Gchil1246.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1246.t1
Unique NameGchil1246.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:666321..667628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705348.1
PFAMsDUF760
Max annot lvl2759|Eukaryota
Evalue2.13e-54
EggNOG OGs28KAV@1|root,2QSRQ@2759|Eukaryota
DescriptionProtein of unknown function (DUF760)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1246Gchil1246Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 666321..667628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1246.t1.stop1Gchil1246.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 666321..666323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1246.t1.CDS1Gchil1246.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 666321..667628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1246.t1.exon1Gchil1246.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 666321..667628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1246.t1.start1Gchil1246.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 667626..667628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1246.t1Gchil1246.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 666321..667628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1246.t1 ID=Gchil1246.t1|Name=Gchil1246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp
MGRPPLIQFVVVDVWILNWIKKLDPHDLRTRCAAQATFVPYQYFPEKRNY
MRSVPPHSVCQSPPTLRTSRWFQSPISATPQPVKPTRPQVFTAMDLAFQQ
SLVVLPRIHHLTRRSYRRPSYTLRRSHRLCWTALADQSNPSLSGGSGRSD
DGSRDAEFNLDLSTQPEVEETNELFKIIKQVPPPDLVKKFTETSPPVVQN
AIRETLVSMLGSLPPLAFATSVSTMSSNLVQLFHSSLVTGYMFRNATYRM
ELTRSLDWSGIRALPSSEKEPPKIEGGVAVFKQNDGSEVEVPVEEYISEL
RQTVTNLKGELERERKGGNELLSFIATMEKENIEALTKNAGDEVVDAMKK
VVQAVTKSQGISMEKDGIIHAATPDLGQLLFYLMVSGFFLREAEVHLDLQ
RKLGGDPSSITNLLGGTEKGPDDSDGKSSQLPKKS*
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spliced messenger RNA

>Gchil1246.t1 ID=Gchil1246.t1|Name=Gchil1246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00004437_pilon:666321..667628- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGGCCACCTTTGATACAGTTCGTTGTGGTAGACGTCTGGATTTT
AAACTGGATTAAAAAATTAGATCCGCACGACCTGCGCACACGGTGCGCCG
CACAGGCTACCTTCGTACCTTACCAGTACTTCCCTGAGAAGCGAAACTAC
ATGCGGTCCGTGCCACCTCACAGCGTATGTCAATCTCCACCAACACTCCG
AACGTCGCGCTGGTTTCAGAGTCCCATCTCGGCCACACCGCAGCCTGTCA
AGCCCACACGCCCTCAAGTCTTTACCGCTATGGACCTCGCTTTTCAACAA
TCACTGGTCGTCCTGCCCCGCATTCACCATTTAACACGGCGTTCTTACCG
TCGGCCATCGTACACTCTGCGTCGCTCCCATCGCCTTTGCTGGACTGCGC
TAGCAGACCAATCGAACCCCTCGCTCAGTGGCGGATCCGGGCGCAGTGAT
GACGGATCTCGAGACGCAGAATTTAATCTTGACTTGTCCACACAACCCGA
GGTGGAAGAGACTAATGAACTCTTCAAGATAATCAAACAGGTGCCTCCAC
CAGACCTTGTGAAGAAGTTTACAGAAACTTCACCGCCGGTTGTGCAGAAC
GCAATCAGAGAGACACTTGTCAGCATGCTTGGAAGTTTGCCGCCCCTCGC
TTTCGCGACATCTGTTTCTACCATGTCGTCGAATCTTGTCCAGTTGTTTC
ACTCTTCTTTGGTAACTGGGTACATGTTCAGGAATGCCACGTACAGAATG
GAGCTCACAAGAAGTTTGGATTGGTCTGGCATTAGAGCTCTTCCCTCATC
AGAAAAAGAGCCTCCAAAGATTGAAGGTGGAGTTGCTGTGTTTAAGCAGA
ACGATGGTTCCGAAGTGGAGGTGCCCGTTGAAGAATACATTTCAGAACTA
CGACAAACCGTCACAAACCTTAAGGGAGAGCTTGAGAGAGAACGCAAGGG
CGGTAACGAACTGTTGAGCTTTATCGCCACGATGGAAAAGGAAAATATCG
AGGCTCTAACAAAGAATGCGGGAGACGAAGTCGTGGATGCCATGAAGAAA
GTTGTCCAAGCCGTCACGAAGTCACAAGGAATTAGTATGGAAAAAGATGG
TATAATTCACGCAGCTACTCCAGACCTAGGCCAGCTTCTCTTCTACTTAA
TGGTTAGTGGATTCTTCCTGAGGGAAGCCGAAGTTCACCTAGACCTGCAG
CGTAAACTTGGTGGTGATCCCTCAAGTATAACAAATTTGTTGGGTGGTAC
GGAAAAAGGCCCTGATGATAGTGATGGAAAGTCGAGCCAACTCCCCAAAA
AATCGTAA
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protein sequence of Gchil1246.t1

>Gchil1246.t1 ID=Gchil1246.t1|Name=Gchil1246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=436bp
MGRPPLIQFVVVDVWILNWIKKLDPHDLRTRCAAQATFVPYQYFPEKRNY
MRSVPPHSVCQSPPTLRTSRWFQSPISATPQPVKPTRPQVFTAMDLAFQQ
SLVVLPRIHHLTRRSYRRPSYTLRRSHRLCWTALADQSNPSLSGGSGRSD
DGSRDAEFNLDLSTQPEVEETNELFKIIKQVPPPDLVKKFTETSPPVVQN
AIRETLVSMLGSLPPLAFATSVSTMSSNLVQLFHSSLVTGYMFRNATYRM
ELTRSLDWSGIRALPSSEKEPPKIEGGVAVFKQNDGSEVEVPVEEYISEL
RQTVTNLKGELERERKGGNELLSFIATMEKENIEALTKNAGDEVVDAMKK
VVQAVTKSQGISMEKDGIIHAATPDLGQLLFYLMVSGFFLREAEVHLDLQ
RKLGGDPSSITNLLGGTEKGPDDSDGKSSQLPKKS*
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mRNA from alignment at tig00004437_pilon:666321..667628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1246.t1 ID=Gchil1246.t1|Name=Gchil1246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00004437_pilon:666321..667628- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACGGCCACCTTTGATACAGTTCGTTGTGGTAGACGTCTGGATTTT
AAACTGGATTAAAAAATTAGATCCGCACGACCTGCGCACACGGTGCGCCG
CACAGGCTACCTTCGTACCTTACCAGTACTTCCCTGAGAAGCGAAACTAC
ATGCGGTCCGTGCCACCTCACAGCGTATGTCAATCTCCACCAACACTCCG
AACGTCGCGCTGGTTTCAGAGTCCCATCTCGGCCACACCGCAGCCTGTCA
AGCCCACACGCCCTCAAGTCTTTACCGCTATGGACCTCGCTTTTCAACAA
TCACTGGTCGTCCTGCCCCGCATTCACCATTTAACACGGCGTTCTTACCG
TCGGCCATCGTACACTCTGCGTCGCTCCCATCGCCTTTGCTGGACTGCGC
TAGCAGACCAATCGAACCCCTCGCTCAGTGGCGGATCCGGGCGCAGTGAT
GACGGATCTCGAGACGCAGAATTTAATCTTGACTTGTCCACACAACCCGA
GGTGGAAGAGACTAATGAACTCTTCAAGATAATCAAACAGGTGCCTCCAC
CAGACCTTGTGAAGAAGTTTACAGAAACTTCACCGCCGGTTGTGCAGAAC
GCAATCAGAGAGACACTTGTCAGCATGCTTGGAAGTTTGCCGCCCCTCGC
TTTCGCGACATCTGTTTCTACCATGTCGTCGAATCTTGTCCAGTTGTTTC
ACTCTTCTTTGGTAACTGGGTACATGTTCAGGAATGCCACGTACAGAATG
GAGCTCACAAGAAGTTTGGATTGGTCTGGCATTAGAGCTCTTCCCTCATC
AGAAAAAGAGCCTCCAAAGATTGAAGGTGGAGTTGCTGTGTTTAAGCAGA
ACGATGGTTCCGAAGTGGAGGTGCCCGTTGAAGAATACATTTCAGAACTA
CGACAAACCGTCACAAACCTTAAGGGAGAGCTTGAGAGAGAACGCAAGGG
CGGTAACGAACTGTTGAGCTTTATCGCCACGATGGAAAAGGAAAATATCG
AGGCTCTAACAAAGAATGCGGGAGACGAAGTCGTGGATGCCATGAAGAAA
GTTGTCCAAGCCGTCACGAAGTCACAAGGAATTAGTATGGAAAAAGATGG
TATAATTCACGCAGCTACTCCAGACCTAGGCCAGCTTCTCTTCTACTTAA
TGGTTAGTGGATTCTTCCTGAGGGAAGCCGAAGTTCACCTAGACCTGCAG
CGTAAACTTGGTGGTGATCCCTCAAGTATAACAAATTTGTTGGGTGGTAC
GGAAAAAGGCCCTGATGATAGTGATGGAAAGTCGAGCCAACTCCCCAAAA
AATCGTAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:666321..667628-

>Gchil1246.t1 ID=Gchil1246.t1|Name=Gchil1246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00004437_pilon:666321..667628- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACGGCCACCTTTGATACAGTTCGTTGTGGTAGACGTCTGGATTTT
AAACTGGATTAAAAAATTAGATCCGCACGACCTGCGCACACGGTGCGCCG
CACAGGCTACCTTCGTACCTTACCAGTACTTCCCTGAGAAGCGAAACTAC
ATGCGGTCCGTGCCACCTCACAGCGTATGTCAATCTCCACCAACACTCCG
AACGTCGCGCTGGTTTCAGAGTCCCATCTCGGCCACACCGCAGCCTGTCA
AGCCCACACGCCCTCAAGTCTTTACCGCTATGGACCTCGCTTTTCAACAA
TCACTGGTCGTCCTGCCCCGCATTCACCATTTAACACGGCGTTCTTACCG
TCGGCCATCGTACACTCTGCGTCGCTCCCATCGCCTTTGCTGGACTGCGC
TAGCAGACCAATCGAACCCCTCGCTCAGTGGCGGATCCGGGCGCAGTGAT
GACGGATCTCGAGACGCAGAATTTAATCTTGACTTGTCCACACAACCCGA
GGTGGAAGAGACTAATGAACTCTTCAAGATAATCAAACAGGTGCCTCCAC
CAGACCTTGTGAAGAAGTTTACAGAAACTTCACCGCCGGTTGTGCAGAAC
GCAATCAGAGAGACACTTGTCAGCATGCTTGGAAGTTTGCCGCCCCTCGC
TTTCGCGACATCTGTTTCTACCATGTCGTCGAATCTTGTCCAGTTGTTTC
ACTCTTCTTTGGTAACTGGGTACATGTTCAGGAATGCCACGTACAGAATG
GAGCTCACAAGAAGTTTGGATTGGTCTGGCATTAGAGCTCTTCCCTCATC
AGAAAAAGAGCCTCCAAAGATTGAAGGTGGAGTTGCTGTGTTTAAGCAGA
ACGATGGTTCCGAAGTGGAGGTGCCCGTTGAAGAATACATTTCAGAACTA
CGACAAACCGTCACAAACCTTAAGGGAGAGCTTGAGAGAGAACGCAAGGG
CGGTAACGAACTGTTGAGCTTTATCGCCACGATGGAAAAGGAAAATATCG
AGGCTCTAACAAAGAATGCGGGAGACGAAGTCGTGGATGCCATGAAGAAA
GTTGTCCAAGCCGTCACGAAGTCACAAGGAATTAGTATGGAAAAAGATGG
TATAATTCACGCAGCTACTCCAGACCTAGGCCAGCTTCTCTTCTACTTAA
TGGTTAGTGGATTCTTCCTGAGGGAAGCCGAAGTTCACCTAGACCTGCAG
CGTAAACTTGGTGGTGATCCCTCAAGTATAACAAATTTGTTGGGTGGTAC
GGAAAAAGGCCCTGATGATAGTGATGGAAAGTCGAGCCAACTCCCCAAAA
AATCGTAA
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