Gchil1265.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1265.t1
Unique NameGchil1265.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:901042..901563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog266117.Rxyl_0774
Max annot lvl201174|Actinobacteria
Evalue1.56e-31
EggNOG OGs2C3PP@1|root,2Z954@2|Bacteria,2IB93@201174|Actinobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1265Gchil1265Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 901042..901563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1265.t1.stop1Gchil1265.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 901042..901044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1265.t1.CDS1Gchil1265.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 901042..901563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1265.t1.exon1Gchil1265.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 901042..901563 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1265.t1.start1Gchil1265.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 901561..901563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1265.t1Gchil1265.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 901042..901563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1265.t1 ID=Gchil1265.t1|Name=Gchil1265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=174bp
MEEKKKQPVFIREIANHIGPLNLDKKVVLSFRGSLLIRHPAWVAPSFHRV
WPEFFKEDMVSFHALADIFTMMKDAGEDPVVIEAHDLRNHPEKVVKAWCE
HMGIPFVSKAIKWEKGMPEDWKPWAQWFTSTSESTGFLLAPKKEFPPLTE
KLARIVDANRPLYLGLEAHKLQV*
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spliced messenger RNA

>Gchil1265.t1 ID=Gchil1265.t1|Name=Gchil1265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:901042..901563- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAAAAAAGAAACAACCTGTCTTTATCAGGGAGATTGCAAACCA
CATCGGTCCACTCAATCTGGACAAGAAGGTGGTTCTTTCCTTTCGAGGTT
CATTGCTCATTCGTCATCCTGCGTGGGTTGCACCTTCATTTCATCGAGTA
TGGCCGGAGTTCTTTAAAGAGGATATGGTTAGCTTTCACGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCAAGGCATGGTGTGAA
CACATGGGAATCCCTTTTGTTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCCTACTAGCACCAAAGAAAGAATTTCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGTGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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protein sequence of Gchil1265.t1

>Gchil1265.t1 ID=Gchil1265.t1|Name=Gchil1265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=174bp
MEEKKKQPVFIREIANHIGPLNLDKKVVLSFRGSLLIRHPAWVAPSFHRV
WPEFFKEDMVSFHALADIFTMMKDAGEDPVVIEAHDLRNHPEKVVKAWCE
HMGIPFVSKAIKWEKGMPEDWKPWAQWFTSTSESTGFLLAPKKEFPPLTE
KLARIVDANRPLYLGLEAHKLQV*
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mRNA from alignment at tig00004437_pilon:901042..901563-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1265.t1 ID=Gchil1265.t1|Name=Gchil1265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:901042..901563- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAAAAAAGAAACAACCTGTCTTTATCAGGGAGATTGCAAACCA
CATCGGTCCACTCAATCTGGACAAGAAGGTGGTTCTTTCCTTTCGAGGTT
CATTGCTCATTCGTCATCCTGCGTGGGTTGCACCTTCATTTCATCGAGTA
TGGCCGGAGTTCTTTAAAGAGGATATGGTTAGCTTTCACGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCAAGGCATGGTGTGAA
CACATGGGAATCCCTTTTGTTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCCTACTAGCACCAAAGAAAGAATTTCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGTGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:901042..901563-

>Gchil1265.t1 ID=Gchil1265.t1|Name=Gchil1265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00004437_pilon:901042..901563- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAAAAAAGAAACAACCTGTCTTTATCAGGGAGATTGCAAACCA
CATCGGTCCACTCAATCTGGACAAGAAGGTGGTTCTTTCCTTTCGAGGTT
CATTGCTCATTCGTCATCCTGCGTGGGTTGCACCTTCATTTCATCGAGTA
TGGCCGGAGTTCTTTAAAGAGGATATGGTTAGCTTTCACGCCTTGGCAGA
TATCTTTACAATGATGAAGGACGCTGGGGAGGATCCGGTGGTAATCGAAG
CTCATGATCTTCGGAATCATCCTGAGAAAGTTGTCAAGGCATGGTGTGAA
CACATGGGAATCCCTTTTGTTTCAAAGGCGATAAAATGGGAAAAAGGGAT
GCCGGAAGACTGGAAGCCCTGGGCGCAATGGTTCACTTCCACTTCCGAGT
CGACAGGGTTCCTACTAGCACCAAAGAAAGAATTTCCGCCGTTGACGGAG
AAGCTTGCTAGGATTGTGGACGCAAATCGTCCGCTTTATCTCGGCCTCGA
GGCGCACAAACTGCAAGTGTAA
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