Gchil1281.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1281.t1
Unique Name	Gchil1281.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:958610..959746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2JHC8
Preferred name	cms1
PFAMs	CMS1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14784
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
Evalue	2.73e-05
EggNOG OGs	KOG3089@1\|root,KOG3089@2759\|Eukaryota,395QV@33154\|Opisthokonta,3P1I7@4751\|Fungi,1GU2B@112252\|Fungi incertae sedis
Description	U3-containing 90S pre-ribosomal complex subunit
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1281	Gchil1281	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 958610..959746 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1281.t1.start1	Gchil1281.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 958610..958612 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1281.t1.CDS1	Gchil1281.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 958610..959746 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1281.t1.exon1	Gchil1281.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 958610..959746 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1281.t1.stop1	Gchil1281.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 959744..959746 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1281.t1	Gchil1281.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 958610..959746 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:958610..959746+
coding sequence from alignment at tig00004437_pilon:958610..959746+

mRNA sequence

>Gchil1281.t1 ID=Gchil1281.t1|Name=Gchil1281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MTRTKSRKPGSGDGRGRKRKREESAVTAPDRAKYRQAHSSLSTSKKSPPP
KNPPQPPSLSSDQKNDVEAVQAFVENEHAKLRTELKRLRKQVHREKTALK
RKRESSETSGKKIAGIQPSKDEFDEQGIASNSVKEARTLERRSRRSQFEM
QRAKTDEMIRTAPHQFLWSEYIKWAKEKDLDIHERNQWSSDQVIANTEDG
QESLIPFVKKAIGSDYQKRTTFRKAKKATPGIAVIALAPSALRAVRIAPR
LYDGQPVGKLFGKQKAEFQQQWLRRACRKTVVSTAVGTAKRVQRLLEDGH
MTLEHTALIIIDFWRNPSLRNVLDFPFERNEIFQFLHDFSCARVTNGMKV
MLTIPENQPVRLEDVTNDKQKQKATEET*

spliced messenger RNA

>Gchil1281.t1 ID=Gchil1281.t1|Name=Gchil1281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00004437_pilon:958610..959746+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGAACTAAGTCCAGAAAACCTGGCAGTGGAGACGGTCGCGGACG
TAAACGAAAGCGCGAGGAATCTGCGGTAACCGCCCCCGACCGCGCCAAGT
ACCGACAAGCACACTCCAGCTTATCAACGTCGAAAAAATCCCCCCCGCCT
AAGAATCCCCCCCAGCCCCCCAGTCTGAGCTCGGATCAGAAAAATGACGT
TGAAGCCGTACAGGCTTTCGTCGAAAATGAACATGCAAAGCTGCGCACCG
AGCTGAAACGACTACGAAAACAAGTGCATCGCGAGAAGACAGCACTCAAA
CGAAAGAGAGAGTCTTCCGAGACGAGTGGGAAGAAAATCGCGGGCATTCA
GCCTTCAAAAGACGAATTTGATGAACAGGGAATCGCTTCGAACTCAGTAA
AAGAGGCTCGCACTCTGGAACGTCGTTCGCGTCGCTCTCAGTTTGAAATG
CAACGAGCGAAGACAGATGAAATGATTCGCACAGCTCCACATCAGTTTTT
ATGGTCTGAGTACATCAAATGGGCGAAGGAGAAGGACCTAGATATTCATG
AAAGAAATCAATGGTCTTCAGATCAAGTCATCGCAAACACGGAAGACGGC
CAAGAGTCACTTATCCCATTCGTGAAGAAAGCCATCGGCTCAGATTACCA
GAAGCGGACAACTTTTCGTAAGGCAAAGAAAGCTACGCCAGGCATAGCGG
TCATAGCACTTGCGCCGAGCGCCTTGCGTGCAGTTCGAATAGCTCCGCGA
TTGTATGATGGGCAACCAGTGGGAAAGCTTTTTGGAAAGCAAAAGGCAGA
GTTCCAGCAACAATGGCTGCGTAGGGCGTGCCGAAAGACTGTAGTGTCAA
CAGCTGTTGGAACTGCGAAACGCGTGCAGAGACTACTCGAAGATGGACAT
ATGACTTTGGAACACACGGCGCTGATTATTATTGACTTTTGGAGGAACCC
CAGCCTAAGAAATGTACTTGACTTTCCCTTCGAACGTAATGAGATTTTCC
AGTTTCTACATGATTTTTCTTGCGCTCGAGTAACGAATGGTATGAAGGTT
ATGCTAACCATTCCCGAAAACCAGCCTGTTCGCTTAGAAGATGTTACGAA
CGATAAACAGAAACAAAAAGCAACGGAAGAAACTTAA

protein sequence of Gchil1281.t1

>Gchil1281.t1 ID=Gchil1281.t1|Name=Gchil1281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MTRTKSRKPGSGDGRGRKRKREESAVTAPDRAKYRQAHSSLSTSKKSPPP
KNPPQPPSLSSDQKNDVEAVQAFVENEHAKLRTELKRLRKQVHREKTALK
RKRESSETSGKKIAGIQPSKDEFDEQGIASNSVKEARTLERRSRRSQFEM
QRAKTDEMIRTAPHQFLWSEYIKWAKEKDLDIHERNQWSSDQVIANTEDG
QESLIPFVKKAIGSDYQKRTTFRKAKKATPGIAVIALAPSALRAVRIAPR
LYDGQPVGKLFGKQKAEFQQQWLRRACRKTVVSTAVGTAKRVQRLLEDGH
MTLEHTALIIIDFWRNPSLRNVLDFPFERNEIFQFLHDFSCARVTNGMKV
MLTIPENQPVRLEDVTNDKQKQKATEET*

mRNA from alignment at tig00004437_pilon:958610..959746+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1281.t1 ID=Gchil1281.t1|Name=Gchil1281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00004437_pilon:958610..959746+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTAGAACTAAGTCCAGAAAACCTGGCAGTGGAGACGGTCGCGGACG
TAAACGAAAGCGCGAGGAATCTGCGGTAACCGCCCCCGACCGCGCCAAGT
ACCGACAAGCACACTCCAGCTTATCAACGTCGAAAAAATCCCCCCCGCCT
AAGAATCCCCCCCAGCCCCCCAGTCTGAGCTCGGATCAGAAAAATGACGT
TGAAGCCGTACAGGCTTTCGTCGAAAATGAACATGCAAAGCTGCGCACCG
AGCTGAAACGACTACGAAAACAAGTGCATCGCGAGAAGACAGCACTCAAA
CGAAAGAGAGAGTCTTCCGAGACGAGTGGGAAGAAAATCGCGGGCATTCA
GCCTTCAAAAGACGAATTTGATGAACAGGGAATCGCTTCGAACTCAGTAA
AAGAGGCTCGCACTCTGGAACGTCGTTCGCGTCGCTCTCAGTTTGAAATG
CAACGAGCGAAGACAGATGAAATGATTCGCACAGCTCCACATCAGTTTTT
ATGGTCTGAGTACATCAAATGGGCGAAGGAGAAGGACCTAGATATTCATG
AAAGAAATCAATGGTCTTCAGATCAAGTCATCGCAAACACGGAAGACGGC
CAAGAGTCACTTATCCCATTCGTGAAGAAAGCCATCGGCTCAGATTACCA
GAAGCGGACAACTTTTCGTAAGGCAAAGAAAGCTACGCCAGGCATAGCGG
TCATAGCACTTGCGCCGAGCGCCTTGCGTGCAGTTCGAATAGCTCCGCGA
TTGTATGATGGGCAACCAGTGGGAAAGCTTTTTGGAAAGCAAAAGGCAGA
GTTCCAGCAACAATGGCTGCGTAGGGCGTGCCGAAAGACTGTAGTGTCAA
CAGCTGTTGGAACTGCGAAACGCGTGCAGAGACTACTCGAAGATGGACAT
ATGACTTTGGAACACACGGCGCTGATTATTATTGACTTTTGGAGGAACCC
CAGCCTAAGAAATGTACTTGACTTTCCCTTCGAACGTAATGAGATTTTCC
AGTTTCTACATGATTTTTCTTGCGCTCGAGTAACGAATGGTATGAAGGTT
ATGCTAACCATTCCCGAAAACCAGCCTGTTCGCTTAGAAGATGTTACGAA
CGATAAACAGAAACAAAAAGCAACGGAAGAAACTTAA

Coding sequence (CDS) from alignment at tig00004437_pilon:958610..959746+

>Gchil1281.t1 ID=Gchil1281.t1|Name=Gchil1281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00004437_pilon:958610..959746+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTAGAACTAAGTCCAGAAAACCTGGCAGTGGAGACGGTCGCGGACG
TAAACGAAAGCGCGAGGAATCTGCGGTAACCGCCCCCGACCGCGCCAAGT
ACCGACAAGCACACTCCAGCTTATCAACGTCGAAAAAATCCCCCCCGCCT
AAGAATCCCCCCCAGCCCCCCAGTCTGAGCTCGGATCAGAAAAATGACGT
TGAAGCCGTACAGGCTTTCGTCGAAAATGAACATGCAAAGCTGCGCACCG
AGCTGAAACGACTACGAAAACAAGTGCATCGCGAGAAGACAGCACTCAAA
CGAAAGAGAGAGTCTTCCGAGACGAGTGGGAAGAAAATCGCGGGCATTCA
GCCTTCAAAAGACGAATTTGATGAACAGGGAATCGCTTCGAACTCAGTAA
AAGAGGCTCGCACTCTGGAACGTCGTTCGCGTCGCTCTCAGTTTGAAATG
CAACGAGCGAAGACAGATGAAATGATTCGCACAGCTCCACATCAGTTTTT
ATGGTCTGAGTACATCAAATGGGCGAAGGAGAAGGACCTAGATATTCATG
AAAGAAATCAATGGTCTTCAGATCAAGTCATCGCAAACACGGAAGACGGC
CAAGAGTCACTTATCCCATTCGTGAAGAAAGCCATCGGCTCAGATTACCA
GAAGCGGACAACTTTTCGTAAGGCAAAGAAAGCTACGCCAGGCATAGCGG
TCATAGCACTTGCGCCGAGCGCCTTGCGTGCAGTTCGAATAGCTCCGCGA
TTGTATGATGGGCAACCAGTGGGAAAGCTTTTTGGAAAGCAAAAGGCAGA
GTTCCAGCAACAATGGCTGCGTAGGGCGTGCCGAAAGACTGTAGTGTCAA
CAGCTGTTGGAACTGCGAAACGCGTGCAGAGACTACTCGAAGATGGACAT
ATGACTTTGGAACACACGGCGCTGATTATTATTGACTTTTGGAGGAACCC
CAGCCTAAGAAATGTACTTGACTTTCCCTTCGAACGTAATGAGATTTTCC
AGTTTCTACATGATTTTTCTTGCGCTCGAGTAACGAATGGTATGAAGGTT
ATGCTAACCATTCCCGAAAACCAGCCTGTTCGCTTAGAAGATGTTACGAA
CGATAAACAGAAACAAAAAGCAACGGAAGAAACTTAA