Gchil1283.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1283.t1
Unique Name	Gchil1283.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	157

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:36267..36737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML098CT
Preferred name	COX5B
PFAMs	COX5B
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02265
KEGG TC	3.D.4.11,3.D.4.8
KEGG Pathway	ko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00154
GOs	GO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008270,GO:0008324,GO:0008340,GO:0009055,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010876,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019915,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042221,GO:0042651,GO:0042773,GO:0042775,GO:0042776,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0048856,GO:0050896,GO:0050897,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902600,GO:1990542
Evalue	8.04e-37
EggNOG OGs	KOG3352@1\|root,KOG3352@2759\|Eukaryota
Description	mitochondrial ATP synthesis coupled proton transport
COG category	G
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1283	Gchil1283	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 36267..36737 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1283.t1.start1	Gchil1283.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 36267..36269 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1283.t1.CDS1	Gchil1283.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 36267..36737 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1283.t1.exon1	Gchil1283.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 36267..36737 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1283.t1.stop1	Gchil1283.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 36735..36737 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1283.t1	Gchil1283.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 36267..36737 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:36267..36737+
coding sequence from alignment at tig00004433_pilon:36267..36737+

mRNA sequence

>Gchil1283.t1 ID=Gchil1283.t1|Name=Gchil1283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MIAVSRTVASASPPLVALVRVAAVVAPVPRAARRLSPSLASAARAFAAKS
GDAAPSLVAEVKPGSSGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGAF
GTQDNPVKIQSAYHSRIVGCTGKATPDDHDLVWLLVEKHEKAVCKECEQV
FELDPL*

spliced messenger RNA

>Gchil1283.t1 ID=Gchil1283.t1|Name=Gchil1283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:36267..36737+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCGTCTCCCGGACGGTCGCCTCCGCGTCGCCGCCGCTCGTCGC
CCTGGTGCGCGTCGCAGCCGTCGTCGCACCCGTGCCGCGCGCCGCGCGCC
GCCTCTCGCCGTCGCTCGCGTCGGCTGCGCGCGCATTTGCCGCCAAGAGC
GGCGACGCCGCGCCCAGTCTGGTTGCCGAAGTCAAGCCCGGCTCGTCGGG
CGAGATTCCTAGCATCATTGACCAGGCCACGGGGCTGGAGCGCGCCGAGA
TCGATCATCCAGACCTCTTCAAGCACAACGAGGTGCTACGCGGTGCCTTC
GGCACCCAAGACAACCCCGTCAAGATCCAGTCCGCCTACCACTCCAGAAT
CGTCGGCTGCACCGGAAAGGCCACCCCGGACGACCACGACCTTGTTTGGC
TGCTCGTCGAAAAGCATGAAAAGGCCGTATGCAAGGAATGCGAACAGGTC
TTCGAGCTAGATCCTTTGTAA

protein sequence of Gchil1283.t1

>Gchil1283.t1 ID=Gchil1283.t1|Name=Gchil1283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MIAVSRTVASASPPLVALVRVAAVVAPVPRAARRLSPSLASAARAFAAKS
GDAAPSLVAEVKPGSSGEIPSIIDQATGLERAEIDHPDLFKHNEVLRGAF
GTQDNPVKIQSAYHSRIVGCTGKATPDDHDLVWLLVEKHEKAVCKECEQV
FELDPL*

mRNA from alignment at tig00004433_pilon:36267..36737+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1283.t1 ID=Gchil1283.t1|Name=Gchil1283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:36267..36737+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCCGTCTCCCGGACGGTCGCCTCCGCGTCGCCGCCGCTCGTCGC
CCTGGTGCGCGTCGCAGCCGTCGTCGCACCCGTGCCGCGCGCCGCGCGCC
GCCTCTCGCCGTCGCTCGCGTCGGCTGCGCGCGCATTTGCCGCCAAGAGC
GGCGACGCCGCGCCCAGTCTGGTTGCCGAAGTCAAGCCCGGCTCGTCGGG
CGAGATTCCTAGCATCATTGACCAGGCCACGGGGCTGGAGCGCGCCGAGA
TCGATCATCCAGACCTCTTCAAGCACAACGAGGTGCTACGCGGTGCCTTC
GGCACCCAAGACAACCCCGTCAAGATCCAGTCCGCCTACCACTCCAGAAT
CGTCGGCTGCACCGGAAAGGCCACCCCGGACGACCACGACCTTGTTTGGC
TGCTCGTCGAAAAGCATGAAAAGGCCGTATGCAAGGAATGCGAACAGGTC
TTCGAGCTAGATCCTTTGTAA

Coding sequence (CDS) from alignment at tig00004433_pilon:36267..36737+

>Gchil1283.t1 ID=Gchil1283.t1|Name=Gchil1283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00004433_pilon:36267..36737+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCCGTCTCCCGGACGGTCGCCTCCGCGTCGCCGCCGCTCGTCGC
CCTGGTGCGCGTCGCAGCCGTCGTCGCACCCGTGCCGCGCGCCGCGCGCC
GCCTCTCGCCGTCGCTCGCGTCGGCTGCGCGCGCATTTGCCGCCAAGAGC
GGCGACGCCGCGCCCAGTCTGGTTGCCGAAGTCAAGCCCGGCTCGTCGGG
CGAGATTCCTAGCATCATTGACCAGGCCACGGGGCTGGAGCGCGCCGAGA
TCGATCATCCAGACCTCTTCAAGCACAACGAGGTGCTACGCGGTGCCTTC
GGCACCCAAGACAACCCCGTCAAGATCCAGTCCGCCTACCACTCCAGAAT
CGTCGGCTGCACCGGAAAGGCCACCCCGGACGACCACGACCTTGTTTGGC
TGCTCGTCGAAAAGCATGAAAAGGCCGTATGCAAGGAATGCGAACAGGTC
TTCGAGCTAGATCCTTTGTAA