Gchil1314.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1314.t1
Unique NameGchil1314.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:258623..259141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr35058
PFAMsDiphthami_syn_2
Max annot lvl2836|Bacillariophyta
Evalue3.61e-38
EggNOG OGs2CTC6@1|root,2S4BH@2759|Eukaryota,2XFRW@2836|Bacillariophyta
DescriptionDiphthamide synthase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1314Gchil1314Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 258623..259141 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1314.t1.start1Gchil1314.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 258623..258625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1314.t1.CDS1Gchil1314.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 258623..259141 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1314.t1.exon1Gchil1314.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 258623..259141 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1314.t1.stop1Gchil1314.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 259139..259141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1314.t1Gchil1314.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 258623..259141 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1314.t1 ID=Gchil1314.t1|Name=Gchil1314.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=173bp
MKRAALRPVILLTTFDSLSGIVAHQEVPIEHIVRQAKVLDVPLLGVPVAG
GAYVRLVSAGLDRLRDHGIEIKRVAFGDLHLQHVRSWRECELASLGAQLF
YPVWGVPYDSLLKDLEASKATIRISAVDRDRAALENVEVGDVFSSHFVRR
LPDEVDRFGENGEFHTLVELWK*
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spliced messenger RNA

>Gchil1314.t1 ID=Gchil1314.t1|Name=Gchil1314.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004433_pilon:258623..259141+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCGCTGCACTGCGACCTGTCATTCTGCTCACCACCTTTGACTC
TCTATCGGGCATTGTAGCGCATCAGGAAGTCCCAATAGAACATATAGTGC
GTCAAGCCAAGGTTCTCGACGTCCCCCTTCTAGGAGTTCCTGTTGCGGGT
GGCGCATATGTTCGTCTCGTCTCGGCTGGCTTGGATCGTTTGAGAGACCA
CGGAATTGAAATAAAGCGCGTTGCTTTCGGTGATTTGCATCTACAACATG
TCAGAAGCTGGAGAGAGTGCGAGCTTGCTTCTCTTGGGGCTCAGCTGTTC
TACCCAGTCTGGGGAGTTCCATATGATTCCTTACTTAAAGACCTAGAGGC
GTCGAAGGCCACTATTCGAATCAGCGCGGTAGATCGAGACCGCGCTGCAT
TAGAAAATGTCGAAGTTGGCGATGTTTTCTCCTCTCATTTTGTCAGGCGT
TTACCAGATGAAGTCGATCGTTTTGGTGAAAATGGAGAGTTTCACACATT
GGTCGAGTTGTGGAAGTAG
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protein sequence of Gchil1314.t1

>Gchil1314.t1 ID=Gchil1314.t1|Name=Gchil1314.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=173bp
MKRAALRPVILLTTFDSLSGIVAHQEVPIEHIVRQAKVLDVPLLGVPVAG
GAYVRLVSAGLDRLRDHGIEIKRVAFGDLHLQHVRSWRECELASLGAQLF
YPVWGVPYDSLLKDLEASKATIRISAVDRDRAALENVEVGDVFSSHFVRR
LPDEVDRFGENGEFHTLVELWK*
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mRNA from alignment at tig00004433_pilon:258623..259141+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1314.t1 ID=Gchil1314.t1|Name=Gchil1314.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004433_pilon:258623..259141+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGCGCTGCACTGCGACCTGTCATTCTGCTCACCACCTTTGACTC
TCTATCGGGCATTGTAGCGCATCAGGAAGTCCCAATAGAACATATAGTGC
GTCAAGCCAAGGTTCTCGACGTCCCCCTTCTAGGAGTTCCTGTTGCGGGT
GGCGCATATGTTCGTCTCGTCTCGGCTGGCTTGGATCGTTTGAGAGACCA
CGGAATTGAAATAAAGCGCGTTGCTTTCGGTGATTTGCATCTACAACATG
TCAGAAGCTGGAGAGAGTGCGAGCTTGCTTCTCTTGGGGCTCAGCTGTTC
TACCCAGTCTGGGGAGTTCCATATGATTCCTTACTTAAAGACCTAGAGGC
GTCGAAGGCCACTATTCGAATCAGCGCGGTAGATCGAGACCGCGCTGCAT
TAGAAAATGTCGAAGTTGGCGATGTTTTCTCCTCTCATTTTGTCAGGCGT
TTACCAGATGAAGTCGATCGTTTTGGTGAAAATGGAGAGTTTCACACATT
GGTCGAGTTGTGGAAGTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:258623..259141+

>Gchil1314.t1 ID=Gchil1314.t1|Name=Gchil1314.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00004433_pilon:258623..259141+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGCGCTGCACTGCGACCTGTCATTCTGCTCACCACCTTTGACTC
TCTATCGGGCATTGTAGCGCATCAGGAAGTCCCAATAGAACATATAGTGC
GTCAAGCCAAGGTTCTCGACGTCCCCCTTCTAGGAGTTCCTGTTGCGGGT
GGCGCATATGTTCGTCTCGTCTCGGCTGGCTTGGATCGTTTGAGAGACCA
CGGAATTGAAATAAAGCGCGTTGCTTTCGGTGATTTGCATCTACAACATG
TCAGAAGCTGGAGAGAGTGCGAGCTTGCTTCTCTTGGGGCTCAGCTGTTC
TACCCAGTCTGGGGAGTTCCATATGATTCCTTACTTAAAGACCTAGAGGC
GTCGAAGGCCACTATTCGAATCAGCGCGGTAGATCGAGACCGCGCTGCAT
TAGAAAATGTCGAAGTTGGCGATGTTTTCTCCTCTCATTTTGTCAGGCGT
TTACCAGATGAAGTCGATCGTTTTGGTGAAAATGGAGAGTTTCACACATT
GGTCGAGTTGTGGAAGTAG
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