Gchil1329.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1329.t1
Unique Name	Gchil1329.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	180

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:344655..345194 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002586608.1
Preferred name	UBE2M
PFAMs	UQ_con
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10579
KEGG Pathway	ko04120,map04120
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
Evalue	4.86e-71
EggNOG OGs	KOG0420@1\|root,KOG0420@2759\|Eukaryota,38GRW@33154\|Opisthokonta,3BGX6@33208\|Metazoa,3CRHA@33213\|Bilateria,47ZFU@7711\|Chordata
Description	NEDD8 transferase activity
COG category	O
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1329	Gchil1329	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 344655..345194 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1329.t1.start1	Gchil1329.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 344655..344657 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1329.t1.CDS1	Gchil1329.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 344655..345194 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1329.t1.exon1	Gchil1329.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 344655..345194 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1329.t1.stop1	Gchil1329.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 345192..345194 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1329.t1	Gchil1329.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 344655..345194 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:344655..345194+
coding sequence from alignment at tig00004433_pilon:344655..345194+

mRNA sequence

>Gchil1329.t1 ID=Gchil1329.t1|Name=Gchil1329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=180bp
MFRLSQEVKETRIRRESGAKIPKAGHIRVQKDINELDIPPSMNVSFPDPD
DIMNFNVALSPEEGYYHTGTFYFSVSVPEDYPHKPPKVKCSTLVYHPNID
LDGNVCLNILRQDWKPVLSLSSILYGLQLLFLEPNPDDPLNKDAADLLKR
DIHAFQRNVAISMRGGYLAGTYFPCARRR*

spliced messenger RNA

>Gchil1329.t1 ID=Gchil1329.t1|Name=Gchil1329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00004433_pilon:344655..345194+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCTCTCTCAAGAAGTGAAGGAGACGCGAATTCGTCGCGAGTC
CGGCGCCAAGATTCCCAAGGCTGGCCACATCCGCGTCCAGAAGGACATCA
ATGAGCTCGACATCCCTCCCTCCATGAACGTTTCCTTCCCAGACCCAGAT
GACATCATGAATTTCAATGTCGCACTCTCCCCCGAGGAGGGCTACTACCA
CACTGGTACCTTCTATTTCTCTGTTTCCGTGCCCGAGGATTACCCCCACA
AGCCGCCCAAGGTCAAATGCTCCACGCTTGTTTACCACCCGAACATCGAT
CTCGACGGCAACGTGTGCCTAAATATCCTTCGCCAAGACTGGAAGCCTGT
TCTTTCGCTCTCTTCCATTCTCTACGGCCTCCAGCTGCTCTTCCTCGAAC
CCAACCCGGACGACCCGCTCAACAAGGACGCCGCTGACCTGCTCAAGCGC
GACATTCATGCCTTTCAACGCAACGTGGCCATCTCTATGCGGGGTGGTTA
TTTGGCCGGGACTTACTTTCCCTGTGCTCGCCGCCGGTGA

protein sequence of Gchil1329.t1

>Gchil1329.t1 ID=Gchil1329.t1|Name=Gchil1329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MFRLSQEVKETRIRRESGAKIPKAGHIRVQKDINELDIPPSMNVSFPDPD
DIMNFNVALSPEEGYYHTGTFYFSVSVPEDYPHKPPKVKCSTLVYHPNID
LDGNVCLNILRQDWKPVLSLSSILYGLQLLFLEPNPDDPLNKDAADLLKR
DIHAFQRNVAISMRGGYLAGTYFPCARRR*

mRNA from alignment at tig00004433_pilon:344655..345194+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1329.t1 ID=Gchil1329.t1|Name=Gchil1329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00004433_pilon:344655..345194+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCGCCTCTCTCAAGAAGTGAAGGAGACGCGAATTCGTCGCGAGTC
CGGCGCCAAGATTCCCAAGGCTGGCCACATCCGCGTCCAGAAGGACATCA
ATGAGCTCGACATCCCTCCCTCCATGAACGTTTCCTTCCCAGACCCAGAT
GACATCATGAATTTCAATGTCGCACTCTCCCCCGAGGAGGGCTACTACCA
CACTGGTACCTTCTATTTCTCTGTTTCCGTGCCCGAGGATTACCCCCACA
AGCCGCCCAAGGTCAAATGCTCCACGCTTGTTTACCACCCGAACATCGAT
CTCGACGGCAACGTGTGCCTAAATATCCTTCGCCAAGACTGGAAGCCTGT
TCTTTCGCTCTCTTCCATTCTCTACGGCCTCCAGCTGCTCTTCCTCGAAC
CCAACCCGGACGACCCGCTCAACAAGGACGCCGCTGACCTGCTCAAGCGC
GACATTCATGCCTTTCAACGCAACGTGGCCATCTCTATGCGGGGTGGTTA
TTTGGCCGGGACTTACTTTCCCTGTGCTCGCCGCCGGTGA

Coding sequence (CDS) from alignment at tig00004433_pilon:344655..345194+

>Gchil1329.t1 ID=Gchil1329.t1|Name=Gchil1329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00004433_pilon:344655..345194+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCGCCTCTCTCAAGAAGTGAAGGAGACGCGAATTCGTCGCGAGTC
CGGCGCCAAGATTCCCAAGGCTGGCCACATCCGCGTCCAGAAGGACATCA
ATGAGCTCGACATCCCTCCCTCCATGAACGTTTCCTTCCCAGACCCAGAT
GACATCATGAATTTCAATGTCGCACTCTCCCCCGAGGAGGGCTACTACCA
CACTGGTACCTTCTATTTCTCTGTTTCCGTGCCCGAGGATTACCCCCACA
AGCCGCCCAAGGTCAAATGCTCCACGCTTGTTTACCACCCGAACATCGAT
CTCGACGGCAACGTGTGCCTAAATATCCTTCGCCAAGACTGGAAGCCTGT
TCTTTCGCTCTCTTCCATTCTCTACGGCCTCCAGCTGCTCTTCCTCGAAC
CCAACCCGGACGACCCGCTCAACAAGGACGCCGCTGACCTGCTCAAGCGC
GACATTCATGCCTTTCAACGCAACGTGGCCATCTCTATGCGGGGTGGTTA
TTTGGCCGGGACTTACTTTCCCTGTGCTCGCCGCCGGTGA