Gchil1282.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1282.t1
Unique NameGchil1282.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:959802..960605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59689.fgenesh2_kg.3__3578__AT2G20495.1
PFAMsStk19
Max annot lvl35493|Streptophyta
KEGG koko:K08880
Evalue4.02e-20
EggNOG OGs296WV@1|root,2RDW5@2759|Eukaryota,37PTA@33090|Viridiplantae,3GGQR@35493|Streptophyta,3HV34@3699|Brassicales
EC2.7.11.1
Descriptionkinase 19
COG categoryS
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1282Gchil1282Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 959802..960605 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1282.t1.stop1Gchil1282.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 959802..959804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1282.t1.CDS1Gchil1282.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 959802..960605 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1282.t1.exon1Gchil1282.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 959802..960605 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1282.t1.start1Gchil1282.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 960603..960605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1282.t1Gchil1282.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 959802..960605 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1282.t1 ID=Gchil1282.t1|Name=Gchil1282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MPPSNTLNPLPVKLKPRRTTRRRTRAQFPLRKQKPKPPQAEEDPLLTSIS
AIPDTQVALRILRQDWSEAANQDLPNTPPLVLGTQLNALVSNKTEIYRDL
DDICLHGLRRIQLPKGGDCFILLDDFRARASNSISPVVRTLFDDVFDQNH
MPWVTISSLRRVYGDVTDDAVDELVRSGYLTCQDEYSFNFAFPGMGEFMR
NRRSGANEIVSILRKAPYKEMGLTKLELRTLKKTCFTARWHVRDVVGSGQ
ADCVDTSVGALVRLQQF*
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spliced messenger RNA

>Gchil1282.t1 ID=Gchil1282.t1|Name=Gchil1282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004437_pilon:959802..960605- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTCTAATACTCTCAACCCTTTACCCGTCAAACTGAAACCGCG
ACGGACAACTCGCCGTCGCACTCGTGCTCAGTTTCCCCTTCGAAAACAAA
AGCCGAAACCGCCACAAGCTGAGGAAGACCCCTTGTTAACATCGATTTCA
GCCATTCCAGACACTCAGGTTGCGCTGCGTATTCTAAGGCAAGACTGGTC
AGAGGCCGCGAATCAAGACCTTCCGAATACACCTCCCCTGGTGCTCGGAA
CTCAGTTGAATGCTCTCGTCTCTAACAAAACAGAAATTTATCGTGACTTG
GATGACATTTGTCTCCACGGTTTGCGCCGCATCCAACTCCCTAAGGGTGG
TGATTGCTTTATCTTGTTGGATGATTTTCGCGCGAGGGCTAGCAACTCAA
TCTCACCAGTCGTGCGAACGTTATTCGATGACGTCTTTGATCAGAATCAC
ATGCCATGGGTCACAATTTCCTCTTTGCGACGAGTTTATGGAGATGTGAC
AGATGACGCTGTGGATGAGTTGGTACGAAGTGGGTATTTGACCTGTCAAG
ACGAGTATTCCTTTAATTTTGCTTTTCCGGGAATGGGTGAGTTTATGAGG
AACCGAAGATCGGGGGCAAATGAAATCGTATCCATTCTACGGAAAGCTCC
GTACAAGGAGATGGGCCTCACAAAGCTTGAACTGCGCACATTGAAGAAAA
CTTGTTTCACCGCGAGATGGCACGTGCGTGACGTTGTCGGATCAGGACAA
GCGGATTGTGTTGACACTTCTGTGGGAGCTCTTGTTCGACTCCAGCAATT
TTGA
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protein sequence of Gchil1282.t1

>Gchil1282.t1 ID=Gchil1282.t1|Name=Gchil1282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MPPSNTLNPLPVKLKPRRTTRRRTRAQFPLRKQKPKPPQAEEDPLLTSIS
AIPDTQVALRILRQDWSEAANQDLPNTPPLVLGTQLNALVSNKTEIYRDL
DDICLHGLRRIQLPKGGDCFILLDDFRARASNSISPVVRTLFDDVFDQNH
MPWVTISSLRRVYGDVTDDAVDELVRSGYLTCQDEYSFNFAFPGMGEFMR
NRRSGANEIVSILRKAPYKEMGLTKLELRTLKKTCFTARWHVRDVVGSGQ
ADCVDTSVGALVRLQQF*
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mRNA from alignment at tig00004437_pilon:959802..960605-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1282.t1 ID=Gchil1282.t1|Name=Gchil1282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004437_pilon:959802..960605- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGTCTAATACTCTCAACCCTTTACCCGTCAAACTGAAACCGCG
ACGGACAACTCGCCGTCGCACTCGTGCTCAGTTTCCCCTTCGAAAACAAA
AGCCGAAACCGCCACAAGCTGAGGAAGACCCCTTGTTAACATCGATTTCA
GCCATTCCAGACACTCAGGTTGCGCTGCGTATTCTAAGGCAAGACTGGTC
AGAGGCCGCGAATCAAGACCTTCCGAATACACCTCCCCTGGTGCTCGGAA
CTCAGTTGAATGCTCTCGTCTCTAACAAAACAGAAATTTATCGTGACTTG
GATGACATTTGTCTCCACGGTTTGCGCCGCATCCAACTCCCTAAGGGTGG
TGATTGCTTTATCTTGTTGGATGATTTTCGCGCGAGGGCTAGCAACTCAA
TCTCACCAGTCGTGCGAACGTTATTCGATGACGTCTTTGATCAGAATCAC
ATGCCATGGGTCACAATTTCCTCTTTGCGACGAGTTTATGGAGATGTGAC
AGATGACGCTGTGGATGAGTTGGTACGAAGTGGGTATTTGACCTGTCAAG
ACGAGTATTCCTTTAATTTTGCTTTTCCGGGAATGGGTGAGTTTATGAGG
AACCGAAGATCGGGGGCAAATGAAATCGTATCCATTCTACGGAAAGCTCC
GTACAAGGAGATGGGCCTCACAAAGCTTGAACTGCGCACATTGAAGAAAA
CTTGTTTCACCGCGAGATGGCACGTGCGTGACGTTGTCGGATCAGGACAA
GCGGATTGTGTTGACACTTCTGTGGGAGCTCTTGTTCGACTCCAGCAATT
TTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:959802..960605-

>Gchil1282.t1 ID=Gchil1282.t1|Name=Gchil1282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00004437_pilon:959802..960605- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGTCTAATACTCTCAACCCTTTACCCGTCAAACTGAAACCGCG
ACGGACAACTCGCCGTCGCACTCGTGCTCAGTTTCCCCTTCGAAAACAAA
AGCCGAAACCGCCACAAGCTGAGGAAGACCCCTTGTTAACATCGATTTCA
GCCATTCCAGACACTCAGGTTGCGCTGCGTATTCTAAGGCAAGACTGGTC
AGAGGCCGCGAATCAAGACCTTCCGAATACACCTCCCCTGGTGCTCGGAA
CTCAGTTGAATGCTCTCGTCTCTAACAAAACAGAAATTTATCGTGACTTG
GATGACATTTGTCTCCACGGTTTGCGCCGCATCCAACTCCCTAAGGGTGG
TGATTGCTTTATCTTGTTGGATGATTTTCGCGCGAGGGCTAGCAACTCAA
TCTCACCAGTCGTGCGAACGTTATTCGATGACGTCTTTGATCAGAATCAC
ATGCCATGGGTCACAATTTCCTCTTTGCGACGAGTTTATGGAGATGTGAC
AGATGACGCTGTGGATGAGTTGGTACGAAGTGGGTATTTGACCTGTCAAG
ACGAGTATTCCTTTAATTTTGCTTTTCCGGGAATGGGTGAGTTTATGAGG
AACCGAAGATCGGGGGCAAATGAAATCGTATCCATTCTACGGAAAGCTCC
GTACAAGGAGATGGGCCTCACAAAGCTTGAACTGCGCACATTGAAGAAAA
CTTGTTTCACCGCGAGATGGCACGTGCGTGACGTTGTCGGATCAGGACAA
GCGGATTGTGTTGACACTTCTGTGGGAGCTCTTGTTCGACTCCAGCAATT
TTGA
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