEHVIIAHAM
NVNIFLYQFDLQRQSIRRFESATVHNPDCNVYLFFTGPATSGHFDTLVKI
SNDVMFTA*
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mRNA from alignment at tig00004433_pilon:346539..347615-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1330.t1 ID=Gchil1330.t1|Name=Gchil1330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004433_pilon:346539..347615- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCAACCCGCCGCCGATGCCGCGCTATCGCACCCGCTGGAGTTCGC
CTCCGCCCCCGCGCTGGTGCTTCATTCGCGCTCCTCCACCCGCGTCACCA
GCAACCACCACGCCCGCCCGCGCCCCGCCCACCTCCCTCCTCGCACCGCC
GCCGCTCCCGCCGCTCCCGCCGCTCCCAACGCTCCTGCCGCTCCCGCCGC
TCCTGCCGCTCCTGCTGCTCCCGCCGCTCCCGCCGCTCCCGCCGCTCCCG
CCACCCCCAAGAAGCCGCGCGCCTGGACTGTCTTTCGAAGAAGCTCCAGT
ACCTTGGCCGCCGCCTTCTCCTCGGAACGCTCGGCCGTGCAACCGCCGCG
CATTGCATCGCAGGCCGAGTTTCGCCGCTCCTTCTTGCGCCTCAACCGTC
ACCGCCTGCTTCACGACGTCGATGGCCACTGCTTTCGCTTGCACCCTATC
GTCATGAACGGCGACTGTGGCTTTGCCTCCATTGCCAAGGGCATCAATCA
TGCGCGTCACAACATGCCTCCAGCGCGCCACGCGCCCACATCCAACCCAC
CATCACCATCCGCACAACCACCAACACCGCCGCAACAAACCCACTCTTCC
TCCCCGCGCTTCAGCCGCTCGCGTCTTCGCCGCTCCTTACCTCGTCTGTG
GCGCAAATCTCAAAACACCCATCACTCCAACAAGCGCACCTTGTACGCAA
AGGACATACGAAGCGCCATGTTCCATGAGATCCGAAAGGCAAAGAAAACC
TATCTAGCCGACCGTGACACTTTCGGTGCCGTCTTCACCGACCACGACTT
CGACCGACTTCAGCGCGATGTCGGCACCCCGGGCATTGCTGGCCACTGGC
TGGGTACCGTTCTCGGCGTGCTTGAGCACGTCATAATCGCACACGCAATG
AACGTCAACATTTTCCTCTATCAGTTTGACTTGCAGCGTCAGAGCATACG
CCGATTTGAGAGCGCTACTGTCCACAACCCCGATTGTAATGTCTACCTCT
TCTTCACTGGACCGGCCACCAGTGGTCATTTTGACACATTGGTCAAGATT
TCGAACGACGTCATGTTCACTGCCTAA
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Coding sequence (CDS) from alignment at tig00004433_pilon:346539..347615-

>Gchil1330.t1 ID=Gchil1330.t1|Name=Gchil1330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00004433_pilon:346539..347615- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCAACCCGCCGCCGATGCCGCGCTATCGCACCCGCTGGAGTTCGC
CTCCGCCCCCGCGCTGGTGCTTCATTCGCGCTCCTCCACCCGCGTCACCA
GCAACCACCACGCCCGCCCGCGCCCCGCCCACCTCCCTCCTCGCACCGCC
GCCGCTCCCGCCGCTCCCGCCGCTCCCAACGCTCCTGCCGCTCCCGCCGC
TCCTGCCGCTCCTGCTGCTCCCGCCGCTCCCGCCGCTCCCGCCGCTCCCG
CCACCCCCAAGAAGCCGCGCGCCTGGACTGTCTTTCGAAGAAGCTCCAGT
ACCTTGGCCGCCGCCTTCTCCTCGGAACGCTCGGCCGTGCAACCGCCGCG
CATTGCATCGCAGGCCGAGTTTCGCCGCTCCTTCTTGCGCCTCAACCGTC
ACCGCCTGCTTCACGACGTCGATGGCCACTGCTTTCGCTTGCACCCTATC
GTCATGAACGGCGACTGTGGCTTTGCCTCCATTGCCAAGGGCATCAATCA
TGCGCGTCACAACATGCCTCCAGCGCGCCACGCGCCCACATCCAACCCAC
CATCACCATCCGCACAACCACCAACACCGCCGCAACAAACCCACTCTTCC
TCCCCGCGCTTCAGCCGCTCGCGTCTTCGCCGCTCCTTACCTCGTCTGTG
GCGCAAATCTCAAAACACCCATCACTCCAACAAGCGCACCTTGTACGCAA
AGGACATACGAAGCGCCATGTTCCATGAGATCCGAAAGGCAAAGAAAACC
TATCTAGCCGACCGTGACACTTTCGGTGCCGTCTTCACCGACCACGACTT
CGACCGACTTCAGCGCGATGTCGGCACCCCGGGCATTGCTGGCCACTGGC
TGGGTACCGTTCTCGGCGTGCTTGAGCACGTCATAATCGCACACGCAATG
AACGTCAACATTTTCCTCTATCAGTTTGACTTGCAGCGTCAGAGCATACG
CCGATTTGAGAGCGCTACTGTCCACAACCCCGATTGTAATGTCTACCTCT
TCTTCACTGGACCGGCCACCAGTGGTCATTTTGACACATTGGTCAAGATT
TCGAACGACGTCATGTTCACTGCCTAA
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