Gchil1249.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1249.t1
Unique NameGchil1249.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:671144..671791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002955041.1
PFAMsDUF3119
Max annot lvl3041|Chlorophyta
Evalue1.28e-17
EggNOG OGs2CPJ9@1|root,2R1VP@2759|Eukaryota,37KDW@33090|Viridiplantae,34I5D@3041|Chlorophyta
DescriptionProtein of unknown function (DUF3119)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1249Gchil1249Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 671144..671791 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1249.t1.stop1Gchil1249.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 671144..671146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1249.t1.CDS1Gchil1249.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 671144..671791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1249.t1.exon1Gchil1249.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 671144..671791 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1249.t1.start1Gchil1249.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 671789..671791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1249.t1Gchil1249.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 671144..671791 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1249.t1 ID=Gchil1249.t1|Name=Gchil1249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp
MEQAFVSTTPVFRKTLLSRNAVMRSSKRLDLVKPQVPRRPKIVANTPSQP
KPSSASETSTEQTETTLIIEADALDPSTGSVVVPATFNLAGAFVFSGGLC
FYLGDGWLVAGFPILLLGVLLSVQTFRIRFVFGPTRLSVARKTSDGLKII
RGWKYELITNWEVWWKRVPILAYFKESESYNGRGSIHFFPILCKGDVLLG
ELRKRTQHLDKTQYN*
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spliced messenger RNA

>Gchil1249.t1 ID=Gchil1249.t1|Name=Gchil1249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00004437_pilon:671144..671791- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAAGCATTTGTTTCTACCACCCCGGTTTTTCGGAAGACACTGCT
CTCCAGAAATGCCGTCATGCGCTCATCAAAGCGCCTGGATCTAGTCAAGC
CGCAGGTGCCACGTCGCCCAAAAATTGTGGCTAATACACCCTCCCAGCCC
AAGCCCTCCTCTGCCTCTGAAACGTCTACAGAGCAAACAGAGACAACTCT
CATCATTGAAGCAGACGCGTTAGACCCATCTACAGGCTCTGTCGTCGTGC
CAGCAACGTTCAATTTGGCAGGAGCATTCGTGTTTTCTGGAGGATTATGC
TTCTACTTAGGCGATGGATGGCTGGTAGCGGGCTTTCCAATACTGCTGCT
TGGTGTTTTGCTTTCCGTGCAGACTTTTCGGATTCGGTTCGTGTTCGGAC
CAACGCGTCTTAGCGTCGCCAGAAAAACTAGTGATGGTCTGAAAATAATC
AGAGGATGGAAGTATGAACTCATAACCAATTGGGAGGTTTGGTGGAAGAG
AGTTCCTATTTTGGCATACTTCAAAGAAAGCGAGAGCTACAATGGTCGTG
GGAGCATTCATTTCTTTCCCATTCTATGCAAGGGCGATGTTCTGCTGGGA
GAGCTGAGAAAGCGTACTCAGCATCTTGACAAGACCCAATACAATTGA
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protein sequence of Gchil1249.t1

>Gchil1249.t1 ID=Gchil1249.t1|Name=Gchil1249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=216bp
MEQAFVSTTPVFRKTLLSRNAVMRSSKRLDLVKPQVPRRPKIVANTPSQP
KPSSASETSTEQTETTLIIEADALDPSTGSVVVPATFNLAGAFVFSGGLC
FYLGDGWLVAGFPILLLGVLLSVQTFRIRFVFGPTRLSVARKTSDGLKII
RGWKYELITNWEVWWKRVPILAYFKESESYNGRGSIHFFPILCKGDVLLG
ELRKRTQHLDKTQYN*
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mRNA from alignment at tig00004437_pilon:671144..671791-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1249.t1 ID=Gchil1249.t1|Name=Gchil1249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00004437_pilon:671144..671791- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACAAGCATTTGTTTCTACCACCCCGGTTTTTCGGAAGACACTGCT
CTCCAGAAATGCCGTCATGCGCTCATCAAAGCGCCTGGATCTAGTCAAGC
CGCAGGTGCCACGTCGCCCAAAAATTGTGGCTAATACACCCTCCCAGCCC
AAGCCCTCCTCTGCCTCTGAAACGTCTACAGAGCAAACAGAGACAACTCT
CATCATTGAAGCAGACGCGTTAGACCCATCTACAGGCTCTGTCGTCGTGC
CAGCAACGTTCAATTTGGCAGGAGCATTCGTGTTTTCTGGAGGATTATGC
TTCTACTTAGGCGATGGATGGCTGGTAGCGGGCTTTCCAATACTGCTGCT
TGGTGTTTTGCTTTCCGTGCAGACTTTTCGGATTCGGTTCGTGTTCGGAC
CAACGCGTCTTAGCGTCGCCAGAAAAACTAGTGATGGTCTGAAAATAATC
AGAGGATGGAAGTATGAACTCATAACCAATTGGGAGGTTTGGTGGAAGAG
AGTTCCTATTTTGGCATACTTCAAAGAAAGCGAGAGCTACAATGGTCGTG
GGAGCATTCATTTCTTTCCCATTCTATGCAAGGGCGATGTTCTGCTGGGA
GAGCTGAGAAAGCGTACTCAGCATCTTGACAAGACCCAATACAATTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:671144..671791-

>Gchil1249.t1 ID=Gchil1249.t1|Name=Gchil1249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00004437_pilon:671144..671791- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACAAGCATTTGTTTCTACCACCCCGGTTTTTCGGAAGACACTGCT
CTCCAGAAATGCCGTCATGCGCTCATCAAAGCGCCTGGATCTAGTCAAGC
CGCAGGTGCCACGTCGCCCAAAAATTGTGGCTAATACACCCTCCCAGCCC
AAGCCCTCCTCTGCCTCTGAAACGTCTACAGAGCAAACAGAGACAACTCT
CATCATTGAAGCAGACGCGTTAGACCCATCTACAGGCTCTGTCGTCGTGC
CAGCAACGTTCAATTTGGCAGGAGCATTCGTGTTTTCTGGAGGATTATGC
TTCTACTTAGGCGATGGATGGCTGGTAGCGGGCTTTCCAATACTGCTGCT
TGGTGTTTTGCTTTCCGTGCAGACTTTTCGGATTCGGTTCGTGTTCGGAC
CAACGCGTCTTAGCGTCGCCAGAAAAACTAGTGATGGTCTGAAAATAATC
AGAGGATGGAAGTATGAACTCATAACCAATTGGGAGGTTTGGTGGAAGAG
AGTTCCTATTTTGGCATACTTCAAAGAAAGCGAGAGCTACAATGGTCGTG
GGAGCATTCATTTCTTTCCCATTCTATGCAAGGGCGATGTTCTGCTGGGA
GAGCTGAGAAAGCGTACTCAGCATCTTGACAAGACCCAATACAATTGA
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