Gchil1321.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1321.t1
Unique NameGchil1321.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:273837..275492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709000.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue6.03e-138
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1321Gchil1321Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 273837..275492 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1321.t1.start1Gchil1321.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 273837..273839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1321.t1.CDS1Gchil1321.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 273837..275492 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1321.t1.exon1Gchil1321.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 273837..275492 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1321.t1.stop1Gchil1321.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 275490..275492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1321.t1Gchil1321.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 273837..275492 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1321.t1 ID=Gchil1321.t1|Name=Gchil1321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp
MRGQKPPLPRSRTPIKKATGTLHSTEAMGNMLKSKEGDGPIKDSKDIQAS
PVLRSSAKSNVRSSTRTVDVKATSIAQNTLQVVGTRDKYIQWSLLIIAWI
IRFYRLGEPPAVVFDEYHFGTFVDNILSGATHFDIHPPLGKLTLALFGWH
VGYRPDPEFGYDEIGKEYNGVLYYPLREVAAVFGVITVPLMYATARTFGM
SWVGALVCAGLFCFDNLNIIESRLILMDSQITFYLVLSLYCAFKLWKTTP
RTWPRFVWLTVTGFVCGCSISVKWTALATPGLIAIVSFFALHFLEEPLTL
FECAWAGFVGIGWYVALFYIHFRTMTRTGPGTGFFKPDFRATLVGDPSYN
PEAKREAFYKLFAYLNKYMFTANAGITTRHHWESTWYHWIVNWRGLLYYN
KEMDGRWASVYLHCNPIVCIICTASVVIFIMAKLFAVRYRNLKPFKPQTR
VLLSSAMRAGVFLFWGWIINLLPYILVDRSAFVYHYLPGLIYAQLLAGLV
VDQLPISLRIMTMVILMSMVIAVYVRYIPWIYCFPITSEEHQNLRWYGRW
D*
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spliced messenger RNA

>Gchil1321.t1 ID=Gchil1321.t1|Name=Gchil1321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004433_pilon:273837..275492+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGGGCAGAAACCCCCGCTCCCTCGCTCTCGTACACCCATCAAGAA
AGCCACCGGCACCCTGCATTCGACCGAAGCCATGGGTAACATGCTCAAAT
CAAAAGAGGGGGACGGGCCGATAAAAGATTCGAAAGATATCCAGGCGTCG
CCAGTTCTTAGGTCATCTGCGAAATCGAATGTGAGGTCTAGCACTCGTAC
TGTTGACGTGAAGGCCACTTCGATTGCGCAAAATACTCTTCAGGTTGTGG
GCACCCGGGACAAATACATTCAATGGTCGTTGCTAATCATTGCATGGATC
ATTCGATTCTATAGGCTGGGAGAACCGCCCGCGGTAGTTTTCGATGAGTA
CCATTTTGGCACTTTCGTCGACAACATTCTCTCTGGCGCCACTCACTTTG
ATATTCATCCACCACTTGGGAAGCTTACCCTAGCTCTTTTTGGGTGGCAT
GTTGGTTATCGTCCCGATCCCGAATTTGGCTATGATGAGATCGGAAAGGA
GTATAATGGGGTATTGTACTATCCACTGCGCGAAGTTGCCGCCGTGTTCG
GAGTGATCACTGTGCCGCTGATGTATGCCACCGCTCGAACGTTTGGAATG
TCCTGGGTAGGTGCTCTGGTATGTGCGGGGCTATTCTGCTTTGACAATCT
GAACATCATTGAAAGTAGGCTTATCTTAATGGACTCACAGATTACTTTTT
ATCTGGTTCTCTCACTTTACTGTGCCTTTAAATTGTGGAAAACTACACCC
CGTACATGGCCACGCTTTGTTTGGCTCACAGTGACCGGATTTGTTTGTGG
ATGTTCGATAAGTGTGAAGTGGACCGCTTTGGCAACACCTGGTCTCATTG
CCATTGTTTCTTTCTTTGCTCTGCACTTCTTGGAAGAGCCATTGACTTTG
TTCGAATGCGCATGGGCAGGGTTTGTTGGCATAGGTTGGTATGTTGCGCT
TTTTTACATTCATTTTAGAACTATGACCCGTACGGGGCCGGGTACAGGTT
TTTTCAAGCCCGATTTCCGGGCAACCCTCGTAGGGGATCCAAGCTATAAC
CCGGAAGCAAAACGAGAAGCTTTTTACAAGCTGTTCGCTTATTTGAACAA
GTACATGTTCACTGCGAATGCAGGGATAACAACACGGCATCATTGGGAGA
GTACTTGGTATCACTGGATTGTGAACTGGCGGGGACTTCTCTATTATAAC
AAGGAAATGGATGGACGTTGGGCTTCCGTTTATCTTCATTGCAACCCTAT
CGTATGCATTATTTGCACTGCCAGCGTGGTGATATTTATAATGGCAAAGC
TTTTTGCCGTGCGTTACAGAAACCTGAAACCTTTTAAGCCTCAAACTCGA
GTGTTGCTAAGCTCAGCGATGCGCGCTGGTGTGTTTTTATTTTGGGGATG
GATAATCAACTTACTGCCGTACATTCTGGTCGATCGTTCTGCATTTGTGT
ACCATTATCTTCCTGGTTTGATTTATGCGCAACTTCTTGCAGGTCTTGTG
GTCGATCAGCTTCCCATCAGTCTGAGGATCATGACAATGGTCATTCTAAT
GTCGATGGTCATCGCTGTGTACGTGAGGTACATTCCGTGGATATATTGCT
TTCCGATAACCAGCGAAGAGCACCAAAACCTTCGGTGGTATGGTAGATGG
GATTAG
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protein sequence of Gchil1321.t1

>Gchil1321.t1 ID=Gchil1321.t1|Name=Gchil1321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=552bp
MRGQKPPLPRSRTPIKKATGTLHSTEAMGNMLKSKEGDGPIKDSKDIQAS
PVLRSSAKSNVRSSTRTVDVKATSIAQNTLQVVGTRDKYIQWSLLIIAWI
IRFYRLGEPPAVVFDEYHFGTFVDNILSGATHFDIHPPLGKLTLALFGWH
VGYRPDPEFGYDEIGKEYNGVLYYPLREVAAVFGVITVPLMYATARTFGM
SWVGALVCAGLFCFDNLNIIESRLILMDSQITFYLVLSLYCAFKLWKTTP
RTWPRFVWLTVTGFVCGCSISVKWTALATPGLIAIVSFFALHFLEEPLTL
FECAWAGFVGIGWYVALFYIHFRTMTRTGPGTGFFKPDFRATLVGDPSYN
PEAKREAFYKLFAYLNKYMFTANAGITTRHHWESTWYHWIVNWRGLLYYN
KEMDGRWASVYLHCNPIVCIICTASVVIFIMAKLFAVRYRNLKPFKPQTR
VLLSSAMRAGVFLFWGWIINLLPYILVDRSAFVYHYLPGLIYAQLLAGLV
VDQLPISLRIMTMVILMSMVIAVYVRYIPWIYCFPITSEEHQNLRWYGRW
D*
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mRNA from alignment at tig00004433_pilon:273837..275492+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1321.t1 ID=Gchil1321.t1|Name=Gchil1321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004433_pilon:273837..275492+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGGGCAGAAACCCCCGCTCCCTCGCTCTCGTACACCCATCAAGAA
AGCCACCGGCACCCTGCATTCGACCGAAGCCATGGGTAACATGCTCAAAT
CAAAAGAGGGGGACGGGCCGATAAAAGATTCGAAAGATATCCAGGCGTCG
CCAGTTCTTAGGTCATCTGCGAAATCGAATGTGAGGTCTAGCACTCGTAC
TGTTGACGTGAAGGCCACTTCGATTGCGCAAAATACTCTTCAGGTTGTGG
GCACCCGGGACAAATACATTCAATGGTCGTTGCTAATCATTGCATGGATC
ATTCGATTCTATAGGCTGGGAGAACCGCCCGCGGTAGTTTTCGATGAGTA
CCATTTTGGCACTTTCGTCGACAACATTCTCTCTGGCGCCACTCACTTTG
ATATTCATCCACCACTTGGGAAGCTTACCCTAGCTCTTTTTGGGTGGCAT
GTTGGTTATCGTCCCGATCCCGAATTTGGCTATGATGAGATCGGAAAGGA
GTATAATGGGGTATTGTACTATCCACTGCGCGAAGTTGCCGCCGTGTTCG
GAGTGATCACTGTGCCGCTGATGTATGCCACCGCTCGAACGTTTGGAATG
TCCTGGGTAGGTGCTCTGGTATGTGCGGGGCTATTCTGCTTTGACAATCT
GAACATCATTGAAAGTAGGCTTATCTTAATGGACTCACAGATTACTTTTT
ATCTGGTTCTCTCACTTTACTGTGCCTTTAAATTGTGGAAAACTACACCC
CGTACATGGCCACGCTTTGTTTGGCTCACAGTGACCGGATTTGTTTGTGG
ATGTTCGATAAGTGTGAAGTGGACCGCTTTGGCAACACCTGGTCTCATTG
CCATTGTTTCTTTCTTTGCTCTGCACTTCTTGGAAGAGCCATTGACTTTG
TTCGAATGCGCATGGGCAGGGTTTGTTGGCATAGGTTGGTATGTTGCGCT
TTTTTACATTCATTTTAGAACTATGACCCGTACGGGGCCGGGTACAGGTT
TTTTCAAGCCCGATTTCCGGGCAACCCTCGTAGGGGATCCAAGCTATAAC
CCGGAAGCAAAACGAGAAGCTTTTTACAAGCTGTTCGCTTATTTGAACAA
GTACATGTTCACTGCGAATGCAGGGATAACAACACGGCATCATTGGGAGA
GTACTTGGTATCACTGGATTGTGAACTGGCGGGGACTTCTCTATTATAAC
AAGGAAATGGATGGACGTTGGGCTTCCGTTTATCTTCATTGCAACCCTAT
CGTATGCATTATTTGCACTGCCAGCGTGGTGATATTTATAATGGCAAAGC
TTTTTGCCGTGCGTTACAGAAACCTGAAACCTTTTAAGCCTCAAACTCGA
GTGTTGCTAAGCTCAGCGATGCGCGCTGGTGTGTTTTTATTTTGGGGATG
GATAATCAACTTACTGCCGTACATTCTGGTCGATCGTTCTGCATTTGTGT
ACCATTATCTTCCTGGTTTGATTTATGCGCAACTTCTTGCAGGTCTTGTG
GTCGATCAGCTTCCCATCAGTCTGAGGATCATGACAATGGTCATTCTAAT
GTCGATGGTCATCGCTGTGTACGTGAGGTACATTCCGTGGATATATTGCT
TTCCGATAACCAGCGAAGAGCACCAAAACCTTCGGTGGTATGGTAGATGG
GATTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:273837..275492+

>Gchil1321.t1 ID=Gchil1321.t1|Name=Gchil1321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00004433_pilon:273837..275492+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGGGCAGAAACCCCCGCTCCCTCGCTCTCGTACACCCATCAAGAA
AGCCACCGGCACCCTGCATTCGACCGAAGCCATGGGTAACATGCTCAAAT
CAAAAGAGGGGGACGGGCCGATAAAAGATTCGAAAGATATCCAGGCGTCG
CCAGTTCTTAGGTCATCTGCGAAATCGAATGTGAGGTCTAGCACTCGTAC
TGTTGACGTGAAGGCCACTTCGATTGCGCAAAATACTCTTCAGGTTGTGG
GCACCCGGGACAAATACATTCAATGGTCGTTGCTAATCATTGCATGGATC
ATTCGATTCTATAGGCTGGGAGAACCGCCCGCGGTAGTTTTCGATGAGTA
CCATTTTGGCACTTTCGTCGACAACATTCTCTCTGGCGCCACTCACTTTG
ATATTCATCCACCACTTGGGAAGCTTACCCTAGCTCTTTTTGGGTGGCAT
GTTGGTTATCGTCCCGATCCCGAATTTGGCTATGATGAGATCGGAAAGGA
GTATAATGGGGTATTGTACTATCCACTGCGCGAAGTTGCCGCCGTGTTCG
GAGTGATCACTGTGCCGCTGATGTATGCCACCGCTCGAACGTTTGGAATG
TCCTGGGTAGGTGCTCTGGTATGTGCGGGGCTATTCTGCTTTGACAATCT
GAACATCATTGAAAGTAGGCTTATCTTAATGGACTCACAGATTACTTTTT
ATCTGGTTCTCTCACTTTACTGTGCCTTTAAATTGTGGAAAACTACACCC
CGTACATGGCCACGCTTTGTTTGGCTCACAGTGACCGGATTTGTTTGTGG
ATGTTCGATAAGTGTGAAGTGGACCGCTTTGGCAACACCTGGTCTCATTG
CCATTGTTTCTTTCTTTGCTCTGCACTTCTTGGAAGAGCCATTGACTTTG
TTCGAATGCGCATGGGCAGGGTTTGTTGGCATAGGTTGGTATGTTGCGCT
TTTTTACATTCATTTTAGAACTATGACCCGTACGGGGCCGGGTACAGGTT
TTTTCAAGCCCGATTTCCGGGCAACCCTCGTAGGGGATCCAAGCTATAAC
CCGGAAGCAAAACGAGAAGCTTTTTACAAGCTGTTCGCTTATTTGAACAA
GTACATGTTCACTGCGAATGCAGGGATAACAACACGGCATCATTGGGAGA
GTACTTGGTATCACTGGATTGTGAACTGGCGGGGACTTCTCTATTATAAC
AAGGAAATGGATGGACGTTGGGCTTCCGTTTATCTTCATTGCAACCCTAT
CGTATGCATTATTTGCACTGCCAGCGTGGTGATATTTATAATGGCAAAGC
TTTTTGCCGTGCGTTACAGAAACCTGAAACCTTTTAAGCCTCAAACTCGA
GTGTTGCTAAGCTCAGCGATGCGCGCTGGTGTGTTTTTATTTTGGGGATG
GATAATCAACTTACTGCCGTACATTCTGGTCGATCGTTCTGCATTTGTGT
ACCATTATCTTCCTGGTTTGATTTATGCGCAACTTCTTGCAGGTCTTGTG
GTCGATCAGCTTCCCATCAGTCTGAGGATCATGACAATGGTCATTCTAAT
GTCGATGGTCATCGCTGTGTACGTGAGGTACATTCCGTGGATATATTGCT
TTCCGATAACCAGCGAAGAGCACCAAAACCTTCGGTGGTATGGTAGATGG
GATTAG
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