Gchil1268.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1268.t1
Unique NameGchil1268.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:911751..913546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_012422-tr
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue7.87e-101
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1268Gchil1268Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 911751..913546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1Gchil1268.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 911751..913546 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1.start1Gchil1268.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 911751..911753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1.CDS1Gchil1268.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 911751..913386 +
Gchil1268.t1.CDS2Gchil1268.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 913479..913546 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1.exon1Gchil1268.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 911751..913386 +
Gchil1268.t1.exon2Gchil1268.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 913479..913546 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1.intron1Gchil1268.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 913387..913478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1268.t1.stop1Gchil1268.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 913544..913546 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1268.t1 ID=Gchil1268.t1|Name=Gchil1268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=568bp
MNEYIDSLGTATVFTALDANWGYWQVPVRKEDQDKTAFVCHSGLYRFKRM
PFGLTNAPATFQRAIDILLARFKWRTCLVYLDDIIVFSDNLDDHLTHVRD
IMTTLRDAGITLKQRKCEFFTDTVKYLGHIIRPGRVMIEEARVRSLRKAK
EPATQTELRSFLGLVNVYQRFIPNFANIAAPLNTLLRKGQPPKLDPFTSA
QTDAFNSLREAVTSAPILSLPKPKLPFSVDTDSSDYQVGCALFQTTPEGE
RKPIGYWSRSLNVHERNYSVSEKECLAVVWALSTLRPYLMGVHFTVYTDH
SSLRWLMTISEPSGRLMRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTN
GEALAVDDEDLPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDS
KKPPTGDFVPIPQEEMVREQQGDPFCTKIRAWLNGGAQLPFEVNDLGYLV
RTVQSSPQVVVPHTLQSRVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAM
AVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDILEIRFQ
GCTSICNPLGIRLQPAG*
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spliced messenger RNA

>Gchil1268.t1 ID=Gchil1268.t1|Name=Gchil1268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00004437_pilon:911751..913546+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaatgagtacatcgactctctcggcactgctaccgtgttcacggcttt
ggacgccaattggggatattggcaggttcccgttaggaaggaggaccaag
ataagactgcgtttgtctgtcactcgggactctaccgtttcaaacggatg
ccttttggtctaaccaatgctcccgctacctttcagcgtgctatcgacat
tttgttggcccgctttaagtggcgtacttgcctcgtctatttggacgata
tcattgtattctcagacaatctggatgaccatctcacccatgtcagggac
ataatgaccacgctacgtgatgctggaataaccctcaaacagaggaaatg
tgagttctttaccgatactgtgaagtatctcgggcacattatccgtcctg
gacgtgtaatgatcgaggaagctcgagtgaggtcccttcgcaaggcgaaa
gaacccgctacccagacagaactgcgctcctttctaggattggtcaacgt
ctaccaacggtttatccctaacttcgctaacatcgctgcccccttgaaca
cgcttctgcggaaaggtcaaccacctaaactggacccctttacgtccgcc
cagacggatgcttttaactcccttagggaggctgtcacatcagcaccgat
tctatcgttaccgaaacccaaactaccgttttccgtggacacggactcta
gcgactaccaggtaggctgtgcgctctttcaaactactcccgaaggagaa
cgcaaacccattgggtactggtcacgctcgctcaatgtccacgagcggaa
ctactccgtgtcggagaaggagtgcctcgcagttgtgtgggccctctcta
cactccgcccctacctcatgggtgtgcactttaccgtgtacacggatcac
tcatctctacgatggctcatgaccatctcggagccgtcaggccgcttaat
gcgttggagactccgcctcgcggaatatgactttgaagtgatctacaaga
agggcactcagaacgcgcaagcggacgcgctctcgcgtttacccacgaat
ggggaagctctagccgtcgatgacgaggatttaccttgcttcgtcgtaga
cgatggaacaccgggaaacccggattggttacacgataaatggaacgaaa
gcccggaatcggacgatgatattgacgcattgctcgtctcggacgattca
aagaaacccccgacgggtgattttgtaccgataccccaggaggagatggt
cagagaacagcagggtgaccccttctgtacgaagattcgcgcctggctta
atggcggtgcacaactccctttcgaggtgaacgatcttggatacctcgtc
aggacggttcagtcatccccacaagtcgtggtgccgcatactctacagtc
tagagttttgcatctatcgcactatgcgaaacttggtggacacgccggtg
gacggaagctctacctcactttgcgaaggaatttctactggcccgccatg
gcggtggattgttacgcaacggtgcggttttgtaccgaatgtgctaagaa
tcgggtgaaacttcgcaagtactcaacgaagttgaaactattcccggcac
gggctcctctcgagtttgttgccattgacatcctcgaaatccgctttcag
ggttgcacaagcatttgtaacccattgggtattcgtctacagcccgccgg
ttaa
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protein sequence of Gchil1268.t1

>Gchil1268.t1 ID=Gchil1268.t1|Name=Gchil1268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=568bp
MNEYIDSLGTATVFTALDANWGYWQVPVRKEDQDKTAFVCHSGLYRFKRM
PFGLTNAPATFQRAIDILLARFKWRTCLVYLDDIIVFSDNLDDHLTHVRD
IMTTLRDAGITLKQRKCEFFTDTVKYLGHIIRPGRVMIEEARVRSLRKAK
EPATQTELRSFLGLVNVYQRFIPNFANIAAPLNTLLRKGQPPKLDPFTSA
QTDAFNSLREAVTSAPILSLPKPKLPFSVDTDSSDYQVGCALFQTTPEGE
RKPIGYWSRSLNVHERNYSVSEKECLAVVWALSTLRPYLMGVHFTVYTDH
SSLRWLMTISEPSGRLMRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTN
GEALAVDDEDLPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDS
KKPPTGDFVPIPQEEMVREQQGDPFCTKIRAWLNGGAQLPFEVNDLGYLV
RTVQSSPQVVVPHTLQSRVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAM
AVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDILEIRFQ
GCTSICNPLGIRLQPAG*
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mRNA from alignment at tig00004437_pilon:911751..913546+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1268.t1 ID=Gchil1268.t1|Name=Gchil1268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1796bp|location=Sequence derived from alignment at tig00004437_pilon:911751..913546+ (Gracilaria chilensis NLEC103_M9 male)
atgaatgagtacatcgactctctcggcactgctaccgtgttcacggcttt
ggacgccaattggggatattggcaggttcccgttaggaaggaggaccaag
ataagactgcgtttgtctgtcactcgggactctaccgtttcaaacggatg
ccttttggtctaaccaatgctcccgctacctttcagcgtgctatcgacat
tttgttggcccgctttaagtggcgtacttgcctcgtctatttggacgata
tcattgtattctcagacaatctggatgaccatctcacccatgtcagggac
ataatgaccacgctacgtgatgctggaataaccctcaaacagaggaaatg
tgagttctttaccgatactgtgaagtatctcgggcacattatccgtcctg
gacgtgtaatgatcgaggaagctcgagtgaggtcccttcgcaaggcgaaa
gaacccgctacccagacagaactgcgctcctttctaggattggtcaacgt
ctaccaacggtttatccctaacttcgctaacatcgctgcccccttgaaca
cgcttctgcggaaaggtcaaccacctaaactggacccctttacgtccgcc
cagacggatgcttttaactcccttagggaggctgtcacatcagcaccgat
tctatcgttaccgaaacccaaactaccgttttccgtggacacggactcta
gcgactaccaggtaggctgtgcgctctttcaaactactcccgaaggagaa
cgcaaacccattgggtactggtcacgctcgctcaatgtccacgagcggaa
ctactccgtgtcggagaaggagtgcctcgcagttgtgtgggccctctcta
cactccgcccctacctcatgggtgtgcactttaccgtgtacacggatcac
tcatctctacgatggctcatgaccatctcggagccgtcaggccgcttaat
gcgttggagactccgcctcgcggaatatgactttgaagtgatctacaaga
agggcactcagaacgcgcaagcggacgcgctctcgcgtttacccacgaat
ggggaagctctagccgtcgatgacgaggatttaccttgcttcgtcgtaga
cgatggaacaccgggaaacccggattggttacacgataaatggaacgaaa
gcccggaatcggacgatgatattgacgcattgctcgtctcggacgattca
aagaaacccccgacgggtgattttgtaccgataccccaggaggagatggt
cagagaacagcagggtgaccccttctgtacgaagattcgcgcctggctta
atggcggtgcacaactccctttcgaggtgaacgatcttggatacctcgtc
aggacggttcagtcatccccacaagtcgtggtgccgcatactctacagtc
tagagttttgcatctatcgcactatgcgaaacttggtggacacgccggtg
gacggaagctctacctcactttgcgaaggaatttctactggcccgccatg
gcggtggattgttacgcaacggtgcggttttgtaccgaatgtgctaagaa
tcgggtgaaacttcgcaagtactcaacgaagttgaaactattcccggcac
gggctcctctcgagtttgttgccattgacatcctcggtaagctcctcacc
acacgacgtgggcatacgtttttactcgttatcacggatcgtttctcaaa
actggttcggaccgtacctttacggaagaaatccgctttcagggttgcac
aagcatttgtaacccattgggtattcgtctacagcccgccggttaa
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Coding sequence (CDS) from alignment at tig00004437_pilon:911751..913546+

>Gchil1268.t1 ID=Gchil1268.t1|Name=Gchil1268.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1704bp|location=Sequence derived from alignment at tig00004437_pilon:911751..913546+ (Gracilaria chilensis NLEC103_M9 male)
atgaatgagtacatcgactctctcggcactgctaccgtgttcacggcttt
ggacgccaattggggatattggcaggttcccgttaggaaggaggaccaag
ataagactgcgtttgtctgtcactcgggactctaccgtttcaaacggatg
ccttttggtctaaccaatgctcccgctacctttcagcgtgctatcgacat
tttgttggcccgctttaagtggcgtacttgcctcgtctatttggacgata
tcattgtattctcagacaatctggatgaccatctcacccatgtcagggac
ataatgaccacgctacgtgatgctggaataaccctcaaacagaggaaatg
tgagttctttaccgatactgtgaagtatctcgggcacattatccgtcctg
gacgtgtaatgatcgaggaagctcgagtgaggtcccttcgcaaggcgaaa
gaacccgctacccagacagaactgcgctcctttctaggattggtcaacgt
ctaccaacggtttatccctaacttcgctaacatcgctgcccccttgaaca
cgcttctgcggaaaggtcaaccacctaaactggacccctttacgtccgcc
cagacggatgcttttaactcccttagggaggctgtcacatcagcaccgat
tctatcgttaccgaaacccaaactaccgttttccgtggacacggactcta
gcgactaccaggtaggctgtgcgctctttcaaactactcccgaaggagaa
cgcaaacccattgggtactggtcacgctcgctcaatgtccacgagcggaa
ctactccgtgtcggagaaggagtgcctcgcagttgtgtgggccctctcta
cactccgcccctacctcatgggtgtgcactttaccgtgtacacggatcac
tcatctctacgatggctcatgaccatctcggagccgtcaggccgcttaat
gcgttggagactccgcctcgcggaatatgactttgaagtgatctacaaga
agggcactcagaacgcgcaagcggacgcgctctcgcgtttacccacgaat
ggggaagctctagccgtcgatgacgaggatttaccttgcttcgtcgtaga
cgatggaacaccgggaaacccggattggttacacgataaatggaacgaaa
gcccggaatcggacgatgatattgacgcattgctcgtctcggacgattca
aagaaacccccgacgggtgattttgtaccgataccccaggaggagatggt
cagagaacagcagggtgaccccttctgtacgaagattcgcgcctggctta
atggcggtgcacaactccctttcgaggtgaacgatcttggatacctcgtc
aggacggttcagtcatccccacaagtcgtggtgccgcatactctacagtc
tagagttttgcatctatcgcactatgcgaaacttggtggacacgccggtg
gacggaagctctacctcactttgcgaaggaatttctactggcccgccatg
gcggtggattgttacgcaacggtgcggttttgtaccgaatgtgctaagaa
tcgggtgaaacttcgcaagtactcaacgaagttgaaactattcccggcac
gggctcctctcgagtttgttgccattgacatcctcgaaatccgctttcag
ggttgcacaagcatttgtaacccattgggtattcgtctacagcccgccgg
ttaa
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