Gchil1285.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1285.t1
Unique Name	Gchil1285.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:39696..40748 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS453CT
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K05857,ko:K14684,ko:K15111
KEGG TC	2.A.29.18,2.A.29.23
KEGG Reaction	R03332,R03435,R10952
KEGG Pathway	ko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG Module	M00130
Evalue	1.59e-58
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
EC	3.1.4.11
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1285	Gchil1285	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 39696..40748 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1285.t1.start1	Gchil1285.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 39696..39698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1285.t1.CDS1	Gchil1285.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 39696..40748 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1285.t1.exon1	Gchil1285.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 39696..40748 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1285.t1.stop1	Gchil1285.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 40746..40748 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1285.t1	Gchil1285.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 39696..40748 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:39696..40748+
coding sequence from alignment at tig00004433_pilon:39696..40748+

mRNA sequence

>Gchil1285.t1 ID=Gchil1285.t1|Name=Gchil1285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MAPSLRAAHFRLATLNPNLRLSNTHARPRPRKEKQFRVATARTTPLSIPE
NLACGAIARTAQIVSTFPIDTIKIRVQVSGISMSSSSVAVSPLSRISSAI
TKGHLYRGASVSLMGQVPYGMLTFGTYETLKTVFAQSRLQTWPDWARTVL
AATIGDAIGSLWLTPSEVVKSKTQAGVYASPFQAINSLSKQGPLAFYQGY
SAAIARDIPFRIIQLLMFERSRAWYMKRTNKSLDRITPLENLLIGAFAGT
ITGFTTCPLDVIRTRMMSQPKGTYKNALDCVTKLLAKDGPGALMRGIIPR
CLVIGPASAIFFFTFEASKAFFRSRTPSSVMRRAAFSGGVCSKRPLLSMC
*

spliced messenger RNA

>Gchil1285.t1 ID=Gchil1285.t1|Name=Gchil1285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004433_pilon:39696..40748+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTCGTTGCGCGCCGCACACTTCCGCCTGGCCACCCTCAACCC
CAACTTGCGCCTCAGCAACACGCACGCCCGTCCACGGCCTCGCAAAGAAA
AGCAATTTCGCGTGGCCACAGCCAGAACCACTCCGCTCTCCATACCCGAA
AATCTCGCATGCGGTGCAATAGCACGCACCGCGCAGATCGTATCCACCTT
TCCTATCGATACCATCAAGATAAGAGTGCAGGTCTCGGGCATATCCATGT
CTTCGTCCTCGGTGGCAGTATCGCCTCTCTCGCGAATTTCATCCGCCATT
ACAAAGGGTCACCTGTACCGCGGTGCGTCCGTGTCGCTTATGGGACAAGT
TCCTTACGGAATGCTCACGTTTGGTACCTATGAGACCTTGAAGACCGTAT
TTGCCCAATCTCGACTGCAAACCTGGCCGGACTGGGCTCGGACTGTGCTT
GCCGCCACAATTGGCGATGCAATCGGCTCGTTATGGCTCACGCCATCTGA
GGTGGTCAAATCAAAAACGCAAGCTGGCGTGTACGCCTCCCCATTCCAGG
CAATCAACAGCCTTTCCAAACAAGGGCCGTTGGCCTTCTACCAAGGCTAT
TCGGCCGCAATCGCAAGAGACATTCCGTTTCGCATTATTCAACTTCTCAT
GTTCGAGCGTTCTCGTGCCTGGTACATGAAACGCACAAACAAGTCTTTGG
ACAGAATCACACCCCTTGAAAACCTTCTCATCGGCGCTTTTGCGGGCACG
ATAACCGGCTTTACTACATGTCCACTCGATGTGATTCGCACCCGAATGAT
GTCGCAGCCAAAAGGCACCTATAAAAATGCTCTTGATTGCGTGACCAAAC
TGCTTGCAAAGGATGGACCTGGTGCGCTCATGAGAGGTATTATCCCGAGG
TGTTTAGTTATAGGTCCTGCAAGTGCAATTTTCTTCTTCACTTTTGAAGC
ATCAAAGGCCTTTTTCCGATCGAGAACGCCATCTTCTGTGATGCGACGCG
CAGCCTTCTCCGGTGGTGTCTGTTCCAAGCGGCCTCTGCTCTCGATGTGC
TGA

protein sequence of Gchil1285.t1

>Gchil1285.t1 ID=Gchil1285.t1|Name=Gchil1285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MAPSLRAAHFRLATLNPNLRLSNTHARPRPRKEKQFRVATARTTPLSIPE
NLACGAIARTAQIVSTFPIDTIKIRVQVSGISMSSSSVAVSPLSRISSAI
TKGHLYRGASVSLMGQVPYGMLTFGTYETLKTVFAQSRLQTWPDWARTVL
AATIGDAIGSLWLTPSEVVKSKTQAGVYASPFQAINSLSKQGPLAFYQGY
SAAIARDIPFRIIQLLMFERSRAWYMKRTNKSLDRITPLENLLIGAFAGT
ITGFTTCPLDVIRTRMMSQPKGTYKNALDCVTKLLAKDGPGALMRGIIPR
CLVIGPASAIFFFTFEASKAFFRSRTPSSVMRRAAFSGGVCSKRPLLSMC
*

mRNA from alignment at tig00004433_pilon:39696..40748+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1285.t1 ID=Gchil1285.t1|Name=Gchil1285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004433_pilon:39696..40748+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTCGTTGCGCGCCGCACACTTCCGCCTGGCCACCCTCAACCC
CAACTTGCGCCTCAGCAACACGCACGCCCGTCCACGGCCTCGCAAAGAAA
AGCAATTTCGCGTGGCCACAGCCAGAACCACTCCGCTCTCCATACCCGAA
AATCTCGCATGCGGTGCAATAGCACGCACCGCGCAGATCGTATCCACCTT
TCCTATCGATACCATCAAGATAAGAGTGCAGGTCTCGGGCATATCCATGT
CTTCGTCCTCGGTGGCAGTATCGCCTCTCTCGCGAATTTCATCCGCCATT
ACAAAGGGTCACCTGTACCGCGGTGCGTCCGTGTCGCTTATGGGACAAGT
TCCTTACGGAATGCTCACGTTTGGTACCTATGAGACCTTGAAGACCGTAT
TTGCCCAATCTCGACTGCAAACCTGGCCGGACTGGGCTCGGACTGTGCTT
GCCGCCACAATTGGCGATGCAATCGGCTCGTTATGGCTCACGCCATCTGA
GGTGGTCAAATCAAAAACGCAAGCTGGCGTGTACGCCTCCCCATTCCAGG
CAATCAACAGCCTTTCCAAACAAGGGCCGTTGGCCTTCTACCAAGGCTAT
TCGGCCGCAATCGCAAGAGACATTCCGTTTCGCATTATTCAACTTCTCAT
GTTCGAGCGTTCTCGTGCCTGGTACATGAAACGCACAAACAAGTCTTTGG
ACAGAATCACACCCCTTGAAAACCTTCTCATCGGCGCTTTTGCGGGCACG
ATAACCGGCTTTACTACATGTCCACTCGATGTGATTCGCACCCGAATGAT
GTCGCAGCCAAAAGGCACCTATAAAAATGCTCTTGATTGCGTGACCAAAC
TGCTTGCAAAGGATGGACCTGGTGCGCTCATGAGAGGTATTATCCCGAGG
TGTTTAGTTATAGGTCCTGCAAGTGCAATTTTCTTCTTCACTTTTGAAGC
ATCAAAGGCCTTTTTCCGATCGAGAACGCCATCTTCTGTGATGCGACGCG
CAGCCTTCTCCGGTGGTGTCTGTTCCAAGCGGCCTCTGCTCTCGATGTGC
TGA

Coding sequence (CDS) from alignment at tig00004433_pilon:39696..40748+

>Gchil1285.t1 ID=Gchil1285.t1|Name=Gchil1285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00004433_pilon:39696..40748+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTCGTTGCGCGCCGCACACTTCCGCCTGGCCACCCTCAACCC
CAACTTGCGCCTCAGCAACACGCACGCCCGTCCACGGCCTCGCAAAGAAA
AGCAATTTCGCGTGGCCACAGCCAGAACCACTCCGCTCTCCATACCCGAA
AATCTCGCATGCGGTGCAATAGCACGCACCGCGCAGATCGTATCCACCTT
TCCTATCGATACCATCAAGATAAGAGTGCAGGTCTCGGGCATATCCATGT
CTTCGTCCTCGGTGGCAGTATCGCCTCTCTCGCGAATTTCATCCGCCATT
ACAAAGGGTCACCTGTACCGCGGTGCGTCCGTGTCGCTTATGGGACAAGT
TCCTTACGGAATGCTCACGTTTGGTACCTATGAGACCTTGAAGACCGTAT
TTGCCCAATCTCGACTGCAAACCTGGCCGGACTGGGCTCGGACTGTGCTT
GCCGCCACAATTGGCGATGCAATCGGCTCGTTATGGCTCACGCCATCTGA
GGTGGTCAAATCAAAAACGCAAGCTGGCGTGTACGCCTCCCCATTCCAGG
CAATCAACAGCCTTTCCAAACAAGGGCCGTTGGCCTTCTACCAAGGCTAT
TCGGCCGCAATCGCAAGAGACATTCCGTTTCGCATTATTCAACTTCTCAT
GTTCGAGCGTTCTCGTGCCTGGTACATGAAACGCACAAACAAGTCTTTGG
ACAGAATCACACCCCTTGAAAACCTTCTCATCGGCGCTTTTGCGGGCACG
ATAACCGGCTTTACTACATGTCCACTCGATGTGATTCGCACCCGAATGAT
GTCGCAGCCAAAAGGCACCTATAAAAATGCTCTTGATTGCGTGACCAAAC
TGCTTGCAAAGGATGGACCTGGTGCGCTCATGAGAGGTATTATCCCGAGG
TGTTTAGTTATAGGTCCTGCAAGTGCAATTTTCTTCTTCACTTTTGAAGC
ATCAAAGGCCTTTTTCCGATCGAGAACGCCATCTTCTGTGATGCGACGCG
CAGCCTTCTCCGGTGGTGTCTGTTCCAAGCGGCCTCTGCTCTCGATGTGC
TGA