Gchil1247.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1247.t1
Unique NameGchil1247.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:668389..669228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1247Gchil1247Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 668389..669228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1Gchil1247.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 668389..669228 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1.start1Gchil1247.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 668389..668391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1.CDS1Gchil1247.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 668389..668460 +
Gchil1247.t1.CDS2Gchil1247.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 668520..668604 +
Gchil1247.t1.CDS3Gchil1247.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 668675..669228 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1.exon1Gchil1247.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 668389..668460 +
Gchil1247.t1.exon2Gchil1247.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 668520..668604 +
Gchil1247.t1.exon3Gchil1247.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 668675..669228 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1.intron1Gchil1247.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 668461..668519 +
Gchil1247.t1.intron2Gchil1247.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 668605..668674 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1247.t1.stop1Gchil1247.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 669226..669228 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1247.t1 ID=Gchil1247.t1|Name=Gchil1247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp
MPRSETYRRSPLLWYHALVAGLTMFAGLTLMSVGIFLKVVDPMHNFKLSF
TANDSFNEYFTVAYLGIFTGIILILISAVGVCAVRVYQYRVLILTGYTLL
CISTIISLGFLSVVWLNVARGNFTQFALEGRLHKAWQNTVVLDKKVVCDI
QRDFQCFGFRRGDCAVCPNSVMDGTLCERNPLDCPVCEKMSKNSSLTDGC
FDAIVEKLKSVHTPAGITCATVAGMLVIDMVFVYAL*
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spliced messenger RNA

>Gchil1247.t1 ID=Gchil1247.t1|Name=Gchil1247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00004437_pilon:668389..669228+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGATCGGAGACATACAGAAGGTCTCCTTTACTTTGGTACCATGC
TCTCGTTGCAGGATTGACAATGTTTGCTGGTCTTACGCTCATGAGCGTCG
GTATCTTTCTGAAAGTCGTGGATCCGATGCACAACTTCAAACTCTCATTT
ACAGCAAATGACTCTTTCAACGAGTATTTCACTGTCGCCTATCTTGGAAT
TTTCACAGGCATCATACTCATCTTAATTTCTGCTGTTGGGGTCTGCGCAG
TTCGAGTGTATCAATATCGAGTTCTGATTTTGACGGGATATACTCTGCTG
TGCATTTCAACCATAATAAGTCTTGGATTCCTTTCCGTGGTCTGGTTGAA
CGTAGCCAGAGGAAACTTTACACAGTTTGCTCTGGAAGGCCGCCTTCACA
AAGCATGGCAGAATACAGTTGTATTGGACAAGAAAGTTGTATGTGATATC
CAAAGGGACTTTCAGTGCTTCGGTTTCCGACGCGGAGATTGTGCGGTTTG
TCCAAACTCTGTTATGGATGGGACGCTATGCGAGAGAAACCCTTTAGACT
GCCCTGTGTGTGAAAAAATGTCAAAGAACTCCAGCCTAACAGACGGATGC
TTTGACGCCATTGTAGAGAAATTGAAGAGTGTGCACACACCCGCAGGGAT
CACTTGCGCGACTGTTGCGGGAATGCTTGTAATTGATATGGTATTTGTTT
ATGCGTTATGA
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protein sequence of Gchil1247.t1

>Gchil1247.t1 ID=Gchil1247.t1|Name=Gchil1247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=237bp
MPRSETYRRSPLLWYHALVAGLTMFAGLTLMSVGIFLKVVDPMHNFKLSF
TANDSFNEYFTVAYLGIFTGIILILISAVGVCAVRVYQYRVLILTGYTLL
CISTIISLGFLSVVWLNVARGNFTQFALEGRLHKAWQNTVVLDKKVVCDI
QRDFQCFGFRRGDCAVCPNSVMDGTLCERNPLDCPVCEKMSKNSSLTDGC
FDAIVEKLKSVHTPAGITCATVAGMLVIDMVFVYAL*
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mRNA from alignment at tig00004437_pilon:668389..669228+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1247.t1 ID=Gchil1247.t1|Name=Gchil1247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004437_pilon:668389..669228+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAGATCGGAGACATACAGAAGGTCTCCTTTACTTTGGTACCATGC
TCTCGTTGCAGGATTGACAATGGTAAGTATTCCTGCAAGCCTCTAGCGTG
TCTGTCAATGTTCGGCTGACTCAAAGTAAAGTTTGCTGGTCTTACGCTCA
TGAGCGTCGGTATCTTTCTGAAAGTCGTGGATCCGATGCACAACTTCAAA
CTCTCATTTACAGCAAGTAAGTTTTCTTAGTGTTTAGGAGTTCGCCGCTT
AGTCCTTGAGGTCCTGACGCTCATTTCAATATGAAGATGACTCTTTCAAC
GAGTATTTCACTGTCGCCTATCTTGGAATTTTCACAGGCATCATACTCAT
CTTAATTTCTGCTGTTGGGGTCTGCGCAGTTCGAGTGTATCAATATCGAG
TTCTGATTTTGACGGGATATACTCTGCTGTGCATTTCAACCATAATAAGT
CTTGGATTCCTTTCCGTGGTCTGGTTGAACGTAGCCAGAGGAAACTTTAC
ACAGTTTGCTCTGGAAGGCCGCCTTCACAAAGCATGGCAGAATACAGTTG
TATTGGACAAGAAAGTTGTATGTGATATCCAAAGGGACTTTCAGTGCTTC
GGTTTCCGACGCGGAGATTGTGCGGTTTGTCCAAACTCTGTTATGGATGG
GACGCTATGCGAGAGAAACCCTTTAGACTGCCCTGTGTGTGAAAAAATGT
CAAAGAACTCCAGCCTAACAGACGGATGCTTTGACGCCATTGTAGAGAAA
TTGAAGAGTGTGCACACACCCGCAGGGATCACTTGCGCGACTGTTGCGGG
AATGCTTGTAATTGATATGGTATTTGTTTATGCGTTATGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:668389..669228+

>Gchil1247.t1 ID=Gchil1247.t1|Name=Gchil1247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00004437_pilon:668389..669228+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAGATCGGAGACATACAGAAGGTCTCCTTTACTTTGGTACCATGC
TCTCGTTGCAGGATTGACAATGTTTGCTGGTCTTACGCTCATGAGCGTCG
GTATCTTTCTGAAAGTCGTGGATCCGATGCACAACTTCAAACTCTCATTT
ACAGCAAATGACTCTTTCAACGAGTATTTCACTGTCGCCTATCTTGGAAT
TTTCACAGGCATCATACTCATCTTAATTTCTGCTGTTGGGGTCTGCGCAG
TTCGAGTGTATCAATATCGAGTTCTGATTTTGACGGGATATACTCTGCTG
TGCATTTCAACCATAATAAGTCTTGGATTCCTTTCCGTGGTCTGGTTGAA
CGTAGCCAGAGGAAACTTTACACAGTTTGCTCTGGAAGGCCGCCTTCACA
AAGCATGGCAGAATACAGTTGTATTGGACAAGAAAGTTGTATGTGATATC
CAAAGGGACTTTCAGTGCTTCGGTTTCCGACGCGGAGATTGTGCGGTTTG
TCCAAACTCTGTTATGGATGGGACGCTATGCGAGAGAAACCCTTTAGACT
GCCCTGTGTGTGAAAAAATGTCAAAGAACTCCAGCCTAACAGACGGATGC
TTTGACGCCATTGTAGAGAAATTGAAGAGTGTGCACACACCCGCAGGGAT
CACTTGCGCGACTGTTGCGGGAATGCTTGTAATTGATATGGTATTTGTTT
ATGCGTTATGA
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