Gchil1269.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1269.t1
Unique NameGchil1269.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:924578..925099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog266117.Rxyl_0774
Max annot lvl201174|Actinobacteria
Evalue1.06e-28
EggNOG OGs2C3PP@1|root,2Z954@2|Bacteria,2IB93@201174|Actinobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1269Gchil1269Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 924578..925099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1269.t1.stop1Gchil1269.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 924578..924580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1269.t1.CDS1Gchil1269.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 924578..925099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1269.t1.exon1Gchil1269.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 924578..925099 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1269.t1.start1Gchil1269.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 925097..925099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1269.t1Gchil1269.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 924578..925099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1269.t1 ID=Gchil1269.t1|Name=Gchil1269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=174bp
MEENKKKSVFVKEIANHIGPLIEDKKVVLSFRYSLLIGHPAWVVPSFHRV
WPEFFKEDMDSFQALADIFTMMKDAGEDPVVIEAHDLRNHPEKVVMAWCE
QMGIPFISKAIKWEKGMPEDWKPWAQWFTSTSESTGFITAPKKEYPPLTE
KLARIADANRPLYLGLEAHKLQV*
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spliced messenger RNA

>Gchil1269.t1 ID=Gchil1269.t1|Name=Gchil1269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:924578..925099- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAAATAAAAAAAAATCTGTCTTTGTCAAGGAGATTGCAAATCA
CATCGGTCCACTCATTGAGGACAAGAAGGTGGTTCTTTCCTTTCGATATT
CATTGCTCATTGGTCATCCTGCGTGGGTTGTACCTTCATTTCATCGAGTA
TGGCCAGAGTTCTTTAAAGAGGATATGGATAGCTTTCAAGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCATGGCATGGTGTGAA
CAAATGGGAATCCCTTTTATTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCATAACAGCACCAAAGAAAGAATATCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGCGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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protein sequence of Gchil1269.t1

>Gchil1269.t1 ID=Gchil1269.t1|Name=Gchil1269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=174bp
MEENKKKSVFVKEIANHIGPLIEDKKVVLSFRYSLLIGHPAWVVPSFHRV
WPEFFKEDMDSFQALADIFTMMKDAGEDPVVIEAHDLRNHPEKVVMAWCE
QMGIPFISKAIKWEKGMPEDWKPWAQWFTSTSESTGFITAPKKEYPPLTE
KLARIADANRPLYLGLEAHKLQV*
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mRNA from alignment at tig00004437_pilon:924578..925099-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1269.t1 ID=Gchil1269.t1|Name=Gchil1269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:924578..925099- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAAATAAAAAAAAATCTGTCTTTGTCAAGGAGATTGCAAATCA
CATCGGTCCACTCATTGAGGACAAGAAGGTGGTTCTTTCCTTTCGATATT
CATTGCTCATTGGTCATCCTGCGTGGGTTGTACCTTCATTTCATCGAGTA
TGGCCAGAGTTCTTTAAAGAGGATATGGATAGCTTTCAAGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCATGGCATGGTGTGAA
CAAATGGGAATCCCTTTTATTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCATAACAGCACCAAAGAAAGAATATCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGCGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:924578..925099-

>Gchil1269.t1 ID=Gchil1269.t1|Name=Gchil1269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:924578..925099- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAAATAAAAAAAAATCTGTCTTTGTCAAGGAGATTGCAAATCA
CATCGGTCCACTCATTGAGGACAAGAAGGTGGTTCTTTCCTTTCGATATT
CATTGCTCATTGGTCATCCTGCGTGGGTTGTACCTTCATTTCATCGAGTA
TGGCCAGAGTTCTTTAAAGAGGATATGGATAGCTTTCAAGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCATGGCATGGTGTGAA
CAAATGGGAATCCCTTTTATTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCATAACAGCACCAAAGAAAGAATATCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGCGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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