Gchil1274.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1274.t1
Unique Name	Gchil1274.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	645

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:945191..947125 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29078.XP_008153702.1
Preferred name	DENND6B
PFAMs	Avl9,DENN,SPA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K17654
GOs	GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0008150,GO:0012505,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0031267,GO:0031410,GO:0031982,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051020,GO:0051336,GO:0051345,GO:0055037,GO:0065007,GO:0065009,GO:0097708,GO:0098772
Evalue	2.61e-40
EggNOG OGs	KOG2432@1\|root,KOG2432@2759\|Eukaryota,38F00@33154\|Opisthokonta,3BD28@33208\|Metazoa,3CVK1@33213\|Bilateria,480UN@7711\|Chordata,48YGN@7742\|Vertebrata,3JCE0@40674\|Mammalia,4KWRE@9397\|Chiroptera
Description	Stabilization of polarity axis
COG category	S
BRITE	ko00000,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1274	Gchil1274	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 945191..947125 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1274.t1.stop1	Gchil1274.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 945191..945193 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1274.t1.CDS1	Gchil1274.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 945191..947125 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1274.t1.exon1	Gchil1274.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 945191..947125 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1274.t1.start1	Gchil1274.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 947123..947125 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1274.t1	Gchil1274.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 945191..947125 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:945191..947125-
coding sequence from alignment at tig00004437_pilon:945191..947125-

mRNA sequence

>Gchil1274.t1 ID=Gchil1274.t1|Name=Gchil1274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp
MRMLRVAEPRHDSTVAQHHHALSTLPPTLPFDIWMRRTPATPTRHHHTLA
APVAACEPWVTAFLIIGFDLEKGQVVEACVPHNVLTHADKEAICYYAMPD
SAAAGTGHEDALYTFRITRHAQSERGSTLLLAHTLFRQAPDRTNPRGFFQ
KALVVVTSASFVTLASVLLCSLASKAFAHGENALLRAVQDVASWPDPHVH
HDGQTLELPFVDDTVTLSVPHMFLRSFAAPDAILMVKGIQCTAEALPLPA
HLTPPSSSPLSKHHTVSRAGLGTPDLVRMWPLSASSAKPSAQPFHEVNLA
CTLQGVHEKLWSVWELVAIGEPLLVVGPTPSECASAVLCIIGMLHPLPFV
GDWRPYYCIQDSTYTEFVSSKNTTLFPDGAVFGVTNSHLVETLPFEHILV
LPGSDIAGKHFRPGLRSSHRSSIYKARHISNLLFASLSASVKGGANADQL
SLELRDAIYDYITKPFLGMFDRYLAPSWNDGKSLSDEPHVSDPFGRQLTL
IDFEVEKFPTPQDLSCVYNNVSKGPGNPKRMRALYQRFVRGPIFREWWRE
ARLAAERQCHSIHRQLMLDACSRRALRRNVGGGRKQLVDLVARVEKELQV
VDETDAALFKRLTILVDSLRTELVHSVGESIDNQLDNESALLLV*

spliced messenger RNA

>Gchil1274.t1 ID=Gchil1274.t1|Name=Gchil1274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00004437_pilon:945191..947125- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGCTGCGCGTCGCAGAGCCCCGTCATGACTCCACCGTCGCACA
GCACCATCACGCGCTCTCCACGCTGCCGCCCACCCTGCCCTTCGACATTT
GGATGCGCCGCACTCCCGCCACTCCCACCCGCCATCATCACACCCTTGCC
GCCCCCGTCGCCGCCTGTGAGCCCTGGGTCACAGCCTTTCTCATCATCGG
GTTTGACTTGGAAAAGGGGCAGGTCGTCGAGGCATGCGTGCCGCATAATG
TGCTCACTCACGCAGACAAGGAGGCCATATGTTACTATGCCATGCCGGAC
TCGGCCGCCGCCGGCACCGGCCATGAGGATGCTCTTTACACTTTTCGCAT
AACCCGCCACGCGCAGTCGGAGCGCGGGAGCACTTTGCTTCTTGCGCACA
CGCTTTTTCGTCAGGCCCCGGACAGAACTAACCCTAGAGGCTTCTTCCAA
AAGGCCCTTGTCGTCGTAACCTCCGCGTCCTTTGTCACACTTGCCAGCGT
CTTGCTCTGCAGCTTGGCGTCAAAAGCGTTTGCGCACGGCGAAAACGCCT
TGTTGCGTGCCGTACAAGACGTTGCCTCATGGCCTGACCCTCACGTCCAT
CATGACGGTCAAACTCTCGAGTTGCCATTTGTCGACGACACCGTCACTTT
GTCTGTACCGCACATGTTCCTCCGCTCTTTCGCAGCTCCGGATGCCATCT
TAATGGTAAAAGGCATACAATGCACAGCTGAAGCTTTGCCGTTGCCAGCT
CATCTCACACCACCGTCCTCGTCGCCTTTGAGCAAGCATCATACCGTCAG
TAGAGCGGGTTTGGGTACACCAGATCTCGTGCGCATGTGGCCGCTCTCCG
CCTCTTCCGCGAAACCCTCAGCCCAACCCTTTCATGAAGTGAATCTCGCG
TGTACGTTGCAAGGCGTGCACGAAAAGCTGTGGTCGGTGTGGGAACTTGT
TGCCATAGGGGAACCATTACTTGTTGTTGGTCCCACGCCCTCTGAGTGCG
CTTCAGCCGTGCTGTGCATTATCGGCATGCTTCACCCACTTCCTTTTGTT
GGCGATTGGCGCCCCTATTACTGCATACAAGACTCGACGTATACCGAGTT
CGTATCTTCAAAGAACACCACGCTATTTCCGGACGGAGCCGTTTTCGGTG
TCACAAATAGTCATCTCGTAGAAACTCTCCCTTTCGAGCACATTCTTGTA
CTTCCTGGATCAGACATTGCTGGAAAGCATTTCCGTCCTGGACTGAGAAG
CTCGCACAGGTCCTCAATTTACAAAGCTCGCCACATATCAAATCTGCTGT
TCGCCTCATTGTCCGCTTCAGTGAAAGGTGGCGCCAACGCAGATCAGCTG
TCTCTTGAATTGAGGGACGCCATATATGACTACATTACCAAACCTTTTCT
TGGCATGTTCGACAGATACCTTGCGCCATCTTGGAATGATGGCAAGTCCC
TCAGTGATGAACCACACGTATCTGACCCTTTTGGAAGACAATTGACTCTA
ATAGATTTTGAGGTAGAAAAGTTTCCAACACCACAAGATCTATCGTGTGT
CTACAACAACGTATCGAAAGGTCCTGGGAACCCCAAGCGCATGCGAGCGC
TGTATCAAAGATTTGTACGCGGACCAATTTTTCGAGAATGGTGGCGGGAA
GCACGATTAGCAGCTGAAAGGCAGTGTCATTCTATACATCGGCAACTGAT
GCTTGACGCGTGTTCACGGAGGGCGTTGAGGAGAAATGTGGGTGGAGGAC
GAAAACAGTTAGTAGATTTGGTAGCGCGAGTCGAAAAAGAGCTTCAAGTT
GTGGATGAAACCGATGCGGCACTGTTCAAAAGACTGACTATTCTGGTAGA
TAGTTTAAGAACGGAGCTGGTTCATTCCGTTGGCGAGTCAATAGATAATC
AATTGGACAATGAATCGGCGCTGCTTCTAGTGTAG

protein sequence of Gchil1274.t1

>Gchil1274.t1 ID=Gchil1274.t1|Name=Gchil1274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=645bp
MRMLRVAEPRHDSTVAQHHHALSTLPPTLPFDIWMRRTPATPTRHHHTLA
APVAACEPWVTAFLIIGFDLEKGQVVEACVPHNVLTHADKEAICYYAMPD
SAAAGTGHEDALYTFRITRHAQSERGSTLLLAHTLFRQAPDRTNPRGFFQ
KALVVVTSASFVTLASVLLCSLASKAFAHGENALLRAVQDVASWPDPHVH
HDGQTLELPFVDDTVTLSVPHMFLRSFAAPDAILMVKGIQCTAEALPLPA
HLTPPSSSPLSKHHTVSRAGLGTPDLVRMWPLSASSAKPSAQPFHEVNLA
CTLQGVHEKLWSVWELVAIGEPLLVVGPTPSECASAVLCIIGMLHPLPFV
GDWRPYYCIQDSTYTEFVSSKNTTLFPDGAVFGVTNSHLVETLPFEHILV
LPGSDIAGKHFRPGLRSSHRSSIYKARHISNLLFASLSASVKGGANADQL
SLELRDAIYDYITKPFLGMFDRYLAPSWNDGKSLSDEPHVSDPFGRQLTL
IDFEVEKFPTPQDLSCVYNNVSKGPGNPKRMRALYQRFVRGPIFREWWRE
ARLAAERQCHSIHRQLMLDACSRRALRRNVGGGRKQLVDLVARVEKELQV
VDETDAALFKRLTILVDSLRTELVHSVGESIDNQLDNESALLLV*

mRNA from alignment at tig00004437_pilon:945191..947125-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1274.t1 ID=Gchil1274.t1|Name=Gchil1274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00004437_pilon:945191..947125- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCATGCTGCGCGTCGCAGAGCCCCGTCATGACTCCACCGTCGCACA
GCACCATCACGCGCTCTCCACGCTGCCGCCCACCCTGCCCTTCGACATTT
GGATGCGCCGCACTCCCGCCACTCCCACCCGCCATCATCACACCCTTGCC
GCCCCCGTCGCCGCCTGTGAGCCCTGGGTCACAGCCTTTCTCATCATCGG
GTTTGACTTGGAAAAGGGGCAGGTCGTCGAGGCATGCGTGCCGCATAATG
TGCTCACTCACGCAGACAAGGAGGCCATATGTTACTATGCCATGCCGGAC
TCGGCCGCCGCCGGCACCGGCCATGAGGATGCTCTTTACACTTTTCGCAT
AACCCGCCACGCGCAGTCGGAGCGCGGGAGCACTTTGCTTCTTGCGCACA
CGCTTTTTCGTCAGGCCCCGGACAGAACTAACCCTAGAGGCTTCTTCCAA
AAGGCCCTTGTCGTCGTAACCTCCGCGTCCTTTGTCACACTTGCCAGCGT
CTTGCTCTGCAGCTTGGCGTCAAAAGCGTTTGCGCACGGCGAAAACGCCT
TGTTGCGTGCCGTACAAGACGTTGCCTCATGGCCTGACCCTCACGTCCAT
CATGACGGTCAAACTCTCGAGTTGCCATTTGTCGACGACACCGTCACTTT
GTCTGTACCGCACATGTTCCTCCGCTCTTTCGCAGCTCCGGATGCCATCT
TAATGGTAAAAGGCATACAATGCACAGCTGAAGCTTTGCCGTTGCCAGCT
CATCTCACACCACCGTCCTCGTCGCCTTTGAGCAAGCATCATACCGTCAG
TAGAGCGGGTTTGGGTACACCAGATCTCGTGCGCATGTGGCCGCTCTCCG
CCTCTTCCGCGAAACCCTCAGCCCAACCCTTTCATGAAGTGAATCTCGCG
TGTACGTTGCAAGGCGTGCACGAAAAGCTGTGGTCGGTGTGGGAACTTGT
TGCCATAGGGGAACCATTACTTGTTGTTGGTCCCACGCCCTCTGAGTGCG
CTTCAGCCGTGCTGTGCATTATCGGCATGCTTCACCCACTTCCTTTTGTT
GGCGATTGGCGCCCCTATTACTGCATACAAGACTCGACGTATACCGAGTT
CGTATCTTCAAAGAACACCACGCTATTTCCGGACGGAGCCGTTTTCGGTG
TCACAAATAGTCATCTCGTAGAAACTCTCCCTTTCGAGCACATTCTTGTA
CTTCCTGGATCAGACATTGCTGGAAAGCATTTCCGTCCTGGACTGAGAAG
CTCGCACAGGTCCTCAATTTACAAAGCTCGCCACATATCAAATCTGCTGT
TCGCCTCATTGTCCGCTTCAGTGAAAGGTGGCGCCAACGCAGATCAGCTG
TCTCTTGAATTGAGGGACGCCATATATGACTACATTACCAAACCTTTTCT
TGGCATGTTCGACAGATACCTTGCGCCATCTTGGAATGATGGCAAGTCCC
TCAGTGATGAACCACACGTATCTGACCCTTTTGGAAGACAATTGACTCTA
ATAGATTTTGAGGTAGAAAAGTTTCCAACACCACAAGATCTATCGTGTGT
CTACAACAACGTATCGAAAGGTCCTGGGAACCCCAAGCGCATGCGAGCGC
TGTATCAAAGATTTGTACGCGGACCAATTTTTCGAGAATGGTGGCGGGAA
GCACGATTAGCAGCTGAAAGGCAGTGTCATTCTATACATCGGCAACTGAT
GCTTGACGCGTGTTCACGGAGGGCGTTGAGGAGAAATGTGGGTGGAGGAC
GAAAACAGTTAGTAGATTTGGTAGCGCGAGTCGAAAAAGAGCTTCAAGTT
GTGGATGAAACCGATGCGGCACTGTTCAAAAGACTGACTATTCTGGTAGA
TAGTTTAAGAACGGAGCTGGTTCATTCCGTTGGCGAGTCAATAGATAATC
AATTGGACAATGAATCGGCGCTGCTTCTAGTGTAG

Coding sequence (CDS) from alignment at tig00004437_pilon:945191..947125-

>Gchil1274.t1 ID=Gchil1274.t1|Name=Gchil1274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1935bp|location=Sequence derived from alignment at tig00004437_pilon:945191..947125- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCATGCTGCGCGTCGCAGAGCCCCGTCATGACTCCACCGTCGCACA
GCACCATCACGCGCTCTCCACGCTGCCGCCCACCCTGCCCTTCGACATTT
GGATGCGCCGCACTCCCGCCACTCCCACCCGCCATCATCACACCCTTGCC
GCCCCCGTCGCCGCCTGTGAGCCCTGGGTCACAGCCTTTCTCATCATCGG
GTTTGACTTGGAAAAGGGGCAGGTCGTCGAGGCATGCGTGCCGCATAATG
TGCTCACTCACGCAGACAAGGAGGCCATATGTTACTATGCCATGCCGGAC
TCGGCCGCCGCCGGCACCGGCCATGAGGATGCTCTTTACACTTTTCGCAT
AACCCGCCACGCGCAGTCGGAGCGCGGGAGCACTTTGCTTCTTGCGCACA
CGCTTTTTCGTCAGGCCCCGGACAGAACTAACCCTAGAGGCTTCTTCCAA
AAGGCCCTTGTCGTCGTAACCTCCGCGTCCTTTGTCACACTTGCCAGCGT
CTTGCTCTGCAGCTTGGCGTCAAAAGCGTTTGCGCACGGCGAAAACGCCT
TGTTGCGTGCCGTACAAGACGTTGCCTCATGGCCTGACCCTCACGTCCAT
CATGACGGTCAAACTCTCGAGTTGCCATTTGTCGACGACACCGTCACTTT
GTCTGTACCGCACATGTTCCTCCGCTCTTTCGCAGCTCCGGATGCCATCT
TAATGGTAAAAGGCATACAATGCACAGCTGAAGCTTTGCCGTTGCCAGCT
CATCTCACACCACCGTCCTCGTCGCCTTTGAGCAAGCATCATACCGTCAG
TAGAGCGGGTTTGGGTACACCAGATCTCGTGCGCATGTGGCCGCTCTCCG
CCTCTTCCGCGAAACCCTCAGCCCAACCCTTTCATGAAGTGAATCTCGCG
TGTACGTTGCAAGGCGTGCACGAAAAGCTGTGGTCGGTGTGGGAACTTGT
TGCCATAGGGGAACCATTACTTGTTGTTGGTCCCACGCCCTCTGAGTGCG
CTTCAGCCGTGCTGTGCATTATCGGCATGCTTCACCCACTTCCTTTTGTT
GGCGATTGGCGCCCCTATTACTGCATACAAGACTCGACGTATACCGAGTT
CGTATCTTCAAAGAACACCACGCTATTTCCGGACGGAGCCGTTTTCGGTG
TCACAAATAGTCATCTCGTAGAAACTCTCCCTTTCGAGCACATTCTTGTA
CTTCCTGGATCAGACATTGCTGGAAAGCATTTCCGTCCTGGACTGAGAAG
CTCGCACAGGTCCTCAATTTACAAAGCTCGCCACATATCAAATCTGCTGT
TCGCCTCATTGTCCGCTTCAGTGAAAGGTGGCGCCAACGCAGATCAGCTG
TCTCTTGAATTGAGGGACGCCATATATGACTACATTACCAAACCTTTTCT
TGGCATGTTCGACAGATACCTTGCGCCATCTTGGAATGATGGCAAGTCCC
TCAGTGATGAACCACACGTATCTGACCCTTTTGGAAGACAATTGACTCTA
ATAGATTTTGAGGTAGAAAAGTTTCCAACACCACAAGATCTATCGTGTGT
CTACAACAACGTATCGAAAGGTCCTGGGAACCCCAAGCGCATGCGAGCGC
TGTATCAAAGATTTGTACGCGGACCAATTTTTCGAGAATGGTGGCGGGAA
GCACGATTAGCAGCTGAAAGGCAGTGTCATTCTATACATCGGCAACTGAT
GCTTGACGCGTGTTCACGGAGGGCGTTGAGGAGAAATGTGGGTGGAGGAC
GAAAACAGTTAGTAGATTTGGTAGCGCGAGTCGAAAAAGAGCTTCAAGTT
GTGGATGAAACCGATGCGGCACTGTTCAAAAGACTGACTATTCTGGTAGA
TAGTTTAAGAACGGAGCTGGTTCATTCCGTTGGCGAGTCAATAGATAATC
AATTGGACAATGAATCGGCGCTGCTTCTAGTGTAG